HEADER UNKNOWN FUNCTION 21-AUG-08 3E98 TITLE CRYSTAL STRUCTURE OF A GAF DOMAIN CONTAINING PROTEIN THAT BELONGS TO TITLE 2 PFAM DUF484 FAMILY (PA5279) FROM PSEUDOMONAS AERUGINOSA AT 2.43 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAF DOMAIN OF UNKNOWN FUNCTION; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: NP_253966.1, ORF2332, PA5279; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS GAF DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3E98 1 REMARK SEQADV REVDAT 6 24-JUL-19 3E98 1 REMARK LINK REVDAT 5 25-OCT-17 3E98 1 REMARK REVDAT 4 13-JUL-11 3E98 1 VERSN REVDAT 3 28-JUL-10 3E98 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3E98 1 VERSN REVDAT 1 02-SEP-08 3E98 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A GAF DOMAIN WITH UNKNOWN FUNCTION JRNL TITL 2 (NP_253966.1) FROM PSEUDOMONAS AERUGINOSA AT 2.43 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1044 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1427 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2687 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 59.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.957 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2757 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1871 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3728 ; 1.202 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4531 ; 0.852 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 3.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;26.503 ;22.479 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;13.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3077 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 583 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 552 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1920 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1360 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1511 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 63 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.126 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.338 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.069 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1794 ; 1.595 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 719 ; 0.266 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2805 ; 2.794 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1042 ; 4.548 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 920 ; 6.489 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2506 19.1746 50.4087 REMARK 3 T TENSOR REMARK 3 T11: -0.1229 T22: -0.0148 REMARK 3 T33: -0.0675 T12: 0.0049 REMARK 3 T13: 0.0065 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.4290 L22: 1.9239 REMARK 3 L33: 0.5579 L12: -0.0917 REMARK 3 L13: 0.3304 L23: 0.1551 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: 0.1135 S13: 0.0221 REMARK 3 S21: -0.0788 S22: 0.0809 S23: 0.0219 REMARK 3 S31: -0.0970 S32: 0.0435 S33: -0.0207 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 46 B 225 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4782 17.9224 70.7463 REMARK 3 T TENSOR REMARK 3 T11: -0.0767 T22: 0.0417 REMARK 3 T33: -0.0201 T12: 0.0088 REMARK 3 T13: 0.0038 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.2584 L22: 1.3196 REMARK 3 L33: 0.5683 L12: -0.2458 REMARK 3 L13: 0.0247 L23: 0.0512 REMARK 3 S TENSOR REMARK 3 S11: -0.0969 S12: -0.2253 S13: -0.0912 REMARK 3 S21: 0.2692 S22: 0.1356 S23: 0.0257 REMARK 3 S31: -0.0713 S32: -0.0584 S33: -0.0388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. NCS RESTRAINTS WERE NOT APPLIED DUE TO LARGE DIFFERENCES REMARK 3 BETWEEN THE TWO CHAINS. REMARK 3 5. EDO MODELED ARE PRESENT IN CRYO CONDITION. REMARK 3 6. ELECTRON DENSITY FOR THE HIS-TAGS AND ~50 N-TERMINAL REMARK 3 RESIDUES WAS NOT OBSERVED. AS A RESULT, THE HIS-TAGS REMARK 3 (RESIDUES -18 TO 0 FROM BOTH CHAINS) AND RESIDUES A1-47 REMARK 3 AND B1-45 ARE LIKELY DISORDERED. REMARK 4 REMARK 4 3E98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97975 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 29.412 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0380 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : 0.68900 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M CA(OAC)2, 10.0000% PEG-8000, REMARK 280 0.1M IMIDAZOLE PH 8.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.05700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 GLN A 6 REMARK 465 GLU A 7 REMARK 465 PRO A 8 REMARK 465 THR A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 ASP A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 TYR A 20 REMARK 465 LEU A 21 REMARK 465 SER A 22 REMARK 465 GLN A 23 REMARK 465 HIS A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 26 REMARK 465 PHE A 27 REMARK 465 PHE A 28 REMARK 465 VAL A 29 REMARK 465 GLU A 30 REMARK 465 HIS A 31 REMARK 465 ASP A 32 REMARK 465 GLU A 33 REMARK 465 LEU A 34 REMARK 465 ILE A 35 REMARK 465 PRO A 36 REMARK 465 GLU A 37 REMARK 465 LEU A 38 REMARK 465 ARG A 39 REMARK 465 ILE A 40 REMARK 465 PRO A 41 REMARK 465 HIS A 42 REMARK 465 GLN A 43 REMARK 465 PRO A 44 REMARK 465 GLY A 45 REMARK 465 ASP A 46 REMARK 465 ALA A 47 REMARK 465 SER A 226 REMARK 465 SER A 227 REMARK 465 PRO A 228 REMARK 465 LEU A 229 REMARK 465 ARG A 230 REMARK 465 SER A 231 REMARK 465 VAL A 232 REMARK 465 ARG A 233 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 SER B 5 REMARK 465 GLN B 6 REMARK 465 GLU B 7 REMARK 465 PRO B 8 REMARK 465 THR B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 ASP B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 GLN B 16 REMARK 465 VAL B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 TYR B 20 REMARK 465 LEU B 21 REMARK 465 SER B 22 REMARK 465 GLN B 23 REMARK 465 HIS B 24 REMARK 465 PRO B 25 REMARK 465 GLU B 26 REMARK 465 PHE B 27 REMARK 465 PHE B 28 REMARK 465 VAL B 29 REMARK 465 GLU B 30 REMARK 465 HIS B 31 REMARK 465 ASP B 32 REMARK 465 GLU B 33 REMARK 465 LEU B 34 REMARK 465 ILE B 35 REMARK 465 PRO B 36 REMARK 465 GLU B 37 REMARK 465 LEU B 38 REMARK 465 ARG B 39 REMARK 465 ILE B 40 REMARK 465 PRO B 41 REMARK 465 HIS B 42 REMARK 465 GLN B 43 REMARK 465 PRO B 44 REMARK 465 GLY B 45 REMARK 465 SER B 128 REMARK 465 VAL B 129 REMARK 465 SER B 130 REMARK 465 VAL B 131 REMARK 465 GLY B 132 REMARK 465 GLY B 150 REMARK 465 SER B 226 REMARK 465 SER B 227 REMARK 465 PRO B 228 REMARK 465 LEU B 229 REMARK 465 ARG B 230 REMARK 465 SER B 231 REMARK 465 VAL B 232 REMARK 465 ARG B 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 48 CG1 CG2 REMARK 470 ARG A 61 CD NE CZ NH1 NH2 REMARK 470 GLU A 64 CD OE1 OE2 REMARK 470 ARG A 77 CZ NH1 NH2 REMARK 470 ARG A 88 CZ NH1 NH2 REMARK 470 SER A 127 OG REMARK 470 VAL A 129 CG1 CG2 REMARK 470 SER A 130 OG REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 ASP A 173 OD1 OD2 REMARK 470 ASP B 46 CG OD1 OD2 REMARK 470 ARG B 61 CD NE CZ NH1 NH2 REMARK 470 GLU B 64 CD OE1 OE2 REMARK 470 GLN B 71 CD OE1 NE2 REMARK 470 ASP B 80 OD1 OD2 REMARK 470 SER B 127 OG REMARK 470 LEU B 148 CG CD1 CD2 REMARK 470 SER B 149 OG REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 203 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 177 O HIS B 201 2.05 REMARK 500 ND2 ASN A 62 OD1 ASN B 62 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 115 35.51 75.55 REMARK 500 ILE A 144 25.92 -141.08 REMARK 500 THR A 208 -91.65 -98.54 REMARK 500 ARG A 224 1.46 -63.60 REMARK 500 ARG B 224 5.82 -67.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 236 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 381648 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3E98 A 1 233 UNP Q51565 Q51565_PSEAE 1 233 DBREF 3E98 B 1 233 UNP Q51565 Q51565_PSEAE 1 233 SEQADV 3E98 MSE A -18 UNP Q51565 EXPRESSION TAG SEQADV 3E98 GLY A -17 UNP Q51565 EXPRESSION TAG SEQADV 3E98 SER A -16 UNP Q51565 EXPRESSION TAG SEQADV 3E98 ASP A -15 UNP Q51565 EXPRESSION TAG SEQADV 3E98 LYS A -14 UNP Q51565 EXPRESSION TAG SEQADV 3E98 ILE A -13 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS A -12 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS A -11 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS A -10 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS A -9 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS A -8 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS A -7 UNP Q51565 EXPRESSION TAG SEQADV 3E98 GLU A -6 UNP Q51565 EXPRESSION TAG SEQADV 3E98 ASN A -5 UNP Q51565 EXPRESSION TAG SEQADV 3E98 LEU A -4 UNP Q51565 EXPRESSION TAG SEQADV 3E98 TYR A -3 UNP Q51565 EXPRESSION TAG SEQADV 3E98 PHE A -2 UNP Q51565 EXPRESSION TAG SEQADV 3E98 GLN A -1 UNP Q51565 EXPRESSION TAG SEQADV 3E98 GLY A 0 UNP Q51565 EXPRESSION TAG SEQADV 3E98 MSE B -18 UNP Q51565 EXPRESSION TAG SEQADV 3E98 GLY B -17 UNP Q51565 EXPRESSION TAG SEQADV 3E98 SER B -16 UNP Q51565 EXPRESSION TAG SEQADV 3E98 ASP B -15 UNP Q51565 EXPRESSION TAG SEQADV 3E98 LYS B -14 UNP Q51565 EXPRESSION TAG SEQADV 3E98 ILE B -13 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS B -12 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS B -11 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS B -10 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS B -9 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS B -8 UNP Q51565 EXPRESSION TAG SEQADV 3E98 HIS B -7 UNP Q51565 EXPRESSION TAG SEQADV 3E98 GLU B -6 UNP Q51565 EXPRESSION TAG SEQADV 3E98 ASN B -5 UNP Q51565 EXPRESSION TAG SEQADV 3E98 LEU B -4 UNP Q51565 EXPRESSION TAG SEQADV 3E98 TYR B -3 UNP Q51565 EXPRESSION TAG SEQADV 3E98 PHE B -2 UNP Q51565 EXPRESSION TAG SEQADV 3E98 GLN B -1 UNP Q51565 EXPRESSION TAG SEQADV 3E98 GLY B 0 UNP Q51565 EXPRESSION TAG SEQRES 1 A 252 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 252 ASN LEU TYR PHE GLN GLY MSE THR GLU LYS SER GLN GLU SEQRES 3 A 252 PRO THR ALA ALA LEU ASP ALA GLU GLN VAL ALA ALA TYR SEQRES 4 A 252 LEU SER GLN HIS PRO GLU PHE PHE VAL GLU HIS ASP GLU SEQRES 5 A 252 LEU ILE PRO GLU LEU ARG ILE PRO HIS GLN PRO GLY ASP SEQRES 6 A 252 ALA VAL SER LEU VAL GLU ARG GLN VAL ARG LEU LEU ARG SEQRES 7 A 252 GLU ARG ASN ILE GLU MSE ARG HIS ARG LEU SER GLN LEU SEQRES 8 A 252 MSE ASP VAL ALA ARG GLU ASN ASP ARG LEU PHE ASP LYS SEQRES 9 A 252 THR ARG ARG LEU VAL LEU ASP LEU LEU ASP ALA THR SER SEQRES 10 A 252 LEU GLU ASP VAL VAL SER THR VAL GLU ASP SER LEU ARG SEQRES 11 A 252 HIS GLU PHE GLN VAL PRO TYR VAL SER LEU ILE LEU PHE SEQRES 12 A 252 SER ASP SER SER VAL SER VAL GLY ARG SER VAL SER SER SEQRES 13 A 252 ALA GLU ALA HIS GLN ALA ILE GLY GLY LEU LEU SER GLY SEQRES 14 A 252 GLY LYS THR VAL CYS GLY VAL LEU ARG PRO HIS GLU LEU SEQRES 15 A 252 ALA PHE LEU PHE GLY GLU SER ASP ARG ASP GLU ILE GLY SEQRES 16 A 252 SER ALA ALA VAL VAL SER LEU SER PHE GLN GLY LEU HIS SEQRES 17 A 252 GLY VAL LEU ALA ILE GLY SER PRO ASP PRO GLN HIS TYR SEQRES 18 A 252 LYS SER SER LEU GLY THR LEU PHE LEU GLY TYR VAL ALA SEQRES 19 A 252 GLU VAL LEU ALA ARG VAL LEU PRO ARG PHE SER SER PRO SEQRES 20 A 252 LEU ARG SER VAL ARG SEQRES 1 B 252 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 252 ASN LEU TYR PHE GLN GLY MSE THR GLU LYS SER GLN GLU SEQRES 3 B 252 PRO THR ALA ALA LEU ASP ALA GLU GLN VAL ALA ALA TYR SEQRES 4 B 252 LEU SER GLN HIS PRO GLU PHE PHE VAL GLU HIS ASP GLU SEQRES 5 B 252 LEU ILE PRO GLU LEU ARG ILE PRO HIS GLN PRO GLY ASP SEQRES 6 B 252 ALA VAL SER LEU VAL GLU ARG GLN VAL ARG LEU LEU ARG SEQRES 7 B 252 GLU ARG ASN ILE GLU MSE ARG HIS ARG LEU SER GLN LEU SEQRES 8 B 252 MSE ASP VAL ALA ARG GLU ASN ASP ARG LEU PHE ASP LYS SEQRES 9 B 252 THR ARG ARG LEU VAL LEU ASP LEU LEU ASP ALA THR SER SEQRES 10 B 252 LEU GLU ASP VAL VAL SER THR VAL GLU ASP SER LEU ARG SEQRES 11 B 252 HIS GLU PHE GLN VAL PRO TYR VAL SER LEU ILE LEU PHE SEQRES 12 B 252 SER ASP SER SER VAL SER VAL GLY ARG SER VAL SER SER SEQRES 13 B 252 ALA GLU ALA HIS GLN ALA ILE GLY GLY LEU LEU SER GLY SEQRES 14 B 252 GLY LYS THR VAL CYS GLY VAL LEU ARG PRO HIS GLU LEU SEQRES 15 B 252 ALA PHE LEU PHE GLY GLU SER ASP ARG ASP GLU ILE GLY SEQRES 16 B 252 SER ALA ALA VAL VAL SER LEU SER PHE GLN GLY LEU HIS SEQRES 17 B 252 GLY VAL LEU ALA ILE GLY SER PRO ASP PRO GLN HIS TYR SEQRES 18 B 252 LYS SER SER LEU GLY THR LEU PHE LEU GLY TYR VAL ALA SEQRES 19 B 252 GLU VAL LEU ALA ARG VAL LEU PRO ARG PHE SER SER PRO SEQRES 20 B 252 LEU ARG SER VAL ARG MODRES 3E98 MSE A 65 MET SELENOMETHIONINE MODRES 3E98 MSE A 73 MET SELENOMETHIONINE MODRES 3E98 MSE B 65 MET SELENOMETHIONINE MODRES 3E98 MSE B 73 MET SELENOMETHIONINE HET MSE A 65 13 HET MSE A 73 8 HET MSE B 65 8 HET MSE B 73 8 HET EDO A 234 4 HET EDO A 235 4 HET EDO A 236 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *75(H2 O) HELIX 1 1 VAL A 48 ALA A 96 1 49 HELIX 2 2 SER A 98 GLU A 113 1 16 HELIX 3 3 SER A 136 SER A 149 1 14 HELIX 4 4 ARG A 159 PHE A 167 1 9 HELIX 5 5 ASP A 171 ILE A 175 5 5 HELIX 6 6 GLN A 200 SER A 204 5 5 HELIX 7 7 THR A 208 LEU A 222 1 15 HELIX 8 8 PRO A 223 PHE A 225 5 3 HELIX 9 9 ASP B 46 ASP B 95 1 50 HELIX 10 10 SER B 98 GLU B 113 1 16 HELIX 11 11 SER B 136 GLY B 145 1 10 HELIX 12 12 ARG B 159 ASP B 173 1 15 HELIX 13 13 THR B 208 LEU B 222 1 15 HELIX 14 14 PRO B 223 PHE B 225 5 3 SHEET 1 A 4 ARG A 133 VAL A 135 0 SHEET 2 A 4 TYR A 118 PHE A 124 1 N LEU A 123 O ARG A 133 SHEET 3 A 4 LEU A 188 SER A 196 -1 O VAL A 191 N ILE A 122 SHEET 4 A 4 SER A 177 SER A 184 -1 N LEU A 183 O HIS A 189 SHEET 1 B 5 SER B 134 VAL B 135 0 SHEET 2 B 5 TYR B 118 PHE B 124 1 N LEU B 123 O VAL B 135 SHEET 3 B 5 LEU B 188 SER B 196 -1 O ALA B 193 N SER B 120 SHEET 4 B 5 SER B 177 SER B 184 -1 N LEU B 183 O HIS B 189 SHEET 5 B 5 VAL B 154 GLY B 156 -1 N VAL B 154 O VAL B 180 LINK C GLU A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N ARG A 66 1555 1555 1.33 LINK C LEU A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N ASP A 74 1555 1555 1.34 LINK C GLU B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N ARG B 66 1555 1555 1.33 LINK C LEU B 72 N MSE B 73 1555 1555 1.32 LINK C MSE B 73 N ASP B 74 1555 1555 1.33 SITE 1 AC1 5 SER A 182 LEU A 183 SER A 184 GLU A 216 SITE 2 AC1 5 ALA A 219 SITE 1 AC2 4 ARG A 87 TYR A 213 TYR B 213 GLU B 216 SITE 1 AC3 2 THR A 153 ALA A 178 CRYST1 53.841 88.114 60.963 90.00 107.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018573 0.000000 0.006006 0.00000 SCALE2 0.000000 0.011349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017240 0.00000