HEADER HYDROLASE 27-AUG-08 3EB9 TITLE CRYSTAL STRUCTURE OF 6-PHOSPHOGLUCONOLACTONASE FROM TRYPANOSOMA BRUCEI TITLE 2 COMPLEXED WITH CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONOLACTONASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: 6PGL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS CATALYTIC MECHANISM, PENTOSE PHOSPHATE PATHWAY, 6- KEYWDS 2 PHOSPHOGLUCONOLACTONASE, TRYPANOSOMA BRUCEI, HYDROLASE, ZINC BINDING KEYWDS 3 SITE EXPDTA X-RAY DIFFRACTION AUTHOR L.POGGI,M.DELARUE,N.DUCLERT-SAVATIER,V.STOVEN REVDAT 3 30-AUG-23 3EB9 1 REMARK REVDAT 2 24-JUL-19 3EB9 1 REMARK REVDAT 1 26-MAY-09 3EB9 0 JRNL AUTH N.DUCLERT-SAVATIER,L.POGGI,E.MICLET,P.LOPES,J.OUAZZANI, JRNL AUTH 2 N.CHEVALIER,M.NILGES,M.DELARUE,V.STOVEN JRNL TITL INSIGHTS INTO THE ENZYMATIC MECHANISM OF JRNL TITL 2 6-PHOSPHOGLUCONOLACTONASE FROM TRYPANOSOMA BRUCEI USING JRNL TITL 3 STRUCTURAL DATA AND MOLECULAR DYNAMICS SIMULATION. JRNL REF J.MOL.BIOL. V. 388 1009 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19345229 JRNL DOI 10.1016/J.JMB.2009.03.063 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 36055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1798 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2026 REMARK 3 BIN FREE R VALUE SET COUNT : 283 REMARK 3 BIN FREE R VALUE : 0.2685 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 428 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.63119 REMARK 3 B22 (A**2) : 7.16647 REMARK 3 B33 (A**2) : -1.53528 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.55975 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.149 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36055 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2J0E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.60500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 262 REMARK 465 LEU A 263 REMARK 465 ALA A 264 REMARK 465 LYS A 265 REMARK 465 PHE A 266 REMARK 465 MET B 1 REMARK 465 LYS B 265 REMARK 465 PHE B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 224 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 148 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG B 64 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 64 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 125 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 125 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 64 -72.71 -95.94 REMARK 500 LEU A 95 -56.86 -142.83 REMARK 500 GLU A 145 -13.30 71.70 REMARK 500 PRO A 148 162.04 -47.53 REMARK 500 ALA A 167 -132.46 44.21 REMARK 500 HIS A 236 -65.17 -125.69 REMARK 500 ALA A 260 -71.56 -81.57 REMARK 500 ARG B 64 -64.89 -95.64 REMARK 500 LEU B 95 -48.12 -142.94 REMARK 500 ALA B 116 140.41 -173.28 REMARK 500 ALA B 146 -0.70 68.80 REMARK 500 ALA B 167 -132.61 56.69 REMARK 500 ALA B 241 -8.90 -59.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 NE2 REMARK 620 2 HIS A 97 NE2 114.0 REMARK 620 3 ASP A 98 OD1 88.8 95.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 56 NE2 REMARK 620 2 HIS B 97 NE2 114.9 REMARK 620 3 ASP B 98 OD1 86.0 96.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 3209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 3209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E7F RELATED DB: PDB REMARK 900 RELATED ID: 2J0E RELATED DB: PDB DBREF 3EB9 A 1 266 UNP Q9GRG6 Q9GRG6_9TRYP 1 266 DBREF 3EB9 B 1 266 UNP Q9GRG6 Q9GRG6_9TRYP 1 266 SEQRES 1 A 266 MET SER PHE LYS PRO THR ILE SER VAL HIS ALA THR PRO SEQRES 2 A 266 GLN GLU LEU SER ALA ALA GLY CYS ARG LYS ILE VAL GLU SEQRES 3 A 266 ILE ILE GLU ALA SER GLY SER GLN GLN TRP PRO LEU SER SEQRES 4 A 266 ILE ALA LEU ALA GLY GLY SER THR PRO LYS MET THR TYR SEQRES 5 A 266 ALA ARG LEU HIS ASP GLU HIS LEU ASN LEU LEU ARG GLU SEQRES 6 A 266 LYS ARG ALA LEU ARG PHE PHE MET GLY ASP GLU ARG MET SEQRES 7 A 266 VAL PRO ALA ASP SER THR ASP SER ASN TYR ASN MET ALA SEQRES 8 A 266 ARG GLU VAL LEU LEU HIS ASP ILE PRO ASP ASP LEU VAL SEQRES 9 A 266 PHE PRO PHE ASP THR SER ALA VAL THR PRO SER ALA GLU SEQRES 10 A 266 ALA THR SER ALA ASP ALA MET ARG VAL ALA GLU ALA TYR SEQRES 11 A 266 GLY LYS GLN LEU ALA SER LEU LEU PRO LEU LYS SER VAL SEQRES 12 A 266 GLY GLU ALA GLY PRO LYS VAL PRO VAL PHE ASP VAL VAL SEQRES 13 A 266 LEU LEU GLY LEU GLY SER ASP GLY HIS THR ALA SER ILE SEQRES 14 A 266 PHE PRO GLY SER GLN ALA GLU LYS GLU THR ASP GLY LYS SEQRES 15 A 266 VAL VAL VAL SER VAL GLY PHE PRO SER GLU THR MET LYS SEQRES 16 A 266 PRO LYS VAL TRP ARG VAL THR LEU SER PRO ALA THR ILE SEQRES 17 A 266 MET GLN ALA ARG ASN VAL ILE VAL LEU ALA THR GLY ALA SEQRES 18 A 266 GLU LYS LYS TRP VAL VAL ASP GLY ILE LEU ALA ASP THR SEQRES 19 A 266 ALA HIS LYS ALA PRO VAL ALA ARG PHE LEU ARG GLY CYS SEQRES 20 A 266 GLU GLY ASN VAL SER PHE LEU LEU ASP LYS GLU ILE ALA SEQRES 21 A 266 GLU ASN LEU ALA LYS PHE SEQRES 1 B 266 MET SER PHE LYS PRO THR ILE SER VAL HIS ALA THR PRO SEQRES 2 B 266 GLN GLU LEU SER ALA ALA GLY CYS ARG LYS ILE VAL GLU SEQRES 3 B 266 ILE ILE GLU ALA SER GLY SER GLN GLN TRP PRO LEU SER SEQRES 4 B 266 ILE ALA LEU ALA GLY GLY SER THR PRO LYS MET THR TYR SEQRES 5 B 266 ALA ARG LEU HIS ASP GLU HIS LEU ASN LEU LEU ARG GLU SEQRES 6 B 266 LYS ARG ALA LEU ARG PHE PHE MET GLY ASP GLU ARG MET SEQRES 7 B 266 VAL PRO ALA ASP SER THR ASP SER ASN TYR ASN MET ALA SEQRES 8 B 266 ARG GLU VAL LEU LEU HIS ASP ILE PRO ASP ASP LEU VAL SEQRES 9 B 266 PHE PRO PHE ASP THR SER ALA VAL THR PRO SER ALA GLU SEQRES 10 B 266 ALA THR SER ALA ASP ALA MET ARG VAL ALA GLU ALA TYR SEQRES 11 B 266 GLY LYS GLN LEU ALA SER LEU LEU PRO LEU LYS SER VAL SEQRES 12 B 266 GLY GLU ALA GLY PRO LYS VAL PRO VAL PHE ASP VAL VAL SEQRES 13 B 266 LEU LEU GLY LEU GLY SER ASP GLY HIS THR ALA SER ILE SEQRES 14 B 266 PHE PRO GLY SER GLN ALA GLU LYS GLU THR ASP GLY LYS SEQRES 15 B 266 VAL VAL VAL SER VAL GLY PHE PRO SER GLU THR MET LYS SEQRES 16 B 266 PRO LYS VAL TRP ARG VAL THR LEU SER PRO ALA THR ILE SEQRES 17 B 266 MET GLN ALA ARG ASN VAL ILE VAL LEU ALA THR GLY ALA SEQRES 18 B 266 GLU LYS LYS TRP VAL VAL ASP GLY ILE LEU ALA ASP THR SEQRES 19 B 266 ALA HIS LYS ALA PRO VAL ALA ARG PHE LEU ARG GLY CYS SEQRES 20 B 266 GLU GLY ASN VAL SER PHE LEU LEU ASP LYS GLU ILE ALA SEQRES 21 B 266 GLU ASN LEU ALA LYS PHE HET ZN A 301 1 HET FLC A3209 13 HET ZN B 300 1 HET FLC B3209 13 HETNAM ZN ZINC ION HETNAM FLC CITRATE ANION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FLC 2(C6 H5 O7 3-) FORMUL 7 HOH *428(H2 O) HELIX 1 1 THR A 12 GLY A 32 1 21 HELIX 2 2 SER A 33 TRP A 36 5 4 HELIX 3 3 GLY A 45 ARG A 64 1 20 HELIX 4 4 SER A 86 LEU A 95 1 10 HELIX 5 5 LEU A 96 ILE A 99 5 4 HELIX 6 6 PRO A 100 ASP A 102 5 3 HELIX 7 7 THR A 119 LEU A 138 1 20 HELIX 8 8 GLN A 174 GLU A 178 5 5 HELIX 9 9 SER A 204 GLN A 210 1 7 HELIX 10 10 GLY A 220 GLU A 222 5 3 HELIX 11 11 LYS A 223 ALA A 232 1 10 HELIX 12 12 PRO A 239 CYS A 247 5 9 HELIX 13 13 LYS A 257 GLU A 261 1 5 HELIX 14 14 THR B 12 SER B 31 1 20 HELIX 15 15 GLY B 32 TRP B 36 5 5 HELIX 16 16 GLY B 45 HIS B 59 1 15 HELIX 17 17 HIS B 59 ARG B 64 1 6 HELIX 18 18 SER B 86 LEU B 95 1 10 HELIX 19 19 LEU B 96 ILE B 99 5 4 HELIX 20 20 PRO B 100 ASP B 102 5 3 HELIX 21 21 THR B 119 LEU B 138 1 20 HELIX 22 22 GLN B 174 GLU B 178 5 5 HELIX 23 23 SER B 204 ALA B 211 1 8 HELIX 24 24 GLY B 220 GLU B 222 5 3 HELIX 25 25 LYS B 223 ALA B 232 1 10 HELIX 26 26 PRO B 239 CYS B 247 5 9 SHEET 1 A 7 THR A 6 HIS A 10 0 SHEET 2 A 7 ASN A 250 ASP A 256 1 O LEU A 255 N HIS A 10 SHEET 3 A 7 ASN A 213 ALA A 218 1 N VAL A 216 O LEU A 254 SHEET 4 A 7 VAL A 155 LEU A 158 1 N LEU A 158 O ILE A 215 SHEET 5 A 7 LEU A 38 LEU A 42 1 N ALA A 41 O LEU A 157 SHEET 6 A 7 LEU A 69 MET A 73 1 O PHE A 72 N LEU A 42 SHEET 7 A 7 VAL A 104 PHE A 105 1 O PHE A 105 N PHE A 71 SHEET 1 B 3 ASP A 75 ARG A 77 0 SHEET 2 B 3 ARG A 200 LEU A 203 -1 O VAL A 201 N GLU A 76 SHEET 3 B 3 VAL A 185 GLY A 188 -1 N GLY A 188 O ARG A 200 SHEET 1 C 2 LEU A 140 SER A 142 0 SHEET 2 C 2 LYS A 149 PRO A 151 -1 O VAL A 150 N LYS A 141 SHEET 1 D 7 THR B 6 HIS B 10 0 SHEET 2 D 7 ASN B 250 ASP B 256 1 O PHE B 253 N THR B 6 SHEET 3 D 7 ASN B 213 ALA B 218 1 N VAL B 216 O LEU B 254 SHEET 4 D 7 VAL B 155 LEU B 158 1 N LEU B 158 O ILE B 215 SHEET 5 D 7 LEU B 38 LEU B 42 1 N ALA B 41 O LEU B 157 SHEET 6 D 7 LEU B 69 MET B 73 1 O ARG B 70 N LEU B 38 SHEET 7 D 7 VAL B 104 PHE B 105 1 O PHE B 105 N PHE B 71 SHEET 1 E 3 ASP B 75 ARG B 77 0 SHEET 2 E 3 ARG B 200 LEU B 203 -1 O VAL B 201 N GLU B 76 SHEET 3 E 3 VAL B 185 GLY B 188 -1 N SER B 186 O THR B 202 SHEET 1 F 2 LEU B 140 SER B 142 0 SHEET 2 F 2 LYS B 149 PRO B 151 -1 O VAL B 150 N LYS B 141 LINK NE2 HIS A 56 ZN ZN A 301 1555 1555 1.99 LINK NE2 HIS A 97 ZN ZN A 301 1555 1555 2.05 LINK OD1 ASP A 98 ZN ZN A 301 1555 1555 1.89 LINK NE2 HIS B 56 ZN ZN B 300 1555 1555 2.18 LINK NE2 HIS B 97 ZN ZN B 300 1555 1555 2.10 LINK OD1 ASP B 98 ZN ZN B 300 1555 1555 1.99 CISPEP 1 TRP A 36 PRO A 37 0 -0.20 CISPEP 2 LYS A 195 PRO A 196 0 -1.65 CISPEP 3 TRP B 36 PRO B 37 0 0.54 CISPEP 4 LYS B 195 PRO B 196 0 0.70 SITE 1 AC1 4 HIS A 56 HIS A 97 ASP A 98 HOH A 304 SITE 1 AC2 10 ARG A 77 GLY A 159 LEU A 160 HIS A 165 SITE 2 AC2 10 ALA A 167 LYS A 195 ARG A 200 HOH A 269 SITE 3 AC2 10 HOH A 275 HOH A 355 SITE 1 AC3 4 HIS B 56 HIS B 97 ASP B 98 HOH B 319 SITE 1 AC4 10 ARG B 77 ASN B 87 HIS B 165 ALA B 167 SITE 2 AC4 10 MET B 194 LYS B 195 ARG B 200 HOH B 271 SITE 3 AC4 10 HOH B 294 HOH B 318 CRYST1 49.460 87.210 64.790 90.00 96.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020218 0.000000 0.002314 0.00000 SCALE2 0.000000 0.011467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015535 0.00000