HEADER HYDROLASE 21-AUG-08 3E90 TITLE WEST NILE VI RUS NS2B-NS3PROTEASE IN COMPLEXED WITH INHIBITOR NAPH- TITLE 2 KKR-H COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS2B COFACTOR; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NS3 PROTEASE; COMPND 7 CHAIN: B, D; COMPND 8 EC: 3.4.21.91; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WEST NILE VIRUS; SOURCE 3 ORGANISM_COMMON: WNV; SOURCE 4 ORGANISM_TAXID: 11082; SOURCE 5 STRAIN: WNV NY99-4132; SOURCE 6 GENE: NS2B-NS3PROTEASE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SG13009; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQE60; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: WEST NILE VIRUS; SOURCE 14 ORGANISM_COMMON: WNV; SOURCE 15 ORGANISM_TAXID: 11082; SOURCE 16 STRAIN: WNV NY99-4132; SOURCE 17 GENE: NS2B-NS3PROTEASE; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: SG13009; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS WEST NILE VIRUS, NS3 PROTEASE, TRYPSIN-LIKE SERINE PROTEASE, PROTEASE KEYWDS 2 INHIBITOR, CATALYTIC HISTIDINE, INDUCED FIT, ATP-BINDING, CAPSID KEYWDS 3 PROTEIN, HELICASE, HYDROLASE, NUCLEOTIDE-BINDING, RNA REPLICATION, KEYWDS 4 TRANSMEMBRANE, VIRION EXPDTA X-RAY DIFFRACTION AUTHOR J.L.MARTIN,G.ROBIN REVDAT 3 01-NOV-23 3E90 1 REMARK DBREF LINK REVDAT 2 26-MAY-09 3E90 1 JRNL REMARK REVDAT 1 20-JAN-09 3E90 0 JRNL AUTH G.ROBIN,K.CHAPPELL,M.J.STOERMER,S.-H.HU,P.R.YOUNG, JRNL AUTH 2 D.P.FAIRLIE,J.L.MARTIN JRNL TITL STRUCTURE OF WEST NILE VIRUS NS3 PROTEASE: LIGAND JRNL TITL 2 STABILIZATION OF THE CATALYTIC CONFORMATION JRNL REF J.MOL.BIOL. V. 385 1568 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19059417 JRNL DOI 10.1016/J.JMB.2008.11.026 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 19212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 917 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 80 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3262 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.31800 REMARK 3 B22 (A**2) : 2.89100 REMARK 3 B33 (A**2) : 3.42700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.430 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.706 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.319 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.874 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.766 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 44.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER.PARAM REMARK 3 PARAMETER FILE 3 : INHIB-C-24-PAR+PATCH.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC CONFOCAL VARIMAX HF REMARK 200 OPTICS : OSMIC CONFOCAL MAX-FLUX (HIRES2) REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2FP7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.90900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.90900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.75550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.95750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.75550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.95750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.90900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.75550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.95750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.90900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.75550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 82.95750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EACH BIOLOGICAL UNIT CONSISTS OF COFACTOR(A OR C) AND REMARK 300 PROTEASE(C OR D) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 48 REMARK 465 GLY A 49 REMARK 465 THR A 50 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 PRO B 176 REMARK 465 ALA B 177 REMARK 465 GLY B 178 REMARK 465 PHE B 179 REMARK 465 GLU B 180 REMARK 465 PRO B 181 REMARK 465 GLU B 182 REMARK 465 MET B 183 REMARK 465 LEU B 184 REMARK 465 GLY B 185 REMARK 465 SER B 186 REMARK 465 ARG B 187 REMARK 465 SER B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 MET C 48 REMARK 465 ASP C 90 REMARK 465 PRO C 91 REMARK 465 GLY C 92 REMARK 465 ALA C 93 REMARK 465 GLY C 94 REMARK 465 GLY C 95 REMARK 465 GLY C 96 REMARK 465 GLY C 97 REMARK 465 SER D -3 REMARK 465 GLY D -2 REMARK 465 GLY D -1 REMARK 465 GLY D 0 REMARK 465 ASP D 6 REMARK 465 THR D 7 REMARK 465 PRO D 8 REMARK 465 SER D 9 REMARK 465 PRO D 10 REMARK 465 LYS D 11 REMARK 465 GLU D 12 REMARK 465 ILE D 175 REMARK 465 PRO D 176 REMARK 465 ALA D 177 REMARK 465 GLY D 178 REMARK 465 PHE D 179 REMARK 465 GLU D 180 REMARK 465 PRO D 181 REMARK 465 GLU D 182 REMARK 465 MET D 183 REMARK 465 LEU D 184 REMARK 465 GLY D 185 REMARK 465 SER D 186 REMARK 465 ARG D 187 REMARK 465 SER D 188 REMARK 465 HIS D 189 REMARK 465 HIS D 190 REMARK 465 HIS D 191 REMARK 465 HIS D 192 REMARK 465 HIS D 193 REMARK 465 HIS D 194 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 11 CB CG CD CE NZ REMARK 480 TYR D 13 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR D 13 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 57 -3.01 -141.53 REMARK 500 ASP A 65 35.49 -99.89 REMARK 500 VAL B 3 134.06 -177.51 REMARK 500 GLN B 92 -45.95 -134.45 REMARK 500 VAL B 100 72.88 -107.80 REMARK 500 PRO B 131 157.38 -47.54 REMARK 500 SER C 72 46.30 -94.23 REMARK 500 GLN D 86 -22.12 -143.12 REMARK 500 GLN D 92 -23.59 -141.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THIS LIGAND CAN BE CALLED AS 2-NAPHTHOYL-LYS-LYS-ARG-H. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NKK B 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NKK D 195 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE HAS BEEN DEPOSITED ON GB WITH ACCESSION CODE, REMARK 999 FM867597. IT WILL SHOW UP IN UNIPROT LATER. REMARK 999 THE FIRST TWO RESIDUES MG AND LAST FOUR RESIDUES GGGG IN REMARK 999 CHAINS A & C ARE EXPRESSION TAGS AND LINKER, RESPECTIVELY. REMARK 999 IN CHAINS B & D, THE FIRST FOUR RESIDUES SGGG ARE LINKER. REMARK 999 THE LAST FOUR RESIDUES GSRS AND FOLLOWING SIX RESIDUES REMARK 999 HHHHHH ARE LINKER AND EXPRESSION TAGS, RESPECTIVELY. DBREF 3E90 A 48 97 PDB 3E90 3E90 48 97 DBREF 3E90 B -3 194 PDB 3E90 3E90 -3 194 DBREF 3E90 C 48 97 PDB 3E90 3E90 48 97 DBREF 3E90 D -3 194 PDB 3E90 3E90 -3 194 SEQRES 1 A 50 MET GLY THR ASP MET TRP ILE GLU ARG THR ALA ASP ILE SEQRES 2 A 50 SER TRP GLU SER ASP ALA GLU ILE THR GLY SER SER GLU SEQRES 3 A 50 ARG VAL ASP VAL ARG LEU ASP ASP ASP GLY ASN PHE GLN SEQRES 4 A 50 LEU MET ASN ASP PRO GLY ALA GLY GLY GLY GLY SEQRES 1 B 198 SER GLY GLY GLY GLY GLY VAL LEU TRP ASP THR PRO SER SEQRES 2 B 198 PRO LYS GLU TYR LYS LYS GLY ASP THR THR THR GLY VAL SEQRES 3 B 198 TYR ARG ILE MET THR ARG GLY LEU LEU GLY SER TYR GLN SEQRES 4 B 198 ALA GLY ALA GLY VAL MET VAL GLU GLY VAL PHE HIS THR SEQRES 5 B 198 LEU TRP HIS THR THR LYS GLY ALA ALA LEU MET SER GLY SEQRES 6 B 198 GLU GLY ARG LEU ASP PRO TYR TRP GLY SER VAL LYS GLU SEQRES 7 B 198 ASP ARG LEU CYS TYR GLY GLY PRO TRP LYS LEU GLN HIS SEQRES 8 B 198 LYS TRP ASN GLY GLN ASP GLU VAL GLN MET ILE VAL VAL SEQRES 9 B 198 GLU PRO GLY LYS ASN VAL LYS ASN VAL ARG THR LYS PRO SEQRES 10 B 198 GLY VAL PHE LYS THR PRO GLU GLY GLU ILE GLY ALA VAL SEQRES 11 B 198 THR LEU ASP PHE PRO THR GLY THR SER GLY SER PRO ILE SEQRES 12 B 198 VAL ASP LYS ASN GLY ASP VAL ILE GLY LEU TYR GLY ASN SEQRES 13 B 198 GLY VAL ILE MET PRO ASN GLY SER TYR ILE SER ALA ILE SEQRES 14 B 198 VAL GLN GLY LYS ARG MET ASP GLU PRO ILE PRO ALA GLY SEQRES 15 B 198 PHE GLU PRO GLU MET LEU GLY SER ARG SER HIS HIS HIS SEQRES 16 B 198 HIS HIS HIS SEQRES 1 C 50 MET GLY THR ASP MET TRP ILE GLU ARG THR ALA ASP ILE SEQRES 2 C 50 SER TRP GLU SER ASP ALA GLU ILE THR GLY SER SER GLU SEQRES 3 C 50 ARG VAL ASP VAL ARG LEU ASP ASP ASP GLY ASN PHE GLN SEQRES 4 C 50 LEU MET ASN ASP PRO GLY ALA GLY GLY GLY GLY SEQRES 1 D 198 SER GLY GLY GLY GLY GLY VAL LEU TRP ASP THR PRO SER SEQRES 2 D 198 PRO LYS GLU TYR LYS LYS GLY ASP THR THR THR GLY VAL SEQRES 3 D 198 TYR ARG ILE MET THR ARG GLY LEU LEU GLY SER TYR GLN SEQRES 4 D 198 ALA GLY ALA GLY VAL MET VAL GLU GLY VAL PHE HIS THR SEQRES 5 D 198 LEU TRP HIS THR THR LYS GLY ALA ALA LEU MET SER GLY SEQRES 6 D 198 GLU GLY ARG LEU ASP PRO TYR TRP GLY SER VAL LYS GLU SEQRES 7 D 198 ASP ARG LEU CYS TYR GLY GLY PRO TRP LYS LEU GLN HIS SEQRES 8 D 198 LYS TRP ASN GLY GLN ASP GLU VAL GLN MET ILE VAL VAL SEQRES 9 D 198 GLU PRO GLY LYS ASN VAL LYS ASN VAL ARG THR LYS PRO SEQRES 10 D 198 GLY VAL PHE LYS THR PRO GLU GLY GLU ILE GLY ALA VAL SEQRES 11 D 198 THR LEU ASP PHE PRO THR GLY THR SER GLY SER PRO ILE SEQRES 12 D 198 VAL ASP LYS ASN GLY ASP VAL ILE GLY LEU TYR GLY ASN SEQRES 13 D 198 GLY VAL ILE MET PRO ASN GLY SER TYR ILE SER ALA ILE SEQRES 14 D 198 VAL GLN GLY LYS ARG MET ASP GLU PRO ILE PRO ALA GLY SEQRES 15 D 198 PHE GLU PRO GLU MET LEU GLY SER ARG SER HIS HIS HIS SEQRES 16 D 198 HIS HIS HIS HET NKK B 195 41 HET NKK D 195 41 HETNAM NKK N~2~-(NAPHTHALEN-2-YLCARBONYL)-L-LYSYL-N-[(1S)-4- HETNAM 2 NKK CARBAMIMIDAMIDO-1-FORMYLBUTYL]-L-LYSINAMIDE FORMUL 5 NKK 2(C29 H44 N8 O4) FORMUL 7 HOH *202(H2 O) HELIX 1 1 LEU B 49 THR B 53 5 5 HELIX 2 2 LEU D 49 THR D 53 5 5 SHEET 1 A 8 GLY B 63 LEU B 65 0 SHEET 2 A 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 A 8 MET A 52 ALA A 58 1 N MET A 52 O MET B 59 SHEET 4 A 8 GLY B 21 GLY B 29 -1 O MET B 26 N TRP A 53 SHEET 5 A 8 GLY B 32 VAL B 42 -1 O GLY B 37 N ILE B 25 SHEET 6 A 8 VAL B 45 THR B 48 -1 O VAL B 45 N VAL B 42 SHEET 7 A 8 ARG B 76 TYR B 79 -1 O TYR B 79 N PHE B 46 SHEET 8 A 8 PRO B 67 SER B 71 -1 N TYR B 68 O CYS B 78 SHEET 1 B 5 GLU A 67 ILE A 68 0 SHEET 2 B 5 LYS B 107 THR B 111 1 O ARG B 110 N GLU A 67 SHEET 3 B 5 VAL B 95 VAL B 99 -1 N VAL B 95 O THR B 111 SHEET 4 B 5 PRO B 138 VAL B 140 -1 O VAL B 140 N GLN B 96 SHEET 5 B 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 C 5 ARG A 74 ASP A 76 0 SHEET 2 C 5 GLY B 114 THR B 118 1 O LYS B 117 N VAL A 75 SHEET 3 C 5 GLY B 121 VAL B 126 -1 O ALA B 125 N GLY B 114 SHEET 4 C 5 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 5 C 5 GLY B 153 ILE B 155 -1 N VAL B 154 O ILE B 162 SHEET 1 D 2 ARG A 78 LEU A 79 0 SHEET 2 D 2 PHE A 85 GLN A 86 -1 O GLN A 86 N ARG A 78 SHEET 1 E 7 MET C 52 ALA C 58 0 SHEET 2 E 7 GLY D 21 THR D 27 -1 O VAL D 22 N ALA C 58 SHEET 3 E 7 TYR D 34 VAL D 42 -1 O MET D 41 N GLY D 21 SHEET 4 E 7 VAL D 45 THR D 48 -1 O VAL D 45 N VAL D 42 SHEET 5 E 7 ARG D 76 TYR D 79 -1 O TYR D 79 N PHE D 46 SHEET 6 E 7 PRO D 67 SER D 71 -1 N TYR D 68 O CYS D 78 SHEET 7 E 7 VAL D 3 LEU D 4 -1 N VAL D 3 O GLY D 70 SHEET 1 F 6 PHE C 85 LEU C 87 0 SHEET 2 F 6 ARG C 74 LEU C 79 -1 N ARG C 78 O GLN C 86 SHEET 3 F 6 GLY D 114 THR D 118 1 O LYS D 117 N VAL C 75 SHEET 4 F 6 GLY D 121 VAL D 126 -1 O ALA D 125 N GLY D 114 SHEET 5 F 6 TYR D 161 ALA D 164 -1 O SER D 163 N VAL D 126 SHEET 6 F 6 GLY D 153 ILE D 155 -1 N VAL D 154 O ILE D 162 SHEET 1 G 2 LEU D 58 SER D 60 0 SHEET 2 G 2 GLY D 63 LEU D 65 -1 O LEU D 65 N LEU D 58 SHEET 1 H 4 LYS D 107 THR D 111 0 SHEET 2 H 4 VAL D 95 VAL D 99 -1 N VAL D 95 O THR D 111 SHEET 3 H 4 PRO D 138 VAL D 140 -1 O VAL D 140 N GLN D 96 SHEET 4 H 4 VAL D 146 LEU D 149 -1 O ILE D 147 N ILE D 139 LINK OG SER B 135 CAW NKK B 195 1555 1555 1.43 LINK OG SER D 135 CAW NKK D 195 1555 1555 1.43 SITE 1 AC1 27 GLY A 83 ASN A 84 PHE A 85 GLN A 86 SITE 2 AC1 27 ASP A 90 HOH A 120 HIS B 51 ASP B 75 SITE 3 AC1 27 ASP B 129 PHE B 130 THR B 132 GLY B 133 SITE 4 AC1 27 THR B 134 SER B 135 GLY B 151 ASN B 152 SITE 5 AC1 27 GLY B 153 TYR B 161 HOH B 214 HOH B 231 SITE 6 AC1 27 HOH B 240 HOH B 273 HOH B 275 TRP D 89 SITE 7 AC1 27 ASN D 90 GLN D 92 GLU D 122 SITE 1 AC2 25 VAL A 77 ARG A 78 GLN A 86 LEU A 87 SITE 2 AC2 25 MET A 88 GLY A 94 HOH A 104 HOH A 111 SITE 3 AC2 25 GLY C 83 ASN C 84 PHE C 85 GLN C 86 SITE 4 AC2 25 HIS D 51 ASP D 75 ASP D 129 PHE D 130 SITE 5 AC2 25 THR D 132 SER D 135 GLY D 151 ASN D 152 SITE 6 AC2 25 GLY D 153 TYR D 161 HOH D 228 HOH D 237 SITE 7 AC2 25 HOH D 243 CRYST1 87.511 165.915 79.818 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012529 0.00000