HEADER TRANSFERASE 24-AUG-08 3EA4 TITLE ARABIDOPSIS THALIANA ACETOHYDROXYACID SYNTHASE IN COMPLEX WITH TITLE 2 MONOSULFURON-ESTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETOLACTATE SYNTHASE, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 87-670; COMPND 5 EC: 2.2.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CSR 1.2, AT3G48560, T8P19.70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A(+) KEYWDS FAD AND THDP DEPENDENT ENZYME, AMINO-ACID BIOSYNTHESIS, BRANCHED- KEYWDS 2 CHAIN AMINO ACID BIOSYNTHESIS, CHLOROPLAST, FAD, FLAVOPROTEIN, KEYWDS 3 HERBICIDE RESISTANCE, MAGNESIUM, METAL-BINDING, THIAMINE KEYWDS 4 PYROPHOSPHATE, TRANSFERASE, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR L.W.GUDDAT,J.-G.WANG,Z.-M.LI REVDAT 4 01-NOV-23 3EA4 1 REMARK SEQADV LINK REVDAT 3 12-NOV-14 3EA4 1 HETATM HETNAM SEQRES REVDAT 2 13-JUL-11 3EA4 1 VERSN REVDAT 1 31-MAR-09 3EA4 0 JRNL AUTH J.-G.WANG,P.K.LEE,Y.-H.DONG,S.S.PANG,R.G.DUGGLEBY,Z.-M.LI, JRNL AUTH 2 L.W.GUDDAT JRNL TITL CRYSTAL STRUCTURES OF TWO NOVEL SULFONYLUREA HERBICIDES IN JRNL TITL 2 COMPLEX WITH ARABIDOPSIS THALIANA ACETOHYDROXYACID SYNTHASE. JRNL REF FEBS J. V. 276 1282 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19187232 JRNL DOI 10.1111/J.1742-4658.2009.06863.X REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 40611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2880 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4704 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6406 ; 1.153 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 5.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;35.918 ;24.495 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 765 ;15.789 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.658 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 713 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3568 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2161 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3230 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 204 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.064 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 93 ; 0.175 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2988 ; 0.363 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4697 ; 0.653 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1960 ; 0.846 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1708 ; 1.492 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 72.3973 81.7470 34.3002 REMARK 3 T TENSOR REMARK 3 T11: -0.1442 T22: -0.0676 REMARK 3 T33: -0.0085 T12: 0.0035 REMARK 3 T13: -0.0747 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.7312 L22: 1.2627 REMARK 3 L33: 1.7169 L12: -0.4702 REMARK 3 L13: -0.2342 L23: -0.1672 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: -0.0208 S13: 0.1840 REMARK 3 S21: 0.1544 S22: -0.0116 S23: -0.2891 REMARK 3 S31: -0.0691 S32: 0.2761 S33: 0.1044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): 60.3561 78.4449 50.2328 REMARK 3 T TENSOR REMARK 3 T11: -0.0699 T22: -0.1215 REMARK 3 T33: -0.1038 T12: 0.0859 REMARK 3 T13: -0.0305 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 1.0614 L22: 1.3523 REMARK 3 L33: 2.4500 L12: -0.3673 REMARK 3 L13: -0.2564 L23: -0.7765 REMARK 3 S TENSOR REMARK 3 S11: -0.1912 S12: -0.1110 S13: 0.1318 REMARK 3 S21: 0.3760 S22: 0.1519 S23: -0.0026 REMARK 3 S31: -0.2909 S32: -0.0544 S33: 0.0392 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 582 REMARK 3 ORIGIN FOR THE GROUP (A): 66.9422 62.6672 56.0218 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: -0.0639 REMARK 3 T33: -0.1405 T12: 0.1377 REMARK 3 T13: -0.0270 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 1.3119 L22: 2.0111 REMARK 3 L33: 0.9749 L12: -0.5102 REMARK 3 L13: -0.1170 L23: 0.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.2405 S12: -0.2892 S13: -0.0647 REMARK 3 S21: 0.4940 S22: 0.1773 S23: 0.0558 REMARK 3 S31: 0.1340 S32: 0.1435 S33: 0.0632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GE (III) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42923 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 58.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : 0.31500 REMARK 200 FOR SHELL : 0.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: 1YBH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES, 0.2M LI2SO4, 1M POTASSIUM REMARK 280 SODIUM TARTRATE, 1MM THDP, 1MM FAD, 1MM MGCL2, 5MM DTT, 1MM MSE , REMARK 280 PH 9.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.64933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.29867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.64933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 123.29867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.64933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 123.29867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.64933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 123.29867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 89.23400 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 154.55782 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.64933 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.23400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 154.55782 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 61.64933 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 89.23400 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 154.55782 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 61.64933 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 726 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 669 REMARK 465 TYR A 670 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 388 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 272 67.86 -102.33 REMARK 500 HIS A 347 -149.57 62.86 REMARK 500 ARG A 502 14.69 80.47 REMARK 500 ALA A 584 77.69 -113.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FAB A 696 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 699 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 538 OD1 REMARK 620 2 ASN A 565 OD1 87.7 REMARK 620 3 HIS A 567 O 90.6 72.3 REMARK 620 4 TDM A 698 O1A 95.5 153.3 81.2 REMARK 620 5 TDM A 698 O1B 172.2 92.3 82.0 81.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2SM A 695 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAB A 696 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHE A 697 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDM A 698 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 699 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E9Y RELATED DB: PDB REMARK 900 RELATED ID: 1YBH RELATED DB: PDB REMARK 900 RELATED ID: 1YHY RELATED DB: PDB REMARK 900 RELATED ID: 1YHZ RELATED DB: PDB REMARK 900 RELATED ID: 1YIO RELATED DB: PDB REMARK 900 RELATED ID: 1YI1 RELATED DB: PDB REMARK 900 RELATED ID: 1Z8N RELATED DB: PDB DBREF 3EA4 A 87 670 UNP P17597 ILVB_ARATH 87 670 SEQADV 3EA4 THR A 330 UNP P17597 SER 330 CONFLICT SEQRES 1 A 584 PHE ILE SER ARG PHE ALA PRO ASP GLN PRO ARG LYS GLY SEQRES 2 A 584 ALA ASP ILE LEU VAL GLU ALA LEU GLU ARG GLN GLY VAL SEQRES 3 A 584 GLU THR VAL PHE ALA TYR PRO GLY GLY ALA SER MET GLU SEQRES 4 A 584 ILE HIS GLN ALA LEU THR ARG SER SER SER ILE ARG ASN SEQRES 5 A 584 VAL LEU PRO ARG HIS GLU GLN GLY GLY VAL PHE ALA ALA SEQRES 6 A 584 GLU GLY TYR ALA ARG SER SER GLY LYS PRO GLY ILE CYS SEQRES 7 A 584 ILE ALA THR SER GLY PRO GLY ALA THR ASN LEU VAL SER SEQRES 8 A 584 GLY LEU ALA ASP ALA LEU LEU ASP SER VAL PRO LEU VAL SEQRES 9 A 584 ALA ILE THR GLY GLN VAL PRO ARG ARG MET ILE GLY THR SEQRES 10 A 584 ASP ALA PHE GLN GLU THR PRO ILE VAL GLU VAL THR ARG SEQRES 11 A 584 SER ILE THR LYS HIS ASN TYR LEU VAL MET ASP VAL GLU SEQRES 12 A 584 ASP ILE PRO ARG ILE ILE GLU GLU ALA PHE PHE LEU ALA SEQRES 13 A 584 THR SER GLY ARG PRO GLY PRO VAL LEU VAL ASP VAL PRO SEQRES 14 A 584 LYS ASP ILE GLN GLN GLN LEU ALA ILE PRO ASN TRP GLU SEQRES 15 A 584 GLN ALA MET ARG LEU PRO GLY TYR MET SER ARG MET PRO SEQRES 16 A 584 LYS PRO PRO GLU ASP SER HIS LEU GLU GLN ILE VAL ARG SEQRES 17 A 584 LEU ILE SER GLU SER LYS LYS PRO VAL LEU TYR VAL GLY SEQRES 18 A 584 GLY GLY CYS LEU ASN SER SER ASP GLU LEU GLY ARG PHE SEQRES 19 A 584 VAL GLU LEU THR GLY ILE PRO VAL ALA THR THR LEU MET SEQRES 20 A 584 GLY LEU GLY SER TYR PRO CSD ASP ASP GLU LEU SER LEU SEQRES 21 A 584 HIS MET LEU GLY MET HIS GLY THR VAL TYR ALA ASN TYR SEQRES 22 A 584 ALA VAL GLU HIS SER ASP LEU LEU LEU ALA PHE GLY VAL SEQRES 23 A 584 ARG PHE ASP ASP ARG VAL THR GLY LYS LEU GLU ALA PHE SEQRES 24 A 584 ALA SER ARG ALA LYS ILE VAL HIS ILE ASP ILE ASP SER SEQRES 25 A 584 ALA GLU ILE GLY LYS ASN LYS THR PRO HIS VAL SER VAL SEQRES 26 A 584 CYS GLY ASP VAL LYS LEU ALA LEU GLN GLY MET ASN LYS SEQRES 27 A 584 VAL LEU GLU ASN ARG ALA GLU GLU LEU LYS LEU ASP PHE SEQRES 28 A 584 GLY VAL TRP ARG ASN GLU LEU ASN VAL GLN LYS GLN LYS SEQRES 29 A 584 PHE PRO LEU SER PHE LYS THR PHE GLY GLU ALA ILE PRO SEQRES 30 A 584 PRO GLN TYR ALA ILE LYS VAL LEU ASP GLU LEU THR ASP SEQRES 31 A 584 GLY LYS ALA ILE ILE SER THR GLY VAL GLY GLN HIS GLN SEQRES 32 A 584 MET TRP ALA ALA GLN PHE TYR ASN TYR LYS LYS PRO ARG SEQRES 33 A 584 GLN TRP LEU SER SER GLY GLY LEU GLY ALA MET GLY PHE SEQRES 34 A 584 GLY LEU PRO ALA ALA ILE GLY ALA SER VAL ALA ASN PRO SEQRES 35 A 584 ASP ALA ILE VAL VAL ASP ILE ASP GLY ASP GLY SER PHE SEQRES 36 A 584 ILE MET ASN VAL GLN GLU LEU ALA THR ILE ARG VAL GLU SEQRES 37 A 584 ASN LEU PRO VAL LYS VAL LEU LEU LEU ASN ASN GLN HIS SEQRES 38 A 584 LEU GLY MET VAL MET GLN TRP GLU ASP ARG PHE TYR LYS SEQRES 39 A 584 ALA ASN ARG ALA HIS THR PHE LEU GLY ASP PRO ALA GLN SEQRES 40 A 584 GLU ASP GLU ILE PHE PRO ASN MET LEU LEU PHE ALA ALA SEQRES 41 A 584 ALA CYS GLY ILE PRO ALA ALA ARG VAL THR LYS LYS ALA SEQRES 42 A 584 ASP LEU ARG GLU ALA ILE GLN THR MET LEU ASP THR PRO SEQRES 43 A 584 GLY PRO TYR LEU LEU ASP VAL ILE CYS PRO HIS GLN GLU SEQRES 44 A 584 HIS VAL LEU PRO MET ILE PRO SER GLY GLY THR PHE ASN SEQRES 45 A 584 ASP VAL ILE THR GLU GLY ASP GLY ARG ILE LYS TYR MODRES 3EA4 CSD A 340 CYS 3-SULFINOALANINE HET CSD A 340 8 HET 2SM A 695 24 HET FAB A 696 53 HET NHE A 697 13 HET TDM A 698 29 HET MG A 699 1 HETNAM CSD 3-SULFINOALANINE HETNAM 2SM METHYL 2-{[(4-METHYLPYRIMIDIN-2-YL) HETNAM 2 2SM CARBAMOYL]SULFAMOYL}BENZOATE HETNAM FAB FLAVIN-ADENINE DINUCLEOTIDE-N5-ISOBUTYL KETONE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM TDM 2-[(2E)-3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2- HETNAM 2 TDM (1-HYDROXYETHYLIDENE)-4-METHYL-2,3-DIHYDRO-1,3- HETNAM 3 TDM THIAZOL-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN TDM 2-HYDROXYETHYLTHIAMIN DIPHOSPHATE FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 2SM C14 H14 N4 O5 S FORMUL 3 FAB C31 H39 N9 O16 P2 FORMUL 4 NHE C8 H17 N O3 S FORMUL 5 TDM C14 H22 N4 O8 P2 S FORMUL 6 MG MG 2+ FORMUL 7 HOH *108(H2 O) HELIX 1 1 GLY A 99 GLN A 110 1 12 HELIX 2 2 GLY A 120 ALA A 122 5 3 HELIX 3 3 SER A 123 SER A 133 1 11 HELIX 4 4 HIS A 143 GLY A 159 1 17 HELIX 5 5 GLY A 169 ASN A 174 1 6 HELIX 6 6 LEU A 175 SER A 186 1 12 HELIX 7 7 PRO A 197 ILE A 201 5 5 HELIX 8 8 PRO A 210 ARG A 216 1 7 HELIX 9 9 SER A 217 THR A 219 5 3 HELIX 10 10 ASP A 227 GLU A 229 5 3 HELIX 11 11 ASP A 230 SER A 244 1 15 HELIX 12 12 LYS A 256 GLN A 261 1 6 HELIX 13 13 LEU A 273 ARG A 279 1 7 HELIX 14 14 GLU A 285 SER A 299 1 15 HELIX 15 15 GLY A 308 LEU A 311 5 4 HELIX 16 16 SER A 313 GLY A 325 1 13 HELIX 17 17 THR A 354 SER A 364 1 11 HELIX 18 18 ASP A 375 GLY A 380 1 6 HELIX 19 19 LYS A 381 PHE A 385 5 5 HELIX 20 20 ASP A 397 ILE A 401 5 5 HELIX 21 21 ASP A 414 ARG A 429 1 16 HELIX 22 22 ARG A 429 LYS A 434 1 6 HELIX 23 23 PHE A 437 PHE A 451 1 15 HELIX 24 24 PRO A 463 ASP A 476 1 14 HELIX 25 25 GLY A 486 TYR A 496 1 11 HELIX 26 26 PHE A 515 ASN A 527 1 13 HELIX 27 27 ASP A 538 ASN A 544 1 7 HELIX 28 28 GLN A 546 GLU A 554 1 9 HELIX 29 29 LEU A 568 TYR A 579 1 12 HELIX 30 30 ASP A 590 GLU A 594 5 5 HELIX 31 31 ASN A 600 CYS A 608 1 9 HELIX 32 32 LYS A 617 ALA A 619 5 3 HELIX 33 33 ASP A 620 THR A 631 1 12 HELIX 34 34 THR A 656 VAL A 660 5 5 SHEET 1 A 2 ARG A 97 LYS A 98 0 SHEET 2 A 2 LEU A 262 ALA A 263 -1 O ALA A 263 N ARG A 97 SHEET 1 B 6 ARG A 137 ASN A 138 0 SHEET 2 B 6 THR A 114 ALA A 117 1 N VAL A 115 O ARG A 137 SHEET 3 B 6 GLY A 162 ALA A 166 1 O ILE A 165 N PHE A 116 SHEET 4 B 6 LEU A 189 GLN A 195 1 O VAL A 190 N GLY A 162 SHEET 5 B 6 PRO A 249 PRO A 255 1 O VAL A 254 N THR A 193 SHEET 6 B 6 HIS A 221 LEU A 224 1 N TYR A 223 O ASP A 253 SHEET 1 C 6 SER A 345 MET A 348 0 SHEET 2 C 6 VAL A 328 THR A 330 1 N VAL A 328 O LEU A 346 SHEET 3 C 6 PRO A 302 VAL A 306 1 N LEU A 304 O ALA A 329 SHEET 4 C 6 LEU A 366 PHE A 370 1 O LEU A 368 N TYR A 305 SHEET 5 C 6 LYS A 390 ASP A 395 1 O VAL A 392 N LEU A 367 SHEET 6 C 6 VAL A 409 CYS A 412 1 O VAL A 409 N HIS A 393 SHEET 1 D 6 TRP A 504 LEU A 505 0 SHEET 2 D 6 ILE A 480 THR A 483 1 N ILE A 481 O LEU A 505 SHEET 3 D 6 VAL A 532 GLY A 537 1 O VAL A 533 N ILE A 480 SHEET 4 D 6 VAL A 558 ASN A 564 1 O LYS A 559 N ASP A 534 SHEET 5 D 6 TYR A 635 ILE A 640 1 O VAL A 639 N ASN A 564 SHEET 6 D 6 ALA A 612 VAL A 615 1 N ALA A 613 O ASP A 638 LINK C PRO A 339 N CSD A 340 1555 1555 1.33 LINK C CSD A 340 N ASP A 341 1555 1555 1.34 LINK OD1 ASP A 538 MG MG A 699 1555 1555 2.39 LINK OD1 ASN A 565 MG MG A 699 1555 1555 2.25 LINK O HIS A 567 MG MG A 699 1555 1555 2.56 LINK O1A TDM A 698 MG MG A 699 1555 1555 1.93 LINK O1B TDM A 698 MG MG A 699 1555 1555 2.32 CISPEP 1 PHE A 598 PRO A 599 0 -8.02 CISPEP 2 LEU A 648 PRO A 649 0 -3.59 SITE 1 AC1 10 GLY A 121 VAL A 196 PRO A 197 PHE A 206 SITE 2 AC1 10 GLN A 207 LYS A 256 ASP A 376 ARG A 377 SITE 3 AC1 10 TRP A 574 SER A 653 SITE 1 AC2 32 PHE A 206 ARG A 246 GLY A 307 GLY A 308 SITE 2 AC2 32 GLY A 309 THR A 331 LEU A 332 MET A 333 SITE 3 AC2 32 LEU A 349 GLY A 350 MET A 351 HIS A 352 SITE 4 AC2 32 GLY A 371 VAL A 372 ARG A 373 ASP A 375 SITE 5 AC2 32 ARG A 377 VAL A 378 ASP A 395 ILE A 396 SITE 6 AC2 32 ASP A 397 GLU A 400 GLY A 413 ASP A 414 SITE 7 AC2 32 VAL A 415 GLN A 489 MET A 490 GLY A 508 SITE 8 AC2 32 GLY A 509 HOH A 704 HOH A 709 HOH A 800 SITE 1 AC3 6 HIS A 221 ARG A 272 LEU A 273 PRO A 274 SITE 2 AC3 6 GLY A 275 TYR A 276 SITE 1 AC4 24 TYR A 118 PRO A 119 GLY A 120 GLU A 144 SITE 2 AC4 24 PRO A 170 ASN A 174 GLN A 207 VAL A 485 SITE 3 AC4 24 GLY A 486 GLN A 487 HIS A 488 GLY A 511 SITE 4 AC4 24 MET A 513 GLY A 537 ASP A 538 GLY A 539 SITE 5 AC4 24 SER A 540 ASN A 565 HIS A 567 LEU A 568 SITE 6 AC4 24 GLY A 569 MET A 570 VAL A 571 MG A 699 SITE 1 AC5 4 ASP A 538 ASN A 565 HIS A 567 TDM A 698 CRYST1 178.468 178.468 184.948 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005603 0.003235 0.000000 0.00000 SCALE2 0.000000 0.006470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005407 0.00000