HEADER LIGASE 21-AUG-08 3E95 TITLE CRYSTAL STRUCTURE OF THE PLASMODIUM FALCIPARUM UBIQUITIN CONJUGATING TITLE 2 ENZYME COMPLEX, PFUBC13-PFUEV1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARRIER PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PFE1350C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P15-MHL; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 11 ORGANISM_TAXID: 36329; SOURCE 12 GENE: MAL3P2.20, PFC0255C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: P15-MHL KEYWDS MALARIA UBIQUITIN COMPLEX STRUCTURAL GENOMICS, LIGASE, UBL KEYWDS 2 CONJUGATION PATHWAY, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,A.LAM,A.ALI,S.BROKX,Y.H.LIN,Y.ZHAO,J.LEW, AUTHOR 2 M.RAVICHANDRAN,G.WASNEY,M.VEDADI,I.KOZIERADZKI,M.SCHAPIRA, AUTHOR 3 A.BOCHKAREV,M.WILKSTROM,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,R.HUI, AUTHOR 4 W.QIU,V.B.BRAND,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 25-OCT-17 3E95 1 REMARK REVDAT 4 18-SEP-13 3E95 1 REMARK VERSN REVDAT 3 18-AUG-09 3E95 1 AUTHOR JRNL REVDAT 2 24-FEB-09 3E95 1 VERSN REVDAT 1 30-SEP-08 3E95 0 JRNL AUTH A.K.WERNIMONT,A.LAM,A.ALI,S.BROKX,Y.H.LIN,Y.ZHAO,J.LEW, JRNL AUTH 2 M.RAVICHANDRAN,G.WASNEY,M.VEDADI,I.KOZIERADZKI,M.SCHAPIRA, JRNL AUTH 3 A.BOCHKAREV,M.WILKSTROM,C.BOUNTRA,C.H.ARROWSMITH, JRNL AUTH 4 A.M.EDWARDS,R.HUI,W.QIU,V.B.BRAND JRNL TITL CRYSTAL STRUCTURE OF THE PLASMODIUM FALCIPARUM UBIQUITIN JRNL TITL 2 CONJUGATING ENZYME COMPLEX, PFUBC13-PFUEV1A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1930 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2649 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -2.43000 REMARK 3 B12 (A**2) : 0.81000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.087 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3533 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4819 ; 0.877 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 4.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;36.590 ;25.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;14.676 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2738 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1522 ; 0.160 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2419 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.131 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2259 ; 0.335 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3570 ; 0.607 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1452 ; 0.445 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1249 ; 0.729 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 116 A 118 5 REMARK 3 1 B 116 B 120 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 8 ; 0.120 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 8 ; 0.730 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 8 ; 0.850 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 8 ; 1.110 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97937 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M MG FORMATE 20 % ETHYLENE GLYCOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.24000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.12000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.68000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.56000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LYS A 90 REMARK 465 VAL A 150 REMARK 465 LEU A 151 REMARK 465 GLY B 1 REMARK 465 PRO B 118 REMARK 465 LEU B 119 REMARK 465 VAL B 150 REMARK 465 LEU B 151 REMARK 465 MET C 1 REMARK 465 HIS C 2 REMARK 465 HIS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 SER C 8 REMARK 465 SER C 9 REMARK 465 GLY C 10 REMARK 465 ARG C 11 REMARK 465 GLU C 12 REMARK 465 ASN C 13 REMARK 465 LEU C 14 REMARK 465 TYR C 15 REMARK 465 PHE C 16 REMARK 465 GLN C 17 REMARK 465 GLY C 18 REMARK 465 MET C 19 REMARK 465 SER C 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CD NE CZ NH1 NH2 REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 LEU A 36 CD1 REMARK 470 LYS A 80 CD CE NZ REMARK 470 ASN A 147 CG OD1 ND2 REMARK 470 ASN A 148 CG OD1 ND2 REMARK 470 ARG B 4 CD NE CZ NH1 NH2 REMARK 470 LYS B 8 CE NZ REMARK 470 LYS B 51 CD CE NZ REMARK 470 GLU C 21 CG CD OE1 OE2 REMARK 470 ARG C 36 CZ NH1 NH2 REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 VAL C 42 CG1 CG2 REMARK 470 ILE C 56 CD1 REMARK 470 GLU C 74 CG CD OE1 OE2 REMARK 470 ILE C 77 CG1 CG2 CD1 REMARK 470 LYS C 146 CE NZ REMARK 470 ARG C 147 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX B 250 UNK UNX B 254 1.46 REMARK 500 UNK UNX B 250 UNK UNX B 251 1.46 REMARK 500 UNK UNX B 250 UNK UNX B 253 1.46 REMARK 500 UNK UNX B 250 UNK UNX B 252 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 117 69.90 -117.63 REMARK 500 LYS B 90 -88.72 -106.48 REMARK 500 LYS B 90 -86.92 -106.48 REMARK 500 LYS B 92 35.38 -85.30 REMARK 500 GLU B 114 77.18 -119.04 REMARK 500 ASN C 41 45.97 -78.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q0V RELATED DB: PDB REMARK 900 RELATED ID: 2R0J RELATED DB: PDB REMARK 900 RELATED ID: 2GMI RELATED DB: PDB DBREF 3E95 A 2 151 UNP Q8I3J4 Q8I3J4_PLAF7 3 152 DBREF 3E95 B 2 151 UNP Q8I3J4 Q8I3J4_PLAF7 3 152 DBREF 3E95 C 19 158 UNP O97241 O97241_PLAF7 1 140 SEQADV 3E95 GLY A 1 UNP Q8I3J4 EXPRESSION TAG SEQADV 3E95 GLY B 1 UNP Q8I3J4 EXPRESSION TAG SEQADV 3E95 MET C 1 UNP O97241 EXPRESSION TAG SEQADV 3E95 HIS C 2 UNP O97241 EXPRESSION TAG SEQADV 3E95 HIS C 3 UNP O97241 EXPRESSION TAG SEQADV 3E95 HIS C 4 UNP O97241 EXPRESSION TAG SEQADV 3E95 HIS C 5 UNP O97241 EXPRESSION TAG SEQADV 3E95 HIS C 6 UNP O97241 EXPRESSION TAG SEQADV 3E95 HIS C 7 UNP O97241 EXPRESSION TAG SEQADV 3E95 SER C 8 UNP O97241 EXPRESSION TAG SEQADV 3E95 SER C 9 UNP O97241 EXPRESSION TAG SEQADV 3E95 GLY C 10 UNP O97241 EXPRESSION TAG SEQADV 3E95 ARG C 11 UNP O97241 EXPRESSION TAG SEQADV 3E95 GLU C 12 UNP O97241 EXPRESSION TAG SEQADV 3E95 ASN C 13 UNP O97241 EXPRESSION TAG SEQADV 3E95 LEU C 14 UNP O97241 EXPRESSION TAG SEQADV 3E95 TYR C 15 UNP O97241 EXPRESSION TAG SEQADV 3E95 PHE C 16 UNP O97241 EXPRESSION TAG SEQADV 3E95 GLN C 17 UNP O97241 EXPRESSION TAG SEQADV 3E95 GLY C 18 UNP O97241 EXPRESSION TAG SEQRES 1 A 151 GLY ILE PRO ARG ARG ILE THR LYS GLU THR GLN ASN LEU SEQRES 2 A 151 ALA ASN GLU PRO PRO PRO GLY ILE MET ALA VAL PRO VAL SEQRES 3 A 151 PRO GLU ASN TYR ARG HIS PHE ASN ILE LEU ILE ASN GLY SEQRES 4 A 151 PRO ASP GLY THR PRO TYR GLU GLY GLY THR TYR LYS LEU SEQRES 5 A 151 GLU LEU PHE LEU PRO GLU GLN TYR PRO MET GLU PRO PRO SEQRES 6 A 151 LYS VAL ARG PHE LEU THR LYS ILE TYR HIS PRO ASN ILE SEQRES 7 A 151 ASP LYS LEU GLY ARG ILE CYS LEU ASP ILE LEU LYS ASP SEQRES 8 A 151 LYS TRP SER PRO ALA LEU GLN ILE ARG THR VAL LEU LEU SEQRES 9 A 151 SER ILE GLN ALA LEU LEU SER SER PRO GLU PRO ASP ASP SEQRES 10 A 151 PRO LEU ASP SER LYS VAL ALA GLU HIS PHE LYS GLN ASP SEQRES 11 A 151 LYS ASN ASP ALA GLU HIS VAL ALA ARG GLN TRP ASN LYS SEQRES 12 A 151 ILE TYR ALA ASN ASN ASN VAL LEU SEQRES 1 B 151 GLY ILE PRO ARG ARG ILE THR LYS GLU THR GLN ASN LEU SEQRES 2 B 151 ALA ASN GLU PRO PRO PRO GLY ILE MET ALA VAL PRO VAL SEQRES 3 B 151 PRO GLU ASN TYR ARG HIS PHE ASN ILE LEU ILE ASN GLY SEQRES 4 B 151 PRO ASP GLY THR PRO TYR GLU GLY GLY THR TYR LYS LEU SEQRES 5 B 151 GLU LEU PHE LEU PRO GLU GLN TYR PRO MET GLU PRO PRO SEQRES 6 B 151 LYS VAL ARG PHE LEU THR LYS ILE TYR HIS PRO ASN ILE SEQRES 7 B 151 ASP LYS LEU GLY ARG ILE CYS LEU ASP ILE LEU LYS ASP SEQRES 8 B 151 LYS TRP SER PRO ALA LEU GLN ILE ARG THR VAL LEU LEU SEQRES 9 B 151 SER ILE GLN ALA LEU LEU SER SER PRO GLU PRO ASP ASP SEQRES 10 B 151 PRO LEU ASP SER LYS VAL ALA GLU HIS PHE LYS GLN ASP SEQRES 11 B 151 LYS ASN ASP ALA GLU HIS VAL ALA ARG GLN TRP ASN LYS SEQRES 12 B 151 ILE TYR ALA ASN ASN ASN VAL LEU SEQRES 1 C 158 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 C 158 LEU TYR PHE GLN GLY MET SER GLU VAL ILE VAL PRO ARG SEQRES 3 C 158 SER PHE ARG LEU LEU ASP GLU LEU GLU ARG GLY GLN LYS SEQRES 4 C 158 GLY ASN VAL SER GLU GLY VAL SER PHE GLY LEU GLU SER SEQRES 5 C 158 ALA ASP ASP ILE THR LEU SER ASN TRP SER CYS THR ILE SEQRES 6 C 158 PHE GLY GLN PRO GLY THR VAL PHE GLU ASN ARG ILE TYR SEQRES 7 C 158 SER LEU THR ILE PHE CYS ASP ASP ASN TYR PRO ASP SER SEQRES 8 C 158 PRO PRO THR VAL LYS PHE ASP THR LYS ILE GLU MET SER SEQRES 9 C 158 CYS VAL ASP ASN CYS GLY ARG VAL ILE LYS ASN ASN LEU SEQRES 10 C 158 HIS ILE LEU LYS ASN TRP ASN ARG ASN TYR THR ILE GLU SEQRES 11 C 158 THR ILE LEU ILE SER LEU ARG GLN GLU MET LEU SER SER SEQRES 12 C 158 ALA ASN LYS ARG LEU PRO GLN PRO ASN GLU GLY GLU VAL SEQRES 13 C 158 TYR SER HET UNX B 250 1 HET UNX B 251 1 HET UNX B 252 1 HET UNX B 253 1 HET UNX B 254 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 4 UNX 5(X) FORMUL 9 HOH *130(H2 O) HELIX 1 1 PRO A 3 GLU A 16 1 14 HELIX 2 2 GLN A 98 SER A 112 1 15 HELIX 3 3 ASP A 120 ASP A 130 1 11 HELIX 4 4 ASP A 130 ALA A 146 1 17 HELIX 5 5 PRO B 3 GLU B 16 1 14 HELIX 6 6 LEU B 86 LYS B 90 5 5 HELIX 7 7 GLN B 98 SER B 112 1 15 HELIX 8 8 SER B 121 ASP B 130 1 10 HELIX 9 9 ASP B 130 ALA B 146 1 17 HELIX 10 10 PRO C 25 GLY C 40 1 16 HELIX 11 11 ILE C 113 ASN C 116 5 4 HELIX 12 12 LEU C 117 ASN C 122 1 6 HELIX 13 13 THR C 128 MET C 140 1 13 HELIX 14 14 SER C 142 ARG C 147 1 6 SHEET 1 A 4 ILE A 21 VAL A 26 0 SHEET 2 A 4 ASN A 29 ASN A 38 -1 O ASN A 34 N VAL A 24 SHEET 3 A 4 THR A 49 PHE A 55 -1 O LEU A 52 N ILE A 35 SHEET 4 A 4 LYS A 66 PHE A 69 -1 O LYS A 66 N PHE A 55 SHEET 1 B 4 ILE B 21 VAL B 26 0 SHEET 2 B 4 ASN B 29 ASN B 38 -1 O HIS B 32 N VAL B 26 SHEET 3 B 4 THR B 49 PHE B 55 -1 O LEU B 54 N PHE B 33 SHEET 4 B 4 LYS B 66 PHE B 69 -1 O LYS B 66 N PHE B 55 SHEET 1 C 4 VAL C 46 LEU C 50 0 SHEET 2 C 4 ASN C 60 PHE C 66 -1 O THR C 64 N SER C 47 SHEET 3 C 4 ILE C 77 PHE C 83 -1 O LEU C 80 N CYS C 63 SHEET 4 C 4 THR C 94 PHE C 97 -1 O LYS C 96 N THR C 81 SSBOND 1 CYS A 85 CYS C 109 1555 1555 2.03 CISPEP 1 TYR A 60 PRO A 61 0 7.39 CISPEP 2 TYR B 60 PRO B 61 0 5.48 CISPEP 3 TYR C 88 PRO C 89 0 4.49 SITE 1 AC1 4 UNX B 251 UNX B 252 UNX B 253 UNX B 254 SITE 1 AC2 5 ASN B 132 UNX B 250 UNX B 252 UNX B 253 SITE 2 AC2 5 UNX B 254 SITE 1 AC3 5 ASP B 130 UNX B 250 UNX B 251 UNX B 253 SITE 2 AC3 5 UNX B 254 SITE 1 AC4 4 UNX B 250 UNX B 251 UNX B 252 UNX B 254 SITE 1 AC5 5 ASP B 130 UNX B 250 UNX B 251 UNX B 252 SITE 2 AC5 5 UNX B 253 CRYST1 154.856 154.856 81.360 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006458 0.003728 0.000000 0.00000 SCALE2 0.000000 0.007457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012291 0.00000