HEADER SIGNALING PROTEIN 25-AUG-08 3EAE TITLE PWWP DOMAIN OF HUMAN HEPATOMA-DERIVED GROWTH FACTOR 2 (HDGF2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOMA-DERIVED GROWTH FACTOR-RELATED PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-93; COMPND 5 SYNONYM: HRP-2, HEPATOMA-DERIVED GROWTH FACTOR 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDGFRP2, HDGF2, UNQ785/PRO1604; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN HEPATOMA-DERIVED GROWTH FACTOR 2, HEPATOMA-DERIVED GROWTH KEYWDS 2 FACTOR-RELATED PROTEIN 2, HDGF2, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, SGC, PHOSPHOPROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.AMAYA,H.ZENG,F.MACKENZIE,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 8 30-AUG-23 3EAE 1 REMARK REVDAT 7 25-OCT-17 3EAE 1 REMARK REVDAT 6 20-JUL-11 3EAE 1 JRNL REVDAT 5 13-JUL-11 3EAE 1 VERSN REVDAT 4 28-APR-10 3EAE 1 AUTHOR REVDAT 3 25-AUG-09 3EAE 1 REMARK REVDAT 2 24-FEB-09 3EAE 1 VERSN REVDAT 1 16-SEP-08 3EAE 0 JRNL AUTH H.WU,H.ZENG,R.LAM,W.TEMPEL,M.F.AMAYA,C.XU,L.DOMBROVSKI, JRNL AUTH 2 W.QIU,Y.WANG,J.MIN JRNL TITL STRUCTURAL AND HISTONE BINDING ABILITY CHARACTERIZATIONS OF JRNL TITL 2 HUMAN PWWP DOMAINS. JRNL REF PLOS ONE V. 6 18919 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21720545 JRNL DOI 10.1371/JOURNAL.PONE.0018919 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 12780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 724 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.26000 REMARK 3 B22 (A**2) : 3.56000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.564 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1379 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1878 ; 1.261 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 164 ; 7.081 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;27.567 ;23.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 177 ;14.386 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;20.709 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 173 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1134 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 486 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 893 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 37 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 850 ; 0.605 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1329 ; 1.009 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 615 ; 1.680 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 549 ; 2.379 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0601 48.8531 -5.0603 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.1942 REMARK 3 T33: 0.1874 T12: -0.0684 REMARK 3 T13: 0.0233 T23: 0.0606 REMARK 3 L TENSOR REMARK 3 L11: 16.4280 L22: 8.0876 REMARK 3 L33: 12.8956 L12: -5.6157 REMARK 3 L13: 7.1118 L23: -4.9561 REMARK 3 S TENSOR REMARK 3 S11: -0.2616 S12: 0.8433 S13: 0.9443 REMARK 3 S21: 0.1628 S22: 0.0291 S23: -0.4283 REMARK 3 S31: -0.6381 S32: 0.1133 S33: 0.2326 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0981 36.0774 2.4575 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1959 REMARK 3 T33: 0.1869 T12: -0.1112 REMARK 3 T13: -0.0041 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 6.1298 L22: 4.9149 REMARK 3 L33: 6.1488 L12: -0.8441 REMARK 3 L13: -2.1573 L23: -2.2751 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: 0.2625 S13: -0.7442 REMARK 3 S21: 0.1125 S22: 0.0555 S23: 0.3212 REMARK 3 S31: 0.7963 S32: -0.3814 S33: -0.0264 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3795 37.3522 -14.6102 REMARK 3 T TENSOR REMARK 3 T11: 0.3776 T22: 0.6340 REMARK 3 T33: 0.2771 T12: 0.0646 REMARK 3 T13: 0.1391 T23: -0.2338 REMARK 3 L TENSOR REMARK 3 L11: 12.6104 L22: 2.4123 REMARK 3 L33: 14.1055 L12: 4.6747 REMARK 3 L13: 3.8020 L23: -1.5577 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: 2.1868 S13: -1.3004 REMARK 3 S21: -0.4893 S22: 0.2422 S23: -0.8771 REMARK 3 S31: -0.2167 S32: 1.1787 S33: -0.3498 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8636 36.8654 -5.2275 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.1361 REMARK 3 T33: 0.1395 T12: -0.0517 REMARK 3 T13: 0.0002 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 4.9573 L22: 5.3115 REMARK 3 L33: 22.0441 L12: -1.1832 REMARK 3 L13: 4.9798 L23: -3.6940 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: 0.4758 S13: -0.1974 REMARK 3 S21: -0.1805 S22: -0.1021 S23: 0.0791 REMARK 3 S31: 0.2607 S32: -0.4642 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3375 39.1224 -1.6845 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.1919 REMARK 3 T33: 0.1017 T12: -0.0727 REMARK 3 T13: 0.0376 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 8.2173 L22: 5.5034 REMARK 3 L33: 4.8835 L12: -4.2233 REMARK 3 L13: 0.6276 L23: 0.7077 REMARK 3 S TENSOR REMARK 3 S11: -0.1443 S12: 0.3407 S13: -0.4028 REMARK 3 S21: -0.1715 S22: 0.1736 S23: 0.1934 REMARK 3 S31: 0.3721 S32: -0.2485 S33: -0.0293 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0366 41.6557 11.7228 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.2777 REMARK 3 T33: 0.1316 T12: 0.0820 REMARK 3 T13: 0.0454 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 7.8081 L22: 13.9963 REMARK 3 L33: 16.6427 L12: -4.1345 REMARK 3 L13: 5.3805 L23: -6.6826 REMARK 3 S TENSOR REMARK 3 S11: -0.3860 S12: -0.9478 S13: 0.0176 REMARK 3 S21: 0.7793 S22: 0.1417 S23: 0.4107 REMARK 3 S31: -0.2294 S32: -0.9472 S33: 0.2442 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7631 30.1890 9.8295 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.1529 REMARK 3 T33: 0.2605 T12: -0.0930 REMARK 3 T13: 0.0323 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 9.9495 L22: 4.5720 REMARK 3 L33: 11.3583 L12: -4.3402 REMARK 3 L13: 9.9848 L23: -2.4624 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.5934 S13: -1.1328 REMARK 3 S21: -0.2669 S22: 0.5606 S23: -0.0515 REMARK 3 S31: 1.2946 S32: -0.5565 S33: -0.5801 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5677 38.3975 4.5513 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.2057 REMARK 3 T33: 0.1817 T12: 0.0213 REMARK 3 T13: 0.0129 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 10.5581 L22: 1.8267 REMARK 3 L33: 16.1106 L12: 3.0010 REMARK 3 L13: -5.6948 L23: -2.6427 REMARK 3 S TENSOR REMARK 3 S11: -0.1621 S12: -0.2947 S13: -0.5481 REMARK 3 S21: -0.0752 S22: -0.1218 S23: -0.2997 REMARK 3 S31: 0.2668 S32: 0.8832 S33: 0.2840 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 10 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3637 42.6148 30.4898 REMARK 3 T TENSOR REMARK 3 T11: 0.6460 T22: 0.5593 REMARK 3 T33: 0.1607 T12: -0.2187 REMARK 3 T13: -0.1473 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 24.9467 L22: 18.0888 REMARK 3 L33: 14.9676 L12: -4.1764 REMARK 3 L13: 3.1747 L23: -10.5505 REMARK 3 S TENSOR REMARK 3 S11: 0.2494 S12: -1.9110 S13: 1.1378 REMARK 3 S21: 2.3230 S22: -0.6121 S23: -1.4048 REMARK 3 S31: -2.4148 S32: 1.4887 S33: 0.3627 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0359 29.0829 23.0252 REMARK 3 T TENSOR REMARK 3 T11: 0.2127 T22: 0.3320 REMARK 3 T33: 0.3991 T12: 0.0726 REMARK 3 T13: -0.0567 T23: 0.2431 REMARK 3 L TENSOR REMARK 3 L11: 9.8076 L22: 12.1116 REMARK 3 L33: 15.4641 L12: -6.2237 REMARK 3 L13: 4.9084 L23: 3.3085 REMARK 3 S TENSOR REMARK 3 S11: 0.6355 S12: -1.0611 S13: -1.5858 REMARK 3 S21: -0.0906 S22: -0.2916 S23: 0.2451 REMARK 3 S31: 1.3742 S32: 0.9112 S33: -0.3439 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0790 35.5639 26.9757 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.1512 REMARK 3 T33: -0.0312 T12: 0.0108 REMARK 3 T13: -0.1231 T23: 0.1637 REMARK 3 L TENSOR REMARK 3 L11: 6.3231 L22: 11.5535 REMARK 3 L33: 24.0216 L12: 8.0843 REMARK 3 L13: 3.8921 L23: -0.1551 REMARK 3 S TENSOR REMARK 3 S11: -0.2294 S12: -1.0918 S13: -0.8569 REMARK 3 S21: 0.3923 S22: -0.2724 S23: 0.3940 REMARK 3 S31: 0.0846 S32: 0.0172 S33: 0.5017 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 48 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5517 33.9404 30.3959 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2665 REMARK 3 T33: 0.1096 T12: -0.0469 REMARK 3 T13: -0.0484 T23: 0.2041 REMARK 3 L TENSOR REMARK 3 L11: 15.5654 L22: 4.5238 REMARK 3 L33: 22.2879 L12: 2.7396 REMARK 3 L13: 9.4699 L23: -0.6061 REMARK 3 S TENSOR REMARK 3 S11: 0.5823 S12: -1.0634 S13: 0.2433 REMARK 3 S21: 0.6815 S22: -0.6480 S23: -0.3770 REMARK 3 S31: -0.0129 S32: -0.2531 S33: 0.0657 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3378 33.7639 28.7247 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.2926 REMARK 3 T33: 0.0392 T12: 0.0003 REMARK 3 T13: -0.0799 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 28.0052 L22: 7.5452 REMARK 3 L33: 15.6982 L12: 5.6948 REMARK 3 L13: -2.2335 L23: -7.9716 REMARK 3 S TENSOR REMARK 3 S11: 0.8896 S12: -1.8175 S13: -1.2009 REMARK 3 S21: 1.0767 S22: -1.1633 S23: -0.4973 REMARK 3 S31: -0.0507 S32: 2.5198 S33: 0.2737 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2061 39.5062 16.6555 REMARK 3 T TENSOR REMARK 3 T11: -0.0142 T22: 0.3763 REMARK 3 T33: 0.0701 T12: -0.0125 REMARK 3 T13: -0.0228 T23: 0.1985 REMARK 3 L TENSOR REMARK 3 L11: 19.0965 L22: 30.1460 REMARK 3 L33: 36.8150 L12: 4.0313 REMARK 3 L13: -5.3002 L23: 0.5626 REMARK 3 S TENSOR REMARK 3 S11: 0.4131 S12: 1.1412 S13: 0.6484 REMARK 3 S21: -0.3665 S22: -0.8767 S23: -0.0085 REMARK 3 S31: -1.1489 S32: 2.0986 S33: 0.4636 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9973 29.2374 14.2350 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.2204 REMARK 3 T33: 0.1927 T12: 0.2424 REMARK 3 T13: -0.1207 T23: 0.0551 REMARK 3 L TENSOR REMARK 3 L11: 4.8440 L22: 37.8123 REMARK 3 L33: 12.5919 L12: 8.5262 REMARK 3 L13: -3.4833 L23: 6.6617 REMARK 3 S TENSOR REMARK 3 S11: -0.5080 S12: 1.1011 S13: -1.8543 REMARK 3 S21: -0.7518 S22: 0.1050 S23: -1.3061 REMARK 3 S31: 2.0672 S32: 1.1434 S33: 0.4029 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3453 38.3147 20.1254 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.2613 REMARK 3 T33: 0.1328 T12: 0.0096 REMARK 3 T13: 0.0645 T23: 0.0882 REMARK 3 L TENSOR REMARK 3 L11: 3.7185 L22: 7.5554 REMARK 3 L33: 13.7175 L12: 2.8189 REMARK 3 L13: 3.8104 L23: -3.8962 REMARK 3 S TENSOR REMARK 3 S11: 0.1656 S12: -0.5523 S13: -0.0775 REMARK 3 S21: 0.4448 S22: -0.1226 S23: 0.6245 REMARK 3 S31: -0.6500 S32: -0.4737 S33: -0.0430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12780 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.9470 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRIES 2HTS AND 2NLU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M NH4SO4, 0.2 M K/NA TART, 0.1 M REMARK 280 NA CITRATE PH 5.6., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.77750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.47100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.97500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.47100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.77750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.97500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 4 REMARK 465 ILE B 28 REMARK 465 ALA B 29 REMARK 465 ASP B 30 REMARK 465 GLY B 31 REMARK 465 ALA B 32 REMARK 465 VAL B 33 REMARK 465 LYS B 34 REMARK 465 PRO B 35 REMARK 465 PRO B 36 REMARK 465 PRO B 37 REMARK 465 ASN B 38 REMARK 465 SER B 91 REMARK 465 TYR B 92 REMARK 465 SER B 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 28 CG1 CG2 CD1 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 SER A 93 OG REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 75 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 87 67.37 -154.36 REMARK 500 ASP B 26 -161.86 -104.18 REMARK 500 ASN B 87 59.17 -141.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 3EAE A 1 93 UNP Q7Z4V5 HDGR2_HUMAN 1 93 DBREF 3EAE B 1 93 UNP Q7Z4V5 HDGR2_HUMAN 1 93 SEQRES 1 A 93 MET PRO HIS ALA PHE LYS PRO GLY ASP LEU VAL PHE ALA SEQRES 2 A 93 LYS MET LYS GLY TYR PRO HIS TRP PRO ALA ARG ILE ASP SEQRES 3 A 93 ASP ILE ALA ASP GLY ALA VAL LYS PRO PRO PRO ASN LYS SEQRES 4 A 93 TYR PRO ILE PHE PHE PHE GLY THR HIS GLU THR ALA PHE SEQRES 5 A 93 LEU GLY PRO LYS ASP LEU PHE PRO TYR ASP LYS CYS LYS SEQRES 6 A 93 ASP LYS TYR GLY LYS PRO ASN LYS ARG LYS GLY PHE ASN SEQRES 7 A 93 GLU GLY LEU TRP GLU ILE GLN ASN ASN PRO HIS ALA SER SEQRES 8 A 93 TYR SER SEQRES 1 B 93 MET PRO HIS ALA PHE LYS PRO GLY ASP LEU VAL PHE ALA SEQRES 2 B 93 LYS MET LYS GLY TYR PRO HIS TRP PRO ALA ARG ILE ASP SEQRES 3 B 93 ASP ILE ALA ASP GLY ALA VAL LYS PRO PRO PRO ASN LYS SEQRES 4 B 93 TYR PRO ILE PHE PHE PHE GLY THR HIS GLU THR ALA PHE SEQRES 5 B 93 LEU GLY PRO LYS ASP LEU PHE PRO TYR ASP LYS CYS LYS SEQRES 6 B 93 ASP LYS TYR GLY LYS PRO ASN LYS ARG LYS GLY PHE ASN SEQRES 7 B 93 GLU GLY LEU TRP GLU ILE GLN ASN ASN PRO HIS ALA SER SEQRES 8 B 93 TYR SER FORMUL 3 HOH *45(H2 O) HELIX 1 1 GLY A 54 LYS A 56 5 3 HELIX 2 2 TYR A 61 GLY A 69 1 9 HELIX 3 3 GLY A 76 ASN A 87 1 12 HELIX 4 4 GLY B 54 LYS B 56 5 3 HELIX 5 5 TYR B 61 GLY B 69 1 9 HELIX 6 6 GLY B 76 ASN B 87 1 12 SHEET 1 A 5 THR A 50 LEU A 53 0 SHEET 2 A 5 TYR A 40 PHE A 44 -1 N ILE A 42 O ALA A 51 SHEET 3 A 5 TRP A 21 ILE A 25 -1 N ARG A 24 O PHE A 43 SHEET 4 A 5 LEU A 10 ALA A 13 -1 N ALA A 13 O TRP A 21 SHEET 5 A 5 LEU A 58 PRO A 60 -1 O PHE A 59 N PHE A 12 SHEET 1 B 5 THR B 50 LEU B 53 0 SHEET 2 B 5 TYR B 40 PHE B 44 -1 N ILE B 42 O ALA B 51 SHEET 3 B 5 TRP B 21 ILE B 25 -1 N ARG B 24 O PHE B 43 SHEET 4 B 5 LEU B 10 ALA B 13 -1 N VAL B 11 O ALA B 23 SHEET 5 B 5 LEU B 58 PRO B 60 -1 O PHE B 59 N PHE B 12 CRYST1 41.555 59.950 104.942 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024064 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009529 0.00000