HEADER OXIDOREDUCTASE 22-AUG-08 3E9J TITLE STRUCTURE OF THE CHARGE-TRANSFER INTERMEDIATE OF THE TRANSMEMBRANE TITLE 2 REDOX CATALYST DSBB COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL/DISULFIDE OXIDOREDUCTASE DSBA; COMPND 3 CHAIN: B, E; COMPND 4 SYNONYM: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 5 EC: 1.8.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: THIOL/DISULFIDE OXIDOREDUCTASE DSBB; COMPND 10 CHAIN: C, F; COMPND 11 SYNONYM: DISULFIDE BOND FORMATION PROTEIN B; COMPND 12 EC: 1.8.5.-; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: BL21(DE3); SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDSBA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 13 ORGANISM_TAXID: 83333; SOURCE 14 STRAIN: HM125; SOURCE 15 GENE: DSBB, ROXB, YCGA, B1185, JW5182; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: HM125; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PDSBB KEYWDS MEMBRANE PROTEIN COMPLEX, MECHANISM OF DISULFIDE BOND FORMATION, KEYWDS 2 OXIDATIVE PROTEIN FOLDING IN ESCHERICHIA COLI PERIPLASM, X-RAY KEYWDS 3 CRYSTAL STRUCTURE, CHARGE TRANSFER REACTION INTERMEDIATE, FOUR HELIX KEYWDS 4 BUNDLE, PERIPLASM, REDOX-ACTIVE CENTER, CELL INNER MEMBRANE, CELL KEYWDS 5 MEMBRANE, CHAPERONE, ELECTRON TRANSPORT, MEMBRANE, OXIDOREDUCTASE, KEYWDS 6 TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.MALOJCIC,R.L.OWEN,R.GLOCKSHUBER REVDAT 5 30-OCT-24 3E9J 1 REMARK REVDAT 4 30-AUG-23 3E9J 1 REMARK REVDAT 3 20-OCT-21 3E9J 1 REMARK SEQADV REVDAT 2 24-FEB-09 3E9J 1 VERSN REVDAT 1 25-NOV-08 3E9J 0 JRNL AUTH G.MALOJCIC,R.L.OWEN,J.P.GRIMSHAW,R.GLOCKSHUBER JRNL TITL PREPARATION AND STRUCTURE OF THE CHARGE-TRANSFER JRNL TITL 2 INTERMEDIATE OF THE TRANSMEMBRANE REDOX CATALYST DSBB. JRNL REF FEBS LETT. V. 582 3301 2008 JRNL REFN ISSN 0014-5793 JRNL PMID 18775700 JRNL DOI 10.1016/J.FEBSLET.2008.07.063 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 125.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 17000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.339 REMARK 3 R VALUE (WORKING SET) : 0.337 REMARK 3 FREE R VALUE : 0.379 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1251 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.5070 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.5970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 160.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -23.32000 REMARK 3 B22 (A**2) : 20.62000 REMARK 3 B33 (A**2) : 2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.790 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.953 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 67.620 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.893 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5286 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3466 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7190 ; 1.418 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8484 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 638 ; 8.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;38.477 ;24.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 864 ;22.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.467 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 806 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5774 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1076 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1673 ; 0.268 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3940 ; 0.219 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2511 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2669 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 186 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 8 ; 0.111 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.388 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 3 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 188 1 REMARK 3 1 E 1 E 188 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 2479 ; 0.03 ; 0.05 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 14 C 501 1 REMARK 3 1 F 14 F 501 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 C (A): 1828 ; 0.02 ; 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18142 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 125.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HI7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG550 MME, 50 MM TRIS PH 8.9, 1.0 REMARK 280 M AMMONIUM FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.55250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 189 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 ARG C 3 REMARK 465 PHE C 4 REMARK 465 LEU C 5 REMARK 465 ASN C 6 REMARK 465 GLN C 7 REMARK 465 ALA C 8 REMARK 465 SER C 9 REMARK 465 GLN C 10 REMARK 465 GLY C 11 REMARK 465 ARG C 12 REMARK 465 GLY C 13 REMARK 465 SER C 127 REMARK 465 GLY C 128 REMARK 465 ASP C 129 REMARK 465 CYS C 130 REMARK 465 ALA C 131 REMARK 465 GLU C 132 REMARK 465 ARG C 133 REMARK 465 GLN C 134 REMARK 465 TRP C 135 REMARK 465 ASP C 136 REMARK 465 PHE C 137 REMARK 465 LEU C 138 REMARK 465 GLY C 139 REMARK 465 LEU C 140 REMARK 465 GLU C 141 REMARK 465 SER C 163 REMARK 465 GLN C 164 REMARK 465 PRO C 165 REMARK 465 PHE C 166 REMARK 465 LYS C 167 REMARK 465 ALA C 168 REMARK 465 LYS C 169 REMARK 465 LYS C 170 REMARK 465 ARG C 171 REMARK 465 ASP C 172 REMARK 465 LEU C 173 REMARK 465 PHE C 174 REMARK 465 GLY C 175 REMARK 465 ARG C 176 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 465 HIS C 179 REMARK 465 HIS C 180 REMARK 465 HIS C 181 REMARK 465 HIS C 182 REMARK 465 LYS E 189 REMARK 465 MET F 1 REMARK 465 LEU F 2 REMARK 465 ARG F 3 REMARK 465 PHE F 4 REMARK 465 LEU F 5 REMARK 465 ASN F 6 REMARK 465 GLN F 7 REMARK 465 ALA F 8 REMARK 465 SER F 9 REMARK 465 GLN F 10 REMARK 465 GLY F 11 REMARK 465 ARG F 12 REMARK 465 GLY F 13 REMARK 465 SER F 127 REMARK 465 GLY F 128 REMARK 465 ASP F 129 REMARK 465 CYS F 130 REMARK 465 ALA F 131 REMARK 465 GLU F 132 REMARK 465 ARG F 133 REMARK 465 GLN F 134 REMARK 465 TRP F 135 REMARK 465 ASP F 136 REMARK 465 PHE F 137 REMARK 465 LEU F 138 REMARK 465 GLY F 139 REMARK 465 LEU F 140 REMARK 465 GLU F 141 REMARK 465 SER F 163 REMARK 465 GLN F 164 REMARK 465 PRO F 165 REMARK 465 PHE F 166 REMARK 465 LYS F 167 REMARK 465 ALA F 168 REMARK 465 LYS F 169 REMARK 465 LYS F 170 REMARK 465 ARG F 171 REMARK 465 ASP F 172 REMARK 465 LEU F 173 REMARK 465 PHE F 174 REMARK 465 GLY F 175 REMARK 465 ARG F 176 REMARK 465 HIS F 177 REMARK 465 HIS F 178 REMARK 465 HIS F 179 REMARK 465 HIS F 180 REMARK 465 HIS F 181 REMARK 465 HIS F 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS B 41 NE2 HIS E 41 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 84 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 VAL E 84 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 2 29.21 -149.72 REMARK 500 ASP B 5 157.69 -48.92 REMARK 500 LYS B 7 -84.56 -103.03 REMARK 500 PRO B 20 -177.40 -62.74 REMARK 500 VAL B 22 117.24 -172.97 REMARK 500 GLU B 24 84.26 -161.85 REMARK 500 PHE B 26 160.16 178.23 REMARK 500 PHE B 29 -37.40 -160.91 REMARK 500 PRO B 51 -162.05 -62.57 REMARK 500 LYS B 55 95.98 -43.62 REMARK 500 LYS B 70 -83.12 -57.31 REMARK 500 ASP B 71 -57.70 -15.45 REMARK 500 ALA B 77 -73.34 -28.40 REMARK 500 VAL B 78 -65.94 -29.69 REMARK 500 LEU B 82 -70.71 -60.08 REMARK 500 VAL B 84 -27.03 12.93 REMARK 500 ARG B 103 -48.01 -143.01 REMARK 500 SER B 128 157.24 -41.37 REMARK 500 ALA B 136 -74.31 -49.02 REMARK 500 GLN B 137 -36.14 -22.34 REMARK 500 GLN B 146 59.06 30.75 REMARK 500 PRO B 151 -167.17 -45.10 REMARK 500 ALA B 152 129.99 162.76 REMARK 500 ASN B 156 20.68 44.77 REMARK 500 LYS B 158 -24.41 -156.82 REMARK 500 GLN B 160 -177.86 -55.13 REMARK 500 THR B 168 45.66 -143.63 REMARK 500 SER B 169 -33.16 -133.91 REMARK 500 VAL B 175 -71.04 -56.86 REMARK 500 TRP C 15 -70.33 -13.72 REMARK 500 ALA C 29 -70.66 -64.76 REMARK 500 TRP C 31 -58.11 -22.79 REMARK 500 MET C 36 33.26 -79.75 REMARK 500 LEU C 37 -105.79 55.84 REMARK 500 LEU C 38 76.27 -162.29 REMARK 500 LEU C 51 -77.51 -88.73 REMARK 500 PHE C 52 1.48 -69.26 REMARK 500 ALA C 58 -41.38 -131.23 REMARK 500 ILE C 60 33.37 -93.02 REMARK 500 ALA C 62 -32.02 -143.91 REMARK 500 ALA C 64 178.76 56.48 REMARK 500 SER C 80 -118.61 -119.75 REMARK 500 ALA C 81 1.44 -63.55 REMARK 500 VAL C 85 -73.25 -67.81 REMARK 500 HIS C 91 -56.46 -23.22 REMARK 500 ALA C 102 -157.23 -91.68 REMARK 500 CYS C 104 120.30 -170.63 REMARK 500 PHE C 106 57.99 -158.22 REMARK 500 VAL C 108 167.33 -40.58 REMARK 500 ARG C 109 146.50 172.56 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL C 108 ARG C 109 146.38 REMARK 500 VAL E 61 ASN E 62 -149.17 REMARK 500 VAL F 108 ARG F 109 146.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ1 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ1 F 501 DBREF 3E9J B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 3E9J C 1 176 UNP P0A6M2 DSBB_ECOLI 1 176 DBREF 3E9J E 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 3E9J F 1 176 UNP P0A6M2 DSBB_ECOLI 1 176 SEQADV 3E9J ALA B 33 UNP P0AEG4 CYS 52 ENGINEERED MUTATION SEQADV 3E9J ALA C 8 UNP P0A6M2 CYS 8 ENGINEERED MUTATION SEQADV 3E9J VAL C 49 UNP P0A6M2 CYS 49 ENGINEERED MUTATION SEQADV 3E9J HIS C 177 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS C 178 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS C 179 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS C 180 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS C 181 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS C 182 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J ALA E 33 UNP P0AEG4 CYS 52 ENGINEERED MUTATION SEQADV 3E9J ALA F 8 UNP P0A6M2 CYS 8 ENGINEERED MUTATION SEQADV 3E9J VAL F 49 UNP P0A6M2 CYS 49 ENGINEERED MUTATION SEQADV 3E9J HIS F 177 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS F 178 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS F 179 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS F 180 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS F 181 UNP P0A6M2 EXPRESSION TAG SEQADV 3E9J HIS F 182 UNP P0A6M2 EXPRESSION TAG SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS ALA TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 C 182 MET LEU ARG PHE LEU ASN GLN ALA SER GLN GLY ARG GLY SEQRES 2 C 182 ALA TRP LEU LEU MET ALA PHE THR ALA LEU ALA LEU GLU SEQRES 3 C 182 LEU THR ALA LEU TRP PHE GLN HIS VAL MET LEU LEU LYS SEQRES 4 C 182 PRO CYS VAL LEU CYS ILE TYR GLU ARG VAL ALA LEU PHE SEQRES 5 C 182 GLY VAL LEU GLY ALA ALA LEU ILE GLY ALA ILE ALA PRO SEQRES 6 C 182 LYS THR PRO LEU ARG TYR VAL ALA MET VAL ILE TRP LEU SEQRES 7 C 182 TYR SER ALA PHE ARG GLY VAL GLN LEU THR TYR GLU HIS SEQRES 8 C 182 THR MET LEU GLN LEU TYR PRO SER PRO PHE ALA THR CYS SEQRES 9 C 182 ASP PHE MET VAL ARG PHE PRO GLU TRP LEU PRO LEU ASP SEQRES 10 C 182 LYS TRP VAL PRO GLN VAL PHE VAL ALA SER GLY ASP CYS SEQRES 11 C 182 ALA GLU ARG GLN TRP ASP PHE LEU GLY LEU GLU MET PRO SEQRES 12 C 182 GLN TRP LEU LEU GLY ILE PHE ILE ALA TYR LEU ILE VAL SEQRES 13 C 182 ALA VAL LEU VAL VAL ILE SER GLN PRO PHE LYS ALA LYS SEQRES 14 C 182 LYS ARG ASP LEU PHE GLY ARG HIS HIS HIS HIS HIS HIS SEQRES 1 E 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 E 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 E 189 SER PHE PHE CYS PRO HIS ALA TYR GLN PHE GLU GLU VAL SEQRES 4 E 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 E 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 E 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 E 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 E 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 E 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 E 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 E 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 E 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 E 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 E 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 E 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 F 182 MET LEU ARG PHE LEU ASN GLN ALA SER GLN GLY ARG GLY SEQRES 2 F 182 ALA TRP LEU LEU MET ALA PHE THR ALA LEU ALA LEU GLU SEQRES 3 F 182 LEU THR ALA LEU TRP PHE GLN HIS VAL MET LEU LEU LYS SEQRES 4 F 182 PRO CYS VAL LEU CYS ILE TYR GLU ARG VAL ALA LEU PHE SEQRES 5 F 182 GLY VAL LEU GLY ALA ALA LEU ILE GLY ALA ILE ALA PRO SEQRES 6 F 182 LYS THR PRO LEU ARG TYR VAL ALA MET VAL ILE TRP LEU SEQRES 7 F 182 TYR SER ALA PHE ARG GLY VAL GLN LEU THR TYR GLU HIS SEQRES 8 F 182 THR MET LEU GLN LEU TYR PRO SER PRO PHE ALA THR CYS SEQRES 9 F 182 ASP PHE MET VAL ARG PHE PRO GLU TRP LEU PRO LEU ASP SEQRES 10 F 182 LYS TRP VAL PRO GLN VAL PHE VAL ALA SER GLY ASP CYS SEQRES 11 F 182 ALA GLU ARG GLN TRP ASP PHE LEU GLY LEU GLU MET PRO SEQRES 12 F 182 GLN TRP LEU LEU GLY ILE PHE ILE ALA TYR LEU ILE VAL SEQRES 13 F 182 ALA VAL LEU VAL VAL ILE SER GLN PRO PHE LYS ALA LYS SEQRES 14 F 182 LYS ARG ASP LEU PHE GLY ARG HIS HIS HIS HIS HIS HIS HET UQ1 C 501 18 HET UQ1 F 501 18 HETNAM UQ1 UBIQUINONE-1 FORMUL 5 UQ1 2(C14 H18 O4) HELIX 1 1 CYS B 30 VAL B 39 1 10 HELIX 2 2 HIS B 41 LEU B 50 1 10 HELIX 3 3 GLY B 66 LEU B 82 1 17 HELIX 4 4 VAL B 84 GLN B 97 1 14 HELIX 5 5 SER B 104 ALA B 115 1 12 HELIX 6 6 LYS B 118 ASN B 127 1 10 HELIX 7 7 SER B 128 ALA B 143 1 16 HELIX 8 8 ASN B 170 GLU B 187 1 18 HELIX 9 9 ALA C 14 HIS C 34 1 21 HELIX 10 10 VAL C 42 ALA C 50 1 9 HELIX 11 11 VAL C 72 TRP C 77 1 6 HELIX 12 12 SER C 80 TYR C 97 1 18 HELIX 13 13 LEU C 114 TRP C 119 5 6 HELIX 14 14 MET C 142 VAL C 160 1 19 HELIX 15 15 CYS E 30 VAL E 39 1 10 HELIX 16 16 HIS E 41 LEU E 50 1 10 HELIX 17 17 GLY E 66 LEU E 82 1 17 HELIX 18 18 VAL E 84 GLN E 97 1 14 HELIX 19 19 SER E 104 ALA E 115 1 12 HELIX 20 20 LYS E 118 ASN E 127 1 10 HELIX 21 21 SER E 128 ALA E 143 1 16 HELIX 22 22 ASN E 170 GLU E 187 1 18 HELIX 23 23 ALA F 14 HIS F 34 1 21 HELIX 24 24 VAL F 42 PHE F 52 1 11 HELIX 25 25 VAL F 72 TRP F 77 1 6 HELIX 26 26 SER F 80 TYR F 97 1 18 HELIX 27 27 LEU F 114 TRP F 119 5 6 HELIX 28 28 MET F 142 VAL F 160 1 19 SHEET 1 A 3 VAL B 22 LEU B 23 0 SHEET 2 A 3 PHE B 154 VAL B 155 -1 O PHE B 154 N LEU B 23 SHEET 3 A 3 TYR B 159 GLN B 160 -1 O TYR B 159 N VAL B 155 SHEET 1 B 3 VAL E 22 LEU E 23 0 SHEET 2 B 3 PHE E 154 VAL E 155 -1 O PHE E 154 N LEU E 23 SHEET 3 B 3 TYR E 159 GLN E 160 -1 O TYR E 159 N VAL E 155 SSBOND 1 CYS B 30 CYS C 104 1555 1555 2.05 SSBOND 2 CYS E 30 CYS F 104 1555 1555 2.04 CISPEP 1 VAL B 150 PRO B 151 0 -12.71 CISPEP 2 VAL E 150 PRO E 151 0 -17.15 SITE 1 AC1 8 LYS C 39 CYS C 41 CYS C 44 GLU C 47 SITE 2 AC1 8 ARG C 48 HIS C 91 MET C 142 LEU C 146 SITE 1 AC2 9 LYS F 39 PRO F 40 CYS F 41 CYS F 44 SITE 2 AC2 9 GLU F 47 ARG F 48 HIS F 91 MET F 142 SITE 3 AC2 9 LEU F 146 CRYST1 66.305 103.105 125.826 90.00 91.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015082 0.000000 0.000305 0.00000 SCALE2 0.000000 0.009699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007949 0.00000