HEADER OXIDOREDUCTASE 15-AUG-08 3E6I TITLE HUMAN CYTOCHROME P450 2E1 IN COMPLEX WITH THE INHIBITOR INDAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 2E1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 32-493; COMPND 5 SYNONYM: CYPIIE1, P450-J; COMPND 6 EC: 1.14.14.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: CYP2E1, CYP2E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TOPP3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PKK2E1DH KEYWDS CYP2E1, P450 2E1, MONOOXYGENASE, ACETAMINOPHEN, OXIDOREDUCTASE, HEME, KEYWDS 2 ENDOPLASMIC RETICULUM, IRON, MEMBRANE, METAL-BINDING, MICROSOME EXPDTA X-RAY DIFFRACTION AUTHOR P.R.PORUBSKY,K.M.MENEELY,E.E.SCOTT REVDAT 5 30-AUG-23 3E6I 1 REMARK SEQADV LINK REVDAT 4 09-JUN-09 3E6I 1 REVDAT REVDAT 3 24-FEB-09 3E6I 1 VERSN REVDAT 2 02-DEC-08 3E6I 1 JRNL REVDAT 1 23-SEP-08 3E6I 0 JRNL AUTH P.R.PORUBSKY,K.M.MENEELY,E.E.SCOTT JRNL TITL STRUCTURES OF HUMAN CYTOCHROME P450 2E1: INSIGHTS INTO THE JRNL TITL 2 BINDING OF INHIBITORS AND BOTH SMALL MOLECULAR WEIGHT AND JRNL TITL 3 FATTY ACID SUBSTRATES. JRNL REF J.BIOL.CHEM. V. 283 33698 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18818195 JRNL DOI 10.1074/JBC.M805999200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 225 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7534 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.582 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7890 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10714 ; 1.621 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 925 ; 8.968 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 374 ;37.005 ;23.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1352 ;19.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;22.746 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1131 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6065 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3902 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5265 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 281 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4793 ; 0.664 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7565 ; 1.126 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3501 ; 1.553 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3144 ; 2.380 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL. ASYMMETRIC REMARK 200 CUT 12.2 DEGS. REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56268 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 112.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2P85 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% V/V ISOPROPANOL, 6% PEG MME 2000, REMARK 280 0.1M NA HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.58500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 168.87750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.29250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 LYS A 24 REMARK 465 LYS A 25 REMARK 465 THR A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 LYS A 29 REMARK 465 GLY A 30 REMARK 465 MET A 138 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 HIS A 497 REMARK 465 MET B 22 REMARK 465 ALA B 23 REMARK 465 LYS B 24 REMARK 465 LYS B 25 REMARK 465 THR B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 LYS B 29 REMARK 465 GLY B 30 REMARK 465 MET B 138 REMARK 465 GLY B 139 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 HIS B 497 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 359 O PRO B 406 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 41 -53.54 69.58 REMARK 500 ASN A 52 71.09 -153.65 REMARK 500 TYR A 93 47.56 -108.92 REMARK 500 GLN A 141 -3.61 76.15 REMARK 500 GLN A 162 65.53 28.23 REMARK 500 LEU A 171 -63.40 -123.30 REMARK 500 MET A 347 72.66 -119.99 REMARK 500 THR A 362 64.66 33.97 REMARK 500 ASN A 367 -170.72 60.47 REMARK 500 ARG A 379 -114.45 58.06 REMARK 500 SER A 431 -155.74 67.76 REMARK 500 ILE B 41 -49.26 69.67 REMARK 500 TYR B 93 47.16 -140.98 REMARK 500 PHE B 106 41.38 -106.71 REMARK 500 ILE B 114 -54.52 -120.80 REMARK 500 LEU B 171 -60.77 -123.62 REMARK 500 ARG B 186 25.77 46.74 REMARK 500 CYS B 261 63.42 -168.77 REMARK 500 SER B 336 -32.48 -135.05 REMARK 500 MET B 347 73.36 -116.24 REMARK 500 THR B 362 64.61 33.22 REMARK 500 ASN B 367 -169.81 64.02 REMARK 500 ARG B 379 -116.67 50.37 REMARK 500 PRO B 404 -48.69 -29.38 REMARK 500 ASP B 405 74.94 -115.12 REMARK 500 SER B 431 -161.74 75.14 REMARK 500 CYS B 437 121.57 -32.05 REMARK 500 PRO B 466 -31.14 -38.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 437 SG REMARK 620 2 HEM A 500 NA 100.4 REMARK 620 3 HEM A 500 NB 84.8 90.2 REMARK 620 4 HEM A 500 NC 85.7 173.6 88.9 REMARK 620 5 HEM A 500 ND 99.3 93.9 173.6 86.5 REMARK 620 6 LZ1 A 501 N2 172.4 85.6 90.6 88.2 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 437 SG REMARK 620 2 HEM B 500 NA 101.3 REMARK 620 3 HEM B 500 NB 84.6 87.8 REMARK 620 4 HEM B 500 NC 85.8 172.6 91.3 REMARK 620 5 HEM B 500 ND 101.3 92.7 173.9 87.4 REMARK 620 6 LZ1 B 501 N2 167.5 84.0 84.3 88.7 89.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LZ1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LZ1 B 501 DBREF 3E6I A 32 493 UNP P05181 CP2E1_HUMAN 32 493 DBREF 3E6I B 32 493 UNP P05181 CP2E1_HUMAN 32 493 SEQADV 3E6I MET A 22 UNP P05181 EXPRESSION TAG SEQADV 3E6I ALA A 23 UNP P05181 EXPRESSION TAG SEQADV 3E6I LYS A 24 UNP P05181 EXPRESSION TAG SEQADV 3E6I LYS A 25 UNP P05181 EXPRESSION TAG SEQADV 3E6I THR A 26 UNP P05181 EXPRESSION TAG SEQADV 3E6I SER A 27 UNP P05181 EXPRESSION TAG SEQADV 3E6I SER A 28 UNP P05181 EXPRESSION TAG SEQADV 3E6I LYS A 29 UNP P05181 EXPRESSION TAG SEQADV 3E6I GLY A 30 UNP P05181 EXPRESSION TAG SEQADV 3E6I LYS A 31 UNP P05181 EXPRESSION TAG SEQADV 3E6I HIS A 494 UNP P05181 EXPRESSION TAG SEQADV 3E6I HIS A 495 UNP P05181 EXPRESSION TAG SEQADV 3E6I HIS A 496 UNP P05181 EXPRESSION TAG SEQADV 3E6I HIS A 497 UNP P05181 EXPRESSION TAG SEQADV 3E6I MET B 22 UNP P05181 EXPRESSION TAG SEQADV 3E6I ALA B 23 UNP P05181 EXPRESSION TAG SEQADV 3E6I LYS B 24 UNP P05181 EXPRESSION TAG SEQADV 3E6I LYS B 25 UNP P05181 EXPRESSION TAG SEQADV 3E6I THR B 26 UNP P05181 EXPRESSION TAG SEQADV 3E6I SER B 27 UNP P05181 EXPRESSION TAG SEQADV 3E6I SER B 28 UNP P05181 EXPRESSION TAG SEQADV 3E6I LYS B 29 UNP P05181 EXPRESSION TAG SEQADV 3E6I GLY B 30 UNP P05181 EXPRESSION TAG SEQADV 3E6I LYS B 31 UNP P05181 EXPRESSION TAG SEQADV 3E6I HIS B 494 UNP P05181 EXPRESSION TAG SEQADV 3E6I HIS B 495 UNP P05181 EXPRESSION TAG SEQADV 3E6I HIS B 496 UNP P05181 EXPRESSION TAG SEQADV 3E6I HIS B 497 UNP P05181 EXPRESSION TAG SEQRES 1 A 476 MET ALA LYS LYS THR SER SER LYS GLY LYS LEU PRO PRO SEQRES 2 A 476 GLY PRO PHE PRO LEU PRO ILE ILE GLY ASN LEU PHE GLN SEQRES 3 A 476 LEU GLU LEU LYS ASN ILE PRO LYS SER PHE THR ARG LEU SEQRES 4 A 476 ALA GLN ARG PHE GLY PRO VAL PHE THR LEU TYR VAL GLY SEQRES 5 A 476 SER GLN ARG MET VAL VAL MET HIS GLY TYR LYS ALA VAL SEQRES 6 A 476 LYS GLU ALA LEU LEU ASP TYR LYS ASP GLU PHE SER GLY SEQRES 7 A 476 ARG GLY ASP LEU PRO ALA PHE HIS ALA HIS ARG ASP ARG SEQRES 8 A 476 GLY ILE ILE PHE ASN ASN GLY PRO THR TRP LYS ASP ILE SEQRES 9 A 476 ARG ARG PHE SER LEU THR THR LEU ARG ASN TYR GLY MET SEQRES 10 A 476 GLY LYS GLN GLY ASN GLU SER ARG ILE GLN ARG GLU ALA SEQRES 11 A 476 HIS PHE LEU LEU GLU ALA LEU ARG LYS THR GLN GLY GLN SEQRES 12 A 476 PRO PHE ASP PRO THR PHE LEU ILE GLY CYS ALA PRO CYS SEQRES 13 A 476 ASN VAL ILE ALA ASP ILE LEU PHE ARG LYS HIS PHE ASP SEQRES 14 A 476 TYR ASN ASP GLU LYS PHE LEU ARG LEU MET TYR LEU PHE SEQRES 15 A 476 ASN GLU ASN PHE HIS LEU LEU SER THR PRO TRP LEU GLN SEQRES 16 A 476 LEU TYR ASN ASN PHE PRO SER PHE LEU HIS TYR LEU PRO SEQRES 17 A 476 GLY SER HIS ARG LYS VAL ILE LYS ASN VAL ALA GLU VAL SEQRES 18 A 476 LYS GLU TYR VAL SER GLU ARG VAL LYS GLU HIS HIS GLN SEQRES 19 A 476 SER LEU ASP PRO ASN CYS PRO ARG ASP LEU THR ASP CYS SEQRES 20 A 476 LEU LEU VAL GLU MET GLU LYS GLU LYS HIS SER ALA GLU SEQRES 21 A 476 ARG LEU TYR THR MET ASP GLY ILE THR VAL THR VAL ALA SEQRES 22 A 476 ASP LEU PHE PHE ALA GLY THR GLU THR THR SER THR THR SEQRES 23 A 476 LEU ARG TYR GLY LEU LEU ILE LEU MET LYS TYR PRO GLU SEQRES 24 A 476 ILE GLU GLU LYS LEU HIS GLU GLU ILE ASP ARG VAL ILE SEQRES 25 A 476 GLY PRO SER ARG ILE PRO ALA ILE LYS ASP ARG GLN GLU SEQRES 26 A 476 MET PRO TYR MET ASP ALA VAL VAL HIS GLU ILE GLN ARG SEQRES 27 A 476 PHE ILE THR LEU VAL PRO SER ASN LEU PRO HIS GLU ALA SEQRES 28 A 476 THR ARG ASP THR ILE PHE ARG GLY TYR LEU ILE PRO LYS SEQRES 29 A 476 GLY THR VAL VAL VAL PRO THR LEU ASP SER VAL LEU TYR SEQRES 30 A 476 ASP ASN GLN GLU PHE PRO ASP PRO GLU LYS PHE LYS PRO SEQRES 31 A 476 GLU HIS PHE LEU ASN GLU ASN GLY LYS PHE LYS TYR SER SEQRES 32 A 476 ASP TYR PHE LYS PRO PHE SER THR GLY LYS ARG VAL CYS SEQRES 33 A 476 ALA GLY GLU GLY LEU ALA ARG MET GLU LEU PHE LEU LEU SEQRES 34 A 476 LEU CYS ALA ILE LEU GLN HIS PHE ASN LEU LYS PRO LEU SEQRES 35 A 476 VAL ASP PRO LYS ASP ILE ASP LEU SER PRO ILE HIS ILE SEQRES 36 A 476 GLY PHE GLY CYS ILE PRO PRO ARG TYR LYS LEU CYS VAL SEQRES 37 A 476 ILE PRO ARG SER HIS HIS HIS HIS SEQRES 1 B 476 MET ALA LYS LYS THR SER SER LYS GLY LYS LEU PRO PRO SEQRES 2 B 476 GLY PRO PHE PRO LEU PRO ILE ILE GLY ASN LEU PHE GLN SEQRES 3 B 476 LEU GLU LEU LYS ASN ILE PRO LYS SER PHE THR ARG LEU SEQRES 4 B 476 ALA GLN ARG PHE GLY PRO VAL PHE THR LEU TYR VAL GLY SEQRES 5 B 476 SER GLN ARG MET VAL VAL MET HIS GLY TYR LYS ALA VAL SEQRES 6 B 476 LYS GLU ALA LEU LEU ASP TYR LYS ASP GLU PHE SER GLY SEQRES 7 B 476 ARG GLY ASP LEU PRO ALA PHE HIS ALA HIS ARG ASP ARG SEQRES 8 B 476 GLY ILE ILE PHE ASN ASN GLY PRO THR TRP LYS ASP ILE SEQRES 9 B 476 ARG ARG PHE SER LEU THR THR LEU ARG ASN TYR GLY MET SEQRES 10 B 476 GLY LYS GLN GLY ASN GLU SER ARG ILE GLN ARG GLU ALA SEQRES 11 B 476 HIS PHE LEU LEU GLU ALA LEU ARG LYS THR GLN GLY GLN SEQRES 12 B 476 PRO PHE ASP PRO THR PHE LEU ILE GLY CYS ALA PRO CYS SEQRES 13 B 476 ASN VAL ILE ALA ASP ILE LEU PHE ARG LYS HIS PHE ASP SEQRES 14 B 476 TYR ASN ASP GLU LYS PHE LEU ARG LEU MET TYR LEU PHE SEQRES 15 B 476 ASN GLU ASN PHE HIS LEU LEU SER THR PRO TRP LEU GLN SEQRES 16 B 476 LEU TYR ASN ASN PHE PRO SER PHE LEU HIS TYR LEU PRO SEQRES 17 B 476 GLY SER HIS ARG LYS VAL ILE LYS ASN VAL ALA GLU VAL SEQRES 18 B 476 LYS GLU TYR VAL SER GLU ARG VAL LYS GLU HIS HIS GLN SEQRES 19 B 476 SER LEU ASP PRO ASN CYS PRO ARG ASP LEU THR ASP CYS SEQRES 20 B 476 LEU LEU VAL GLU MET GLU LYS GLU LYS HIS SER ALA GLU SEQRES 21 B 476 ARG LEU TYR THR MET ASP GLY ILE THR VAL THR VAL ALA SEQRES 22 B 476 ASP LEU PHE PHE ALA GLY THR GLU THR THR SER THR THR SEQRES 23 B 476 LEU ARG TYR GLY LEU LEU ILE LEU MET LYS TYR PRO GLU SEQRES 24 B 476 ILE GLU GLU LYS LEU HIS GLU GLU ILE ASP ARG VAL ILE SEQRES 25 B 476 GLY PRO SER ARG ILE PRO ALA ILE LYS ASP ARG GLN GLU SEQRES 26 B 476 MET PRO TYR MET ASP ALA VAL VAL HIS GLU ILE GLN ARG SEQRES 27 B 476 PHE ILE THR LEU VAL PRO SER ASN LEU PRO HIS GLU ALA SEQRES 28 B 476 THR ARG ASP THR ILE PHE ARG GLY TYR LEU ILE PRO LYS SEQRES 29 B 476 GLY THR VAL VAL VAL PRO THR LEU ASP SER VAL LEU TYR SEQRES 30 B 476 ASP ASN GLN GLU PHE PRO ASP PRO GLU LYS PHE LYS PRO SEQRES 31 B 476 GLU HIS PHE LEU ASN GLU ASN GLY LYS PHE LYS TYR SER SEQRES 32 B 476 ASP TYR PHE LYS PRO PHE SER THR GLY LYS ARG VAL CYS SEQRES 33 B 476 ALA GLY GLU GLY LEU ALA ARG MET GLU LEU PHE LEU LEU SEQRES 34 B 476 LEU CYS ALA ILE LEU GLN HIS PHE ASN LEU LYS PRO LEU SEQRES 35 B 476 VAL ASP PRO LYS ASP ILE ASP LEU SER PRO ILE HIS ILE SEQRES 36 B 476 GLY PHE GLY CYS ILE PRO PRO ARG TYR LYS LEU CYS VAL SEQRES 37 B 476 ILE PRO ARG SER HIS HIS HIS HIS HET HEM A 500 43 HET LZ1 A 501 9 HET HEM B 500 43 HET LZ1 B 501 9 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM LZ1 1H-INDAZOLE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 LZ1 2(C7 H6 N2) FORMUL 7 HOH *171(H2 O) HELIX 1 1 ASN A 44 LEU A 48 5 5 HELIX 2 2 ASN A 52 GLY A 65 1 14 HELIX 3 3 GLY A 82 ASP A 92 1 11 HELIX 4 4 LEU A 103 ARG A 110 5 8 HELIX 5 5 THR A 121 TYR A 136 1 16 HELIX 6 6 GLN A 141 LYS A 160 1 20 HELIX 7 7 PRO A 168 GLY A 173 1 6 HELIX 8 8 GLY A 173 ARG A 186 1 14 HELIX 9 9 ASP A 193 LEU A 210 1 18 HELIX 10 10 THR A 212 PHE A 221 1 10 HELIX 11 11 PHE A 221 HIS A 226 1 6 HELIX 12 12 GLY A 230 SER A 256 1 27 HELIX 13 13 ASP A 264 LYS A 275 1 12 HELIX 14 14 THR A 285 TYR A 318 1 34 HELIX 15 15 TYR A 318 ILE A 333 1 16 HELIX 16 16 ALA A 340 GLU A 346 5 7 HELIX 17 17 MET A 347 THR A 362 1 16 HELIX 18 18 LEU A 393 TYR A 398 1 6 HELIX 19 19 LYS A 410 LEU A 415 5 6 HELIX 20 20 GLY A 439 HIS A 457 1 19 HELIX 21 21 ASN B 44 LEU B 48 5 5 HELIX 22 22 ASN B 52 GLY B 65 1 14 HELIX 23 23 GLY B 82 ASP B 92 1 11 HELIX 24 24 LEU B 103 ARG B 110 5 8 HELIX 25 25 THR B 121 TYR B 136 1 16 HELIX 26 26 LYS B 140 THR B 161 1 22 HELIX 27 27 PRO B 168 GLY B 173 1 6 HELIX 28 28 GLY B 173 ARG B 186 1 14 HELIX 29 29 ASP B 193 LEU B 210 1 18 HELIX 30 30 THR B 212 PHE B 221 1 10 HELIX 31 31 PHE B 221 HIS B 226 1 6 HELIX 32 32 GLY B 230 SER B 256 1 27 HELIX 33 33 ASP B 264 LYS B 275 1 12 HELIX 34 34 THR B 285 TYR B 318 1 34 HELIX 35 35 TYR B 318 ILE B 333 1 16 HELIX 36 36 ALA B 340 GLU B 346 5 7 HELIX 37 37 MET B 347 THR B 362 1 16 HELIX 38 38 LEU B 393 TYR B 398 1 6 HELIX 39 39 LYS B 410 LEU B 415 5 6 HELIX 40 40 THR B 432 VAL B 436 5 5 HELIX 41 41 GLY B 439 HIS B 457 1 19 HELIX 42 42 ASP B 465 ILE B 469 5 5 SHEET 1 A 5 VAL A 67 VAL A 72 0 SHEET 2 A 5 GLN A 75 MET A 80 -1 O MET A 77 N LEU A 70 SHEET 3 A 5 VAL A 388 PRO A 391 1 O VAL A 390 N MET A 80 SHEET 4 A 5 HIS A 370 GLU A 371 -1 N HIS A 370 O VAL A 389 SHEET 5 A 5 GLY A 99 ARG A 100 -1 N GLY A 99 O GLU A 371 SHEET 1 B 2 THR A 376 PHE A 378 0 SHEET 2 B 2 TYR A 381 ILE A 383 -1 O ILE A 383 N THR A 376 SHEET 1 C 2 PHE A 458 PRO A 462 0 SHEET 2 C 2 LEU A 487 PRO A 491 -1 O CYS A 488 N LYS A 461 SHEET 1 D 2 HIS A 475 ILE A 476 0 SHEET 2 D 2 CYS A 480 ILE A 481 -1 O ILE A 481 N HIS A 475 SHEET 1 E 5 VAL B 67 VAL B 72 0 SHEET 2 E 5 GLN B 75 MET B 80 -1 O MET B 77 N LEU B 70 SHEET 3 E 5 VAL B 388 PRO B 391 1 O VAL B 390 N VAL B 78 SHEET 4 E 5 HIS B 370 GLU B 371 -1 N HIS B 370 O VAL B 389 SHEET 5 E 5 GLY B 99 ARG B 100 -1 N GLY B 99 O GLU B 371 SHEET 1 F 2 THR B 376 PHE B 378 0 SHEET 2 F 2 TYR B 381 ILE B 383 -1 O ILE B 383 N THR B 376 SHEET 1 G 2 PHE B 458 PRO B 462 0 SHEET 2 G 2 LEU B 487 PRO B 491 -1 O CYS B 488 N LYS B 461 SHEET 1 H 2 HIS B 475 ILE B 476 0 SHEET 2 H 2 CYS B 480 ILE B 481 -1 O ILE B 481 N HIS B 475 LINK SG CYS A 437 FE HEM A 500 1555 1555 2.28 LINK FE HEM A 500 N2 LZ1 A 501 1555 1555 2.19 LINK SG CYS B 437 FE HEM B 500 1555 1555 2.39 LINK FE HEM B 500 N2 LZ1 B 501 1555 1555 2.22 SITE 1 AC1 21 ARG A 100 ILE A 114 ILE A 115 TRP A 122 SITE 2 AC1 21 ARG A 126 LEU A 296 ALA A 299 GLY A 300 SITE 3 AC1 21 THR A 303 THR A 304 THR A 307 ASN A 367 SITE 4 AC1 21 HIS A 370 PRO A 429 PHE A 430 SER A 431 SITE 5 AC1 21 ARG A 435 CYS A 437 ALA A 438 GLY A 439 SITE 6 AC1 21 ALA A 443 SITE 1 AC2 4 PHE A 298 ALA A 299 THR A 303 PHE A 478 SITE 1 AC3 21 ARG B 100 ILE B 114 ILE B 115 TRP B 122 SITE 2 AC3 21 ARG B 126 ILE B 180 ALA B 299 GLY B 300 SITE 3 AC3 21 THR B 303 THR B 307 ASN B 367 LEU B 368 SITE 4 AC3 21 HIS B 370 PRO B 429 PHE B 430 SER B 431 SITE 5 AC3 21 ARG B 435 CYS B 437 ALA B 438 GLY B 439 SITE 6 AC3 21 ALA B 443 SITE 1 AC4 4 PHE B 298 ALA B 299 THR B 303 PHE B 478 CRYST1 71.083 71.083 225.170 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004441 0.00000