HEADER TRANSFERASE 24-AUG-08 3E9Z TITLE CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM SCHISTOSOMA TITLE 2 MANSONI IN COMPLEX WITH 6-CHLOROGUANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE-NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.4.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: SMPNP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-C2G KEYWDS SCHISTOSOMA PURINE NUCLEOSIDE PHOSPHORYLASE, GLYCOSYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.M.PEREIRA,M.M.REZENDE,G.OLIVA,R.C.GARRATT REVDAT 2 30-AUG-23 3E9Z 1 REMARK REVDAT 1 01-SEP-09 3E9Z 0 JRNL AUTH H.M.PEREIRA,M.M.REZENDE,G.OLIVA,R.C.GARRATT JRNL TITL CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI PURINE NUCLEOSIDE JRNL TITL 2 PHOSPHORYLASE (SMPNP) IN COMPLEX WITH ADENINE, JRNL TITL 3 8-AMINOGUANINE, 8-AZAGUANINE AND 6-CHLOROGUANINE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 29343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.6460 - 5.1370 0.97 2896 135 0.1960 0.2500 REMARK 3 2 5.1370 - 4.0770 0.98 2754 174 0.1400 0.1920 REMARK 3 3 4.0770 - 3.5620 0.98 2736 134 0.1370 0.2300 REMARK 3 4 3.5620 - 3.2370 0.96 2700 143 0.1510 0.2170 REMARK 3 5 3.2370 - 3.0050 0.96 2647 139 0.1650 0.2370 REMARK 3 6 3.0050 - 2.8270 0.92 2512 164 0.1760 0.3090 REMARK 3 7 2.8270 - 2.6860 0.89 2465 128 0.1790 0.2610 REMARK 3 8 2.6860 - 2.5690 0.89 2449 121 0.1840 0.2500 REMARK 3 9 2.5690 - 2.4700 0.86 2348 123 0.1880 0.2970 REMARK 3 10 2.4700 - 2.3850 0.82 2245 121 0.2070 0.2930 REMARK 3 11 2.3850 - 2.3100 0.77 2111 98 0.2200 0.2940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 57.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.62800 REMARK 3 B22 (A**2) : -2.65300 REMARK 3 B33 (A**2) : 0.02500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6484 REMARK 3 ANGLE : 1.267 8779 REMARK 3 CHIRALITY : 0.093 1026 REMARK 3 PLANARITY : 0.006 1122 REMARK 3 DIHEDRAL : 16.649 2354 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain A and (resseq 5:34 or resseq 38:61 REMARK 3 or resseq 67:252 or resseq 269:287 ) REMARK 3 SELECTION : chain B and (resseq 5:34 or resseq 38:61 REMARK 3 or resseq 67:252 or resseq 269:287 ) REMARK 3 ATOM PAIRS NUMBER : 1978 REMARK 3 RMSD : 0.071 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: chain A and (resseq 5:34 or resseq 38:61 REMARK 3 or resseq 67:252 or resseq 269:287 ) REMARK 3 SELECTION : chain C and (resseq 5:34 or resseq 38:61 REMARK 3 or resseq 67:252 or resseq 269:287 ) REMARK 3 ATOM PAIRS NUMBER : 1970 REMARK 3 RMSD : 0.061 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9-5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.43000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30649 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 129.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : 0.41800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1TD1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 1500, 20% GLYCEROL, 32MM REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.41050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.52750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.06050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.52750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.41050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.06050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 VAL A 63 REMARK 465 VAL A 64 REMARK 465 GLY A 65 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 GLU B 3 REMARK 465 SER B 35 REMARK 465 GLY B 36 REMARK 465 LEU B 37 REMARK 465 SER B 62 REMARK 465 VAL B 63 REMARK 465 VAL B 64 REMARK 465 GLY B 65 REMARK 465 HIS B 66 REMARK 465 SER B 253 REMARK 465 ASP B 254 REMARK 465 LEU B 255 REMARK 465 LYS B 256 REMARK 465 PRO B 257 REMARK 465 ASN B 258 REMARK 465 MET C 1 REMARK 465 HIS C 2 REMARK 465 GLU C 3 REMARK 465 ASP C 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 61 OG1 CG2 REMARK 470 HIS A 66 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 4 OG REMARK 470 SER B 67 OG REMARK 470 HIS B 259 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 262 CG1 CG2 REMARK 470 THR B 265 OG1 CG2 REMARK 470 SER C 4 OG REMARK 470 ASP C 254 CG OD1 OD2 REMARK 470 LEU C 255 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 835 O HOH A 838 2.10 REMARK 500 O HOH C 740 O HOH C 969 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 182 NZ LYS B 286 2455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 251 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 269 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 269 CD - NE - CZ ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG B 269 NE - CZ - NH1 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG B 269 NE - CZ - NH2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG C 269 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 269 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 61 -87.28 -125.94 REMARK 500 SER A 67 124.85 30.57 REMARK 500 LEU A 145 13.42 84.28 REMARK 500 THR A 223 -57.00 76.18 REMARK 500 SER A 253 115.82 175.16 REMARK 500 TYR B 139 79.66 -100.44 REMARK 500 LEU B 145 11.59 84.20 REMARK 500 PHE B 161 77.90 -117.99 REMARK 500 THR B 223 -54.82 77.96 REMARK 500 THR B 265 73.16 -113.59 REMARK 500 ALA B 267 34.83 -81.37 REMARK 500 SER C 67 133.85 -37.49 REMARK 500 LEU C 145 13.73 84.30 REMARK 500 ASP C 169 117.23 -39.38 REMARK 500 THR C 223 -56.41 77.68 REMARK 500 SER C 253 136.47 -179.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6GU A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS C 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6GU C 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 291 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TCV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM REMARK 900 SCHISTOSOMA MANSONI IN COMPLEX WITH NON-DETERGENT SULFOBETAINE 195 REMARK 900 AND ACETATE REMARK 900 RELATED ID: 1TD1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM REMARK 900 SCHISTOSOMA MANSONI IN COMPLEX WITH ACETATE REMARK 900 RELATED ID: 1TCU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM REMARK 900 SCHISTOSOMA MANSONI IN COMPLEX WITH PHOSPHATE AND ACETATE REMARK 900 RELATED ID: 3E9R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE FROM REMARK 900 SCHISTOSOMA MANSONI IN COMPLEX WITH ADENINE DBREF 3E9Z A 1 287 UNP Q9BMI9 Q9BMI9_SCHMA 1 287 DBREF 3E9Z B 1 287 UNP Q9BMI9 Q9BMI9_SCHMA 1 287 DBREF 3E9Z C 1 287 UNP Q9BMI9 Q9BMI9_SCHMA 1 287 SEQRES 1 A 287 MET HIS GLU SER VAL THR ALA ASN ILE GLU ASN VAL LYS SEQRES 2 A 287 LYS VAL ALA HIS HIS ILE GLN LYS LEU THR SER ILE VAL SEQRES 3 A 287 PRO GLU ILE GLY ILE ILE CYS GLY SER GLY LEU GLY LYS SEQRES 4 A 287 LEU ALA ASP GLY VAL LYS ASP LYS ILE THR ILE PRO TYR SEQRES 5 A 287 THR LYS ILE PRO ASN PHE PRO GLN THR SER VAL VAL GLY SEQRES 6 A 287 HIS SER GLY ASN LEU ILE PHE GLY THR LEU SER GLY ARG SEQRES 7 A 287 LYS VAL VAL VAL MET GLN GLY ARG PHE HIS MET TYR GLU SEQRES 8 A 287 GLY TYR SER ASN ASP THR VAL ALA LEU PRO ILE ARG VAL SEQRES 9 A 287 MET LYS LEU LEU GLY VAL LYS ILE LEU MET VAL SER ASN SEQRES 10 A 287 ALA ALA GLY GLY LEU ASN ARG SER LEU LYS LEU GLY ASP SEQRES 11 A 287 PHE VAL ILE LEU LYS ASP HIS ILE TYR LEU PRO GLY LEU SEQRES 12 A 287 GLY LEU ASN ASN ILE LEU VAL GLY PRO ASN GLN GLU ALA SEQRES 13 A 287 PHE GLY THR ARG PHE PRO ALA LEU SER ASN ALA TYR ASP SEQRES 14 A 287 ARG ASP LEU ARG LYS LEU ALA VAL GLN VAL ALA GLU GLU SEQRES 15 A 287 ASN GLY PHE GLY ASN LEU VAL HIS GLN GLY VAL TYR VAL SEQRES 16 A 287 MET ASN GLY GLY PRO CYS TYR GLU THR PRO ALA GLU CYS SEQRES 17 A 287 THR MET LEU LEU ASN MET GLY CYS ASP VAL VAL GLY MET SEQRES 18 A 287 SER THR ILE PRO GLU VAL VAL ILE ALA ARG HIS CYS GLY SEQRES 19 A 287 ILE GLN VAL PHE ALA VAL SER LEU VAL THR ASN ILE SER SEQRES 20 A 287 VAL LEU ASP VAL GLU SER ASP LEU LYS PRO ASN HIS GLU SEQRES 21 A 287 GLU VAL LEU ALA THR GLY ALA GLN ARG ALA GLU LEU MET SEQRES 22 A 287 GLN SER TRP PHE GLU LYS ILE ILE GLU LYS LEU PRO LYS SEQRES 23 A 287 ASP SEQRES 1 B 287 MET HIS GLU SER VAL THR ALA ASN ILE GLU ASN VAL LYS SEQRES 2 B 287 LYS VAL ALA HIS HIS ILE GLN LYS LEU THR SER ILE VAL SEQRES 3 B 287 PRO GLU ILE GLY ILE ILE CYS GLY SER GLY LEU GLY LYS SEQRES 4 B 287 LEU ALA ASP GLY VAL LYS ASP LYS ILE THR ILE PRO TYR SEQRES 5 B 287 THR LYS ILE PRO ASN PHE PRO GLN THR SER VAL VAL GLY SEQRES 6 B 287 HIS SER GLY ASN LEU ILE PHE GLY THR LEU SER GLY ARG SEQRES 7 B 287 LYS VAL VAL VAL MET GLN GLY ARG PHE HIS MET TYR GLU SEQRES 8 B 287 GLY TYR SER ASN ASP THR VAL ALA LEU PRO ILE ARG VAL SEQRES 9 B 287 MET LYS LEU LEU GLY VAL LYS ILE LEU MET VAL SER ASN SEQRES 10 B 287 ALA ALA GLY GLY LEU ASN ARG SER LEU LYS LEU GLY ASP SEQRES 11 B 287 PHE VAL ILE LEU LYS ASP HIS ILE TYR LEU PRO GLY LEU SEQRES 12 B 287 GLY LEU ASN ASN ILE LEU VAL GLY PRO ASN GLN GLU ALA SEQRES 13 B 287 PHE GLY THR ARG PHE PRO ALA LEU SER ASN ALA TYR ASP SEQRES 14 B 287 ARG ASP LEU ARG LYS LEU ALA VAL GLN VAL ALA GLU GLU SEQRES 15 B 287 ASN GLY PHE GLY ASN LEU VAL HIS GLN GLY VAL TYR VAL SEQRES 16 B 287 MET ASN GLY GLY PRO CYS TYR GLU THR PRO ALA GLU CYS SEQRES 17 B 287 THR MET LEU LEU ASN MET GLY CYS ASP VAL VAL GLY MET SEQRES 18 B 287 SER THR ILE PRO GLU VAL VAL ILE ALA ARG HIS CYS GLY SEQRES 19 B 287 ILE GLN VAL PHE ALA VAL SER LEU VAL THR ASN ILE SER SEQRES 20 B 287 VAL LEU ASP VAL GLU SER ASP LEU LYS PRO ASN HIS GLU SEQRES 21 B 287 GLU VAL LEU ALA THR GLY ALA GLN ARG ALA GLU LEU MET SEQRES 22 B 287 GLN SER TRP PHE GLU LYS ILE ILE GLU LYS LEU PRO LYS SEQRES 23 B 287 ASP SEQRES 1 C 287 MET HIS GLU SER VAL THR ALA ASN ILE GLU ASN VAL LYS SEQRES 2 C 287 LYS VAL ALA HIS HIS ILE GLN LYS LEU THR SER ILE VAL SEQRES 3 C 287 PRO GLU ILE GLY ILE ILE CYS GLY SER GLY LEU GLY LYS SEQRES 4 C 287 LEU ALA ASP GLY VAL LYS ASP LYS ILE THR ILE PRO TYR SEQRES 5 C 287 THR LYS ILE PRO ASN PHE PRO GLN THR SER VAL VAL GLY SEQRES 6 C 287 HIS SER GLY ASN LEU ILE PHE GLY THR LEU SER GLY ARG SEQRES 7 C 287 LYS VAL VAL VAL MET GLN GLY ARG PHE HIS MET TYR GLU SEQRES 8 C 287 GLY TYR SER ASN ASP THR VAL ALA LEU PRO ILE ARG VAL SEQRES 9 C 287 MET LYS LEU LEU GLY VAL LYS ILE LEU MET VAL SER ASN SEQRES 10 C 287 ALA ALA GLY GLY LEU ASN ARG SER LEU LYS LEU GLY ASP SEQRES 11 C 287 PHE VAL ILE LEU LYS ASP HIS ILE TYR LEU PRO GLY LEU SEQRES 12 C 287 GLY LEU ASN ASN ILE LEU VAL GLY PRO ASN GLN GLU ALA SEQRES 13 C 287 PHE GLY THR ARG PHE PRO ALA LEU SER ASN ALA TYR ASP SEQRES 14 C 287 ARG ASP LEU ARG LYS LEU ALA VAL GLN VAL ALA GLU GLU SEQRES 15 C 287 ASN GLY PHE GLY ASN LEU VAL HIS GLN GLY VAL TYR VAL SEQRES 16 C 287 MET ASN GLY GLY PRO CYS TYR GLU THR PRO ALA GLU CYS SEQRES 17 C 287 THR MET LEU LEU ASN MET GLY CYS ASP VAL VAL GLY MET SEQRES 18 C 287 SER THR ILE PRO GLU VAL VAL ILE ALA ARG HIS CYS GLY SEQRES 19 C 287 ILE GLN VAL PHE ALA VAL SER LEU VAL THR ASN ILE SER SEQRES 20 C 287 VAL LEU ASP VAL GLU SER ASP LEU LYS PRO ASN HIS GLU SEQRES 21 C 287 GLU VAL LEU ALA THR GLY ALA GLN ARG ALA GLU LEU MET SEQRES 22 C 287 GLN SER TRP PHE GLU LYS ILE ILE GLU LYS LEU PRO LYS SEQRES 23 C 287 ASP HET DMS A 703 4 HET SO4 A 291 5 HET 6GU A 704 11 HET DMS A 705 4 HET DMS B 703 4 HET ACT B 700 4 HET SO4 B 291 5 HET DMS C 703 4 HET 6GU C 704 11 HET SO4 C 291 5 HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION HETNAM 6GU 6-CHLOROGUANINE HETNAM ACT ACETATE ION HETSYN 6GU 6-CHLORO-9H-PURIN-2-AMINE FORMUL 4 DMS 4(C2 H6 O S) FORMUL 5 SO4 3(O4 S 2-) FORMUL 6 6GU 2(C5 H4 CL N5) FORMUL 9 ACT C2 H3 O2 1- FORMUL 14 HOH *680(H2 O) HELIX 1 1 ASN A 8 LYS A 21 1 14 HELIX 2 2 LYS A 39 VAL A 44 1 6 HELIX 3 3 THR A 53 ILE A 55 5 3 HELIX 4 4 HIS A 88 GLY A 92 5 5 HELIX 5 5 SER A 94 GLY A 109 1 16 HELIX 6 6 LEU A 140 GLY A 144 1 5 HELIX 7 7 ASP A 169 ASN A 183 1 15 HELIX 8 8 PHE A 185 ASN A 187 5 3 HELIX 9 9 THR A 204 MET A 214 1 11 HELIX 10 10 THR A 223 CYS A 233 1 11 HELIX 11 11 ASN A 258 ARG A 269 1 12 HELIX 12 12 ARG A 269 LEU A 284 1 16 HELIX 13 13 ASN B 8 LYS B 21 1 14 HELIX 14 14 LYS B 39 VAL B 44 1 6 HELIX 15 15 THR B 53 ILE B 55 5 3 HELIX 16 16 HIS B 88 GLY B 92 5 5 HELIX 17 17 SER B 94 GLY B 109 1 16 HELIX 18 18 LEU B 140 GLY B 144 1 5 HELIX 19 19 ASP B 169 ASN B 183 1 15 HELIX 20 20 PHE B 185 ASN B 187 5 3 HELIX 21 21 THR B 204 MET B 214 1 11 HELIX 22 22 THR B 223 CYS B 233 1 11 HELIX 23 23 ALA B 267 LEU B 284 1 18 HELIX 24 24 ASN C 8 THR C 23 1 16 HELIX 25 25 LYS C 39 VAL C 44 1 6 HELIX 26 26 THR C 53 ILE C 55 5 3 HELIX 27 27 HIS C 88 GLY C 92 5 5 HELIX 28 28 SER C 94 GLY C 109 1 16 HELIX 29 29 LEU C 140 GLY C 144 1 5 HELIX 30 30 ASP C 169 ASN C 183 1 15 HELIX 31 31 PHE C 185 ASN C 187 5 3 HELIX 32 32 THR C 204 MET C 214 1 11 HELIX 33 33 THR C 223 CYS C 233 1 11 HELIX 34 34 ASN C 258 LEU C 284 1 27 SHEET 1 A10 LYS A 45 PRO A 51 0 SHEET 2 A10 ASN A 69 LEU A 75 -1 O LEU A 70 N ILE A 50 SHEET 3 A10 ARG A 78 GLN A 84 -1 O VAL A 80 N GLY A 73 SHEET 4 A10 ILE A 29 ILE A 32 1 N ILE A 31 O MET A 83 SHEET 5 A10 ILE A 112 GLY A 121 1 O MET A 114 N GLY A 30 SHEET 6 A10 GLN A 236 ILE A 246 1 O GLN A 236 N LEU A 113 SHEET 7 A10 PHE A 131 TYR A 139 -1 N VAL A 132 O SER A 241 SHEET 8 A10 VAL A 189 MET A 196 1 O HIS A 190 N ILE A 133 SHEET 9 A10 VAL A 218 GLY A 220 1 O VAL A 218 N VAL A 195 SHEET 10 A10 ILE A 112 GLY A 121 -1 N GLY A 120 O VAL A 219 SHEET 1 B10 LYS B 45 PRO B 51 0 SHEET 2 B10 ASN B 69 LEU B 75 -1 O LEU B 70 N ILE B 50 SHEET 3 B10 ARG B 78 GLN B 84 -1 O GLN B 84 N ASN B 69 SHEET 4 B10 ILE B 29 ILE B 32 1 N ILE B 31 O MET B 83 SHEET 5 B10 ILE B 112 GLY B 121 1 O MET B 114 N GLY B 30 SHEET 6 B10 GLN B 236 ILE B 246 1 O GLN B 236 N LEU B 113 SHEET 7 B10 PHE B 131 TYR B 139 -1 N VAL B 132 O SER B 241 SHEET 8 B10 VAL B 189 MET B 196 1 O HIS B 190 N ILE B 133 SHEET 9 B10 VAL B 218 GLY B 220 1 O VAL B 218 N VAL B 195 SHEET 10 B10 ILE B 112 GLY B 121 -1 N GLY B 120 O VAL B 219 SHEET 1 C10 LYS C 45 PRO C 51 0 SHEET 2 C10 ASN C 69 LEU C 75 -1 O LEU C 70 N ILE C 50 SHEET 3 C10 ARG C 78 GLN C 84 -1 O GLN C 84 N ASN C 69 SHEET 4 C10 ILE C 29 ILE C 32 1 N ILE C 31 O MET C 83 SHEET 5 C10 ILE C 112 GLY C 121 1 O MET C 114 N GLY C 30 SHEET 6 C10 GLN C 236 ILE C 246 1 O GLN C 236 N LEU C 113 SHEET 7 C10 PHE C 131 TYR C 139 -1 N VAL C 132 O SER C 241 SHEET 8 C10 VAL C 189 MET C 196 1 O HIS C 190 N ILE C 133 SHEET 9 C10 VAL C 218 GLY C 220 1 O VAL C 218 N VAL C 195 SHEET 10 C10 ILE C 112 GLY C 121 -1 N GLY C 120 O VAL C 219 CISPEP 1 GLY A 199 PRO A 200 0 8.57 CISPEP 2 GLY B 199 PRO B 200 0 11.17 CISPEP 3 GLY C 199 PRO C 200 0 12.55 SITE 1 AC1 5 ASN A 95 ALA A 99 ARG A 103 ILE A 148 SITE 2 AC1 5 GLN A 154 SITE 1 AC2 9 GLY A 34 SER A 35 ARG A 86 HIS A 88 SITE 2 AC2 9 ASN A 117 ALA A 118 SER A 222 HOH A 733 SITE 3 AC2 9 HOH A 902 SITE 1 AC3 12 ALA A 118 ALA A 119 GLY A 120 ASN A 197 SITE 2 AC3 12 TYR A 202 GLU A 203 GLY A 220 MET A 221 SITE 3 AC3 12 THR A 244 ASN A 245 HOH A 739 HOH A 797 SITE 1 AC4 4 LEU A 140 GLY A 144 GLY B 144 LEU C 140 SITE 1 AC5 7 ASN B 95 ALA B 99 ARG B 103 ILE B 148 SITE 2 AC5 7 GLN B 154 HOH B 938 HOH B1023 SITE 1 AC6 7 GLY B 120 TYR B 202 GLU B 203 GLY B 220 SITE 2 AC6 7 MET B 221 HOH B1034 HOH B1050 SITE 1 AC7 7 ARG B 86 HIS B 88 ASN B 117 ALA B 118 SITE 2 AC7 7 SER B 222 HOH B 933 HOH B1113 SITE 1 AC8 7 ASN C 95 ALA C 99 ARG C 103 ILE C 148 SITE 2 AC8 7 GLN C 154 HOH C 753 HOH C 793 SITE 1 AC9 11 ALA C 118 ALA C 119 GLY C 120 TYR C 202 SITE 2 AC9 11 GLU C 203 GLY C 220 MET C 221 THR C 244 SITE 3 AC9 11 ASN C 245 HOH C 806 HOH C 906 SITE 1 BC1 10 GLY C 34 SER C 35 ARG C 86 HIS C 88 SITE 2 BC1 10 ASN C 117 ALA C 118 SER C 222 HOH C 856 SITE 3 BC1 10 HOH C 930 HOH C 942 CRYST1 46.821 118.121 129.055 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007749 0.00000