HEADER HYDROLASE 27-AUG-08 3EBG TITLE STRUCTURE OF THE M1 ALANYLAMINOPEPTIDASE FROM MALARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PFA-M1; COMPND 5 EC: 3.4.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 186763; SOURCE 4 STRAIN: D10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRCHIS2B KEYWDS HYDROLASE, AMINOPEPTIDASE, METAL-BINDING, METALLOPROTEASE, PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MCGOWAN,C.J.PORTER,A.M.BUCKLE,J.C.WHISSTOCK REVDAT 6 21-FEB-24 3EBG 1 REMARK REVDAT 5 20-OCT-21 3EBG 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3EBG 1 VERSN REVDAT 3 17-MAR-09 3EBG 1 JRNL REVDAT 2 17-FEB-09 3EBG 1 JRNL REVDAT 1 27-JAN-09 3EBG 0 JRNL AUTH S.MCGOWAN,C.J.PORTER,J.LOWTHER,C.M.STACK,S.J.GOLDING, JRNL AUTH 2 T.S.SKINNER-ADAMS,K.R.TRENHOLME,F.TEUSCHER,S.M.DONNELLY, JRNL AUTH 3 J.GREMBECKA,A.MUCHA,P.KAFARSKI,R.DEGORI,A.M.BUCKLE, JRNL AUTH 4 D.L.GARDINER,J.C.WHISSTOCK,J.P.DALTON JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF THE ESSENTIAL JRNL TITL 2 PLASMODIUM FALCIPARUM M1 NEUTRAL AMINOPEPTIDASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2537 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196988 JRNL DOI 10.1073/PNAS.0807398106 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 53946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3511 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7177 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 762 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7434 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10081 ; 1.134 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 912 ; 5.775 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 351 ;36.231 ;24.843 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1314 ;13.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1122 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5591 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3508 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5106 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 680 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.070 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4635 ; 0.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7288 ; 0.791 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3215 ; 1.306 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2781 ; 2.052 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 416 2 REMARK 3 1 B 4 B 416 2 REMARK 3 2 A 421 A 435 2 REMARK 3 2 B 421 B 435 2 REMARK 3 3 A 447 A 888 2 REMARK 3 3 B 447 B 888 2 REMARK 3 4 A 417 A 420 6 REMARK 3 4 B 417 B 420 6 REMARK 3 5 A 436 A 446 6 REMARK 3 5 B 436 B 446 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3409 ; 0.020 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 3547 ; 0.220 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 104 ; 0.450 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 3409 ; 0.120 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3547 ; 0.800 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 104 ; 1.370 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3408 26.7847 20.7178 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: -0.0023 REMARK 3 T33: 0.0394 T12: 0.0332 REMARK 3 T13: -0.0221 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.9721 L22: 0.6010 REMARK 3 L33: 0.7206 L12: -0.0779 REMARK 3 L13: -0.3056 L23: 0.0855 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: -0.0963 S13: 0.1034 REMARK 3 S21: 0.0193 S22: 0.0219 S23: 0.0223 REMARK 3 S31: -0.0626 S32: -0.0465 S33: 0.0568 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8096 7.3491 3.7531 REMARK 3 T TENSOR REMARK 3 T11: 0.0393 T22: 0.0161 REMARK 3 T33: 0.0426 T12: 0.0161 REMARK 3 T13: -0.0087 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.4678 L22: 0.9080 REMARK 3 L33: 0.4379 L12: 0.1475 REMARK 3 L13: -0.1384 L23: 0.0136 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0503 S13: 0.0527 REMARK 3 S21: -0.0945 S22: 0.0081 S23: 0.1529 REMARK 3 S31: -0.0532 S32: -0.0956 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 460 A 623 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6367 -19.8197 -2.7354 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0195 REMARK 3 T33: 0.0450 T12: -0.0113 REMARK 3 T13: 0.0198 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.6597 L22: 0.3667 REMARK 3 L33: 0.6918 L12: -0.0228 REMARK 3 L13: 0.1431 L23: -0.0350 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: 0.0710 S13: -0.0166 REMARK 3 S21: -0.0327 S22: 0.0182 S23: 0.0208 REMARK 3 S31: 0.0805 S32: 0.0168 S33: 0.0231 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 624 A 890 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0182 -2.8045 15.3201 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0222 REMARK 3 T33: 0.0360 T12: 0.0059 REMARK 3 T13: -0.0099 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.2332 L22: 0.5515 REMARK 3 L33: 0.4421 L12: 0.0466 REMARK 3 L13: -0.0552 L23: 0.0512 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: -0.0279 S13: 0.0011 REMARK 3 S21: 0.0636 S22: 0.0186 S23: -0.0893 REMARK 3 S31: 0.0210 S32: 0.0594 S33: -0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-13 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 34.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10% (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS (PH 8.5), 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.82800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.19950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.34200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.19950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.82800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.34200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ARG A 228 CD NE CZ NH1 NH2 REMARK 470 LYS A 252 CD CE NZ REMARK 470 GLU A 267 CD OE1 OE2 REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 GLU A 409 CD OE1 OE2 REMARK 470 LYS A 480 CE NZ REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 ASN A 640 CG OD1 ND2 REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 665 CE NZ REMARK 470 GLU A 679 CG CD OE1 OE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 GLU A 699 CG CD OE1 OE2 REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 907 CE NZ REMARK 470 ASP A 940 CG OD1 OD2 REMARK 470 ARG A 969 CD NE CZ NH1 NH2 REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 GLU A 977 CD OE1 OE2 REMARK 470 LYS A 980 CD CE NZ REMARK 470 ASP A 989 CG OD1 OD2 REMARK 470 LYS A1019 CD CE NZ REMARK 470 LYS A1030 CE NZ REMARK 470 GLU A1041 CD OE1 OE2 REMARK 470 LYS A1048 CD CE NZ REMARK 470 GLN A1066 CD OE1 NE2 REMARK 470 ASN A1073 CG OD1 ND2 REMARK 470 LYS A1075 CE NZ REMARK 470 LYS A1084 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -45.64 -136.37 REMARK 500 LYS A 311 -112.63 54.76 REMARK 500 VAL A 459 -156.22 -127.42 REMARK 500 LEU A 475 -36.19 -135.02 REMARK 500 SER A 549 -64.23 -91.20 REMARK 500 ASN A 613 129.42 145.04 REMARK 500 GLN A 707 120.02 -37.02 REMARK 500 PHE A 736 72.27 55.77 REMARK 500 LYS A 988 -132.64 55.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 100.4 REMARK 620 3 GLU A 519 OE1 110.0 101.9 REMARK 620 4 HOH A1655 O 93.1 157.9 89.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 186 O REMARK 620 2 GLY A 250 O 80.4 REMARK 620 3 HOH A1385 O 101.2 158.4 REMARK 620 4 HOH A1520 O 167.5 89.5 85.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1085 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 86 O REMARK 620 2 HOH A1149 O 78.1 REMARK 620 3 HOH A1222 O 154.5 77.0 REMARK 620 4 HOH A1456 O 87.7 165.3 117.5 REMARK 620 5 HOH A1519 O 90.8 93.2 96.2 83.0 REMARK 620 6 HOH A1655 O 75.5 86.8 97.5 93.5 166.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1085 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBH RELATED DB: PDB REMARK 900 RELATED ID: 3EBI RELATED DB: PDB DBREF 3EBG A 196 1084 UNP O96935 AMP1_PLAFQ 196 1084 SEQADV 3EBG GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 3EBG GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 3EBG PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 3EBG GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 3EBG GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 3EBG GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 3EBG GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 889 PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SER GLY SEQRES 2 A 889 PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN ILE HIS SEQRES 3 A 889 ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP MET ASP SEQRES 4 A 889 ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL PHE ASP SEQRES 5 A 889 GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE ASN ASN SEQRES 6 A 889 LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR ASP ASN SEQRES 7 A 889 GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO LYS SER SEQRES 8 A 889 LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS PRO GLU SEQRES 9 A 889 THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER LYS ASN SEQRES 10 A 889 ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE ARG ARG SEQRES 11 A 889 ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET ALA LYS SEQRES 12 A 889 TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS TYR PRO SEQRES 13 A 889 VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU PHE GLU SEQRES 14 A 889 ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN ASP PRO SEQRES 15 A 889 PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL ALA GLY SEQRES 16 A 889 ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR LYS TYR SEQRES 17 A 889 THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER GLU GLU SEQRES 18 A 889 LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU CYS LEU SEQRES 19 A 889 LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE GLY LEU SEQRES 20 A 889 GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA VAL SER SEQRES 21 A 889 ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY LEU ASN SEQRES 22 A 889 ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS LYS ASN SEQRES 23 A 889 SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR VAL VAL SEQRES 24 A 889 GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN ARG VAL SEQRES 25 A 889 THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS GLU GLY SEQRES 26 A 889 LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU GLU MET SEQRES 27 A 889 THR LYS THR VAL THR THR ARG LEU SER HIS VAL ASP LEU SEQRES 28 A 889 LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER PRO LEU SEQRES 29 A 889 SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER MET GLU SEQRES 30 A 889 ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SER GLU SEQRES 31 A 889 VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU GLU TYR SEQRES 32 A 889 TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS ASN ASP SEQRES 33 A 889 GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR ALA MET SEQRES 34 A 889 GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SER ALA SEQRES 35 A 889 ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SER GLY SEQRES 36 A 889 THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP ALA GLU SEQRES 37 A 889 LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR THR LYS SEQRES 38 A 889 PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU PHE ILE SEQRES 39 A 889 PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN GLY LYS SEQRES 40 A 889 GLU MET ILE SER GLN THR THR LEU GLU LEU THR LYS GLU SEQRES 41 A 889 SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL LYS PRO SEQRES 42 A 889 ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO VAL TYR SEQRES 43 A 889 ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE LEU LEU SEQRES 44 A 889 LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR ASN SER SEQRES 45 A 889 CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET ASN TYR SEQRES 46 A 889 ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU GLU SER SEQRES 47 A 889 PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE ASP ALA SEQRES 48 A 889 ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP ALA GLY SEQRES 49 A 889 PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP ARG TYR SEQRES 50 A 889 ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP VAL LEU SEQRES 51 A 889 ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE GLY ASP SEQRES 52 A 889 LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SER LEU SEQRES 53 A 889 GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN ASP GLU SEQRES 54 A 889 SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG THR LEU SEQRES 55 A 889 ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA GLN TYR SEQRES 56 A 889 PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER LYS SER SEQRES 57 A 889 PRO TYR PRO SER ASN TRP LEU THR SER LEU SER VAL SER SEQRES 58 A 889 ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP LYS THR SEQRES 59 A 889 TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU GLN GLU SEQRES 60 A 889 TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS ASP ILE SEQRES 61 A 889 TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL LEU LYS SEQRES 62 A 889 ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL TYR LEU SEQRES 63 A 889 PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP ILE SER SEQRES 64 A 889 GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE THR LYS SEQRES 65 A 889 THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN LEU CYS SEQRES 66 A 889 GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR LYS ARG SEQRES 67 A 889 GLN GLU LEU MET LEU ASN GLU MET ASN THR MET LEU GLN SEQRES 68 A 889 GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR LEU LEU SEQRES 69 A 889 ARG LEU THR ASN LYS HET ZN A 1 1 HET MG A1085 1 HET MG A 2 1 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 5 6 HET GOL A 6 6 HET GOL A 7 6 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 MG 2(MG 2+) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *762(H2 O) HELIX 1 1 LEU A 422 PHE A 440 1 19 HELIX 2 2 ASP A 484 HIS A 500 1 17 HELIX 3 3 LEU A 515 THR A 534 1 20 HELIX 4 4 VAL A 537 SER A 556 1 20 HELIX 5 5 THR A 577 LEU A 594 1 18 HELIX 6 6 GLU A 596 ASN A 610 1 15 HELIX 7 7 CYS A 617 LYS A 632 1 16 HELIX 8 9 ASP A 748 TYR A 757 1 10 HELIX 9 10 ALA A 761 GLU A 789 1 29 HELIX 10 11 ALA A 801 GLU A 812 1 12 HELIX 11 12 ALA A 818 VAL A 825 1 8 HELIX 12 13 ASP A 830 ILE A 833 1 4 HELIX 13 14 THR A 842 ASP A 876 1 35 HELIX 14 15 PHE A 889 ALA A 908 1 20 HELIX 15 16 ILE A 913 SER A 921 1 9 HELIX 16 17 PRO A 926 ALA A 937 1 12 HELIX 17 18 LYS A 941 LYS A 954 1 14 HELIX 18 19 GLU A 957 ARG A 969 1 13 HELIX 19 20 ASP A 974 VAL A 986 1 13 HELIX 20 21 PRO A 993 ASN A 1005 1 13 HELIX 21 22 LEU A 1007 HIS A 1011 1 5 HELIX 22 23 LYS A 1016 LYS A 1030 1 15 HELIX 23 24 PRO A 1033 LEU A 1039 1 7 HELIX 24 25 THR A 1051 GLN A 1066 1 16 HELIX 25 26 ASN A 1072 THR A 1082 1 11 SHEET 1 2 1 PHE A 209 HIS A 221 0 SHEET 1 3 1 GLU A 224 ILE A 235 0 SHEET 1 4 1 LEU A 244 ASP A 247 0 SHEET 1 5 1 LYS A 252 ILE A 258 0 SHEET 1 7 1 TYR A 269 TYR A 271 0 SHEET 1 8 1 PHE A 275 ILE A 278 0 SHEET 1 9 1 PHE A 288 ILE A 296 0 SHEET 1 10 1 GLY A 306 SER A 310 0 SHEET 1 11 1 ILE A 313 GLN A 317 0 SHEET 1 12 1 ALA A 337 ASP A 346 0 SHEET 1 13 1 VAL A 352 SER A 355 0 SHEET 1 14 1 ASP A 358 ILE A 365 0 SHEET 1 15 1 ARG A 369 LYS A 380 0 SHEET 1 16 1 VAL A 387 GLY A 390 0 SHEET 1 17 1 LYS A 393 ILE A 400 0 SHEET 1 18 1 LYS A 407 SER A 414 0 SHEET 1 19 1 ARG A 448 VAL A 454 0 SHEET 1 21 1 LEU A 467 ASN A 471 0 SHEET 1 25 1 PRO A 652 ASP A 661 0 SHEET 1 26 1 GLN A 666 THR A 675 0 SHEET 1 27 1 ILE A 689 ILE A 696 0 SHEET 1 28 1 THR A 708 LEU A 712 0 SHEET 1 29 1 SER A 716 PHE A 721 0 SHEET 1 30 1 ILE A 729 LEU A 732 0 SHEET 1 31 1 TYR A 741 GLU A 743 0 LINK ZN ZN A 1 NE2 HIS A 496 1555 1555 2.05 LINK ZN ZN A 1 NE2 HIS A 500 1555 1555 2.00 LINK ZN ZN A 1 OE1 GLU A 519 1555 1555 2.07 LINK ZN ZN A 1 O HOH A1655 1555 1555 1.92 LINK MG MG A 2 O HOH A 186 1555 1555 2.07 LINK MG MG A 2 O GLY A 250 1555 1555 2.23 LINK MG MG A 2 O HOH A1385 1555 1555 2.46 LINK MG MG A 2 O HOH A1520 1555 1555 2.25 LINK O HOH A 86 MG MG A1085 1555 1555 2.26 LINK MG MG A1085 O HOH A1149 1555 1555 2.09 LINK MG MG A1085 O HOH A1222 1555 1555 2.28 LINK MG MG A1085 O HOH A1456 1555 1555 2.11 LINK MG MG A1085 O HOH A1519 1555 1555 2.19 LINK MG MG A1085 O HOH A1655 1555 1555 2.18 CISPEP 1 GLU A 319 ALA A 320 0 1.75 CISPEP 2 GLY A 612 ASN A 613 0 -14.87 SITE 1 AC1 6 HOH A 86 HIS A 496 HIS A 500 GLU A 519 SITE 2 AC1 6 MG A1085 HOH A1655 SITE 1 AC2 8 ZN A 1 HOH A 86 TYR A 580 HOH A1149 SITE 2 AC2 8 HOH A1222 HOH A1456 HOH A1519 HOH A1655 SITE 1 AC3 6 HOH A 83 HOH A 186 GLY A 250 HOH A1385 SITE 2 AC3 6 HOH A1445 HOH A1520 SITE 1 AC4 10 HOH A 82 HOH A 119 LYS A 479 TYR A 880 SITE 2 AC4 10 PHE A 881 VAL A 887 ASP A 888 GLN A 891 SITE 3 AC4 10 ARG A 895 TYR A 925 SITE 1 AC5 9 HOH A 46 VAL A 459 GLY A 460 ASN A 471 SITE 2 AC5 9 ASN A 473 SER A 474 ARG A 489 ARG A 997 SITE 3 AC5 9 HOH A1628 SITE 1 AC6 7 HOH A 144 HIS A 653 LYS A 676 TYR A 741 SITE 2 AC6 7 ASN A 835 HOH A1603 HOH A1621 SITE 1 AC7 3 THR A 577 TYR A 580 ASP A 581 SITE 1 AC8 6 GLU A 957 ASN A 992 ASP A 995 HOH A1278 SITE 2 AC8 6 HOH A1370 HOH A1411 CRYST1 75.656 108.684 118.399 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013218 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008446 0.00000