HEADER HYDROLASE INHIBITOR 27-AUG-08 3EBH TITLE STRUCTURE OF THE M1 ALANYLAMINOPEPTIDASE FROM MALARIA COMPLEXED WITH TITLE 2 BESTATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PFA-M1; COMPND 5 EC: 3.4.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 STRAIN: D10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRCHIS2B KEYWDS HYDROLASE, AMINOPEPTIDASE, METAL-BINDING, METALLOPROTEASE, PROTEASE, KEYWDS 2 HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR S.MCGOWAN,C.J.PORTER,A.M.BUCKLE,J.C.WHISSTOCK REVDAT 7 21-FEB-24 3EBH 1 REMARK REVDAT 6 20-OCT-21 3EBH 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 3EBH 1 VERSN REVDAT 4 29-DEC-09 3EBH 1 REMARK REVDAT 3 17-MAR-09 3EBH 1 JRNL REVDAT 2 17-FEB-09 3EBH 1 JRNL REVDAT 1 27-JAN-09 3EBH 0 JRNL AUTH S.MCGOWAN,C.J.PORTER,J.LOWTHER,C.M.STACK,S.J.GOLDING, JRNL AUTH 2 T.S.SKINNER-ADAMS,K.R.TRENHOLME,F.TEUSCHER,S.M.DONNELLY, JRNL AUTH 3 J.GREMBECKA,A.MUCHA,P.KAFARSKI,R.DEGORI,A.M.BUCKLE, JRNL AUTH 4 D.L.GARDINER,J.C.WHISSTOCK,J.P.DALTON JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF THE ESSENTIAL JRNL TITL 2 PLASMODIUM FALCIPARUM M1 NEUTRAL AMINOPEPTIDASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2537 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196988 JRNL DOI 10.1073/PNAS.0807398106 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 3 NUMBER OF REFLECTIONS : 90285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5477 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 876 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7521 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10169 ; 0.973 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 898 ; 5.303 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 367 ;34.314 ;25.041 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1365 ;11.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1118 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5646 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3710 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5237 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 655 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.036 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4601 ; 0.901 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7266 ; 1.476 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3320 ; 2.519 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2898 ; 3.826 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 888 1 REMARK 3 1 B 2 B 888 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 7212 ; 0.010 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 7212 ; 0.110 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120212 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 27.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 8.6730 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : 0.36900 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10% (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS (PH 8.5), 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DRO, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.82550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.98200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.31400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.98200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.82550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.31400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 LYS A 405 CE NZ REMARK 470 ARG A 969 CD NE CZ NH1 NH2 REMARK 470 GLU A1055 CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 252 CD CE NZ REMARK 480 LYS A 608 CD CE NZ REMARK 480 HIS A 670 CA CB CG ND1 CD2 CE1 NE2 REMARK 480 ASP A 890 CA CB CG OD1 OD2 REMARK 480 LYS A 1019 CD CE NZ REMARK 480 LYS A 1075 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -44.53 -134.58 REMARK 500 LYS A 311 -107.97 51.76 REMARK 500 VAL A 459 -152.07 -125.11 REMARK 500 GLU A 463 34.80 -87.30 REMARK 500 LEU A 475 -33.11 -135.60 REMARK 500 SER A 549 -71.97 -90.50 REMARK 500 PHE A 736 72.48 55.73 REMARK 500 VAL A 986 -57.12 -125.27 REMARK 500 LYS A 988 -137.43 53.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 101.8 REMARK 620 3 GLU A 519 OE1 105.5 102.3 REMARK 620 4 BES A1085 O2 111.4 94.9 134.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 7 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 26 O REMARK 620 2 GLY A 250 O 167.2 REMARK 620 3 HOH A1099 O 91.1 96.9 REMARK 620 4 HOH A1212 O 85.2 84.9 89.5 REMARK 620 5 HOH A1520 O 101.9 88.7 85.6 171.4 REMARK 620 6 HOH A1521 O 87.9 84.4 177.7 92.4 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 8 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1176 O REMARK 620 2 HOH A1523 O 82.5 REMARK 620 3 HOH A1524 O 158.0 87.9 REMARK 620 4 HOH A1525 O 84.5 99.2 77.5 REMARK 620 5 HOH A1526 O 110.5 166.9 79.6 81.6 REMARK 620 6 HOH A1527 O 90.6 85.4 108.4 172.7 95.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 9 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1541 O REMARK 620 2 HOH A1542 O 95.5 REMARK 620 3 HOH A1543 O 95.5 168.3 REMARK 620 4 HOH A1544 O 96.3 92.1 90.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 10 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 100 O REMARK 620 2 HOH A 103 O 95.8 REMARK 620 3 HOH A1461 O 98.7 98.7 REMARK 620 4 HOH A1566 O 157.3 95.2 99.1 REMARK 620 5 HOH A1567 O 82.9 178.6 81.2 86.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BES A1085 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1086 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 10 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBG RELATED DB: PDB REMARK 900 RELATED ID: 3EBI RELATED DB: PDB DBREF 3EBH A 196 1084 UNP O96935 AMP1_PLAFQ 196 1084 SEQADV 3EBH GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 3EBH GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 3EBH PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 3EBH GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 3EBH GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 3EBH GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 3EBH GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 889 PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SER GLY SEQRES 2 A 889 PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN ILE HIS SEQRES 3 A 889 ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP MET ASP SEQRES 4 A 889 ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL PHE ASP SEQRES 5 A 889 GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE ASN ASN SEQRES 6 A 889 LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR ASP ASN SEQRES 7 A 889 GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO LYS SER SEQRES 8 A 889 LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS PRO GLU SEQRES 9 A 889 THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER LYS ASN SEQRES 10 A 889 ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE ARG ARG SEQRES 11 A 889 ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET ALA LYS SEQRES 12 A 889 TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS TYR PRO SEQRES 13 A 889 VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU PHE GLU SEQRES 14 A 889 ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN ASP PRO SEQRES 15 A 889 PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL ALA GLY SEQRES 16 A 889 ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR LYS TYR SEQRES 17 A 889 THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER GLU GLU SEQRES 18 A 889 LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU CYS LEU SEQRES 19 A 889 LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE GLY LEU SEQRES 20 A 889 GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA VAL SER SEQRES 21 A 889 ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY LEU ASN SEQRES 22 A 889 ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS LYS ASN SEQRES 23 A 889 SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR VAL VAL SEQRES 24 A 889 GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN ARG VAL SEQRES 25 A 889 THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS GLU GLY SEQRES 26 A 889 LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU GLU MET SEQRES 27 A 889 THR LYS THR VAL THR THR ARG LEU SER HIS VAL ASP LEU SEQRES 28 A 889 LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER PRO LEU SEQRES 29 A 889 SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER MET GLU SEQRES 30 A 889 ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SER GLU SEQRES 31 A 889 VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU GLU TYR SEQRES 32 A 889 TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS ASN ASP SEQRES 33 A 889 GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR ALA MET SEQRES 34 A 889 GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SER ALA SEQRES 35 A 889 ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SER GLY SEQRES 36 A 889 THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP ALA GLU SEQRES 37 A 889 LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR THR LYS SEQRES 38 A 889 PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU PHE ILE SEQRES 39 A 889 PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN GLY LYS SEQRES 40 A 889 GLU MET ILE SER GLN THR THR LEU GLU LEU THR LYS GLU SEQRES 41 A 889 SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL LYS PRO SEQRES 42 A 889 ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO VAL TYR SEQRES 43 A 889 ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE LEU LEU SEQRES 44 A 889 LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR ASN SER SEQRES 45 A 889 CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET ASN TYR SEQRES 46 A 889 ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU GLU SER SEQRES 47 A 889 PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE ASP ALA SEQRES 48 A 889 ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP ALA GLY SEQRES 49 A 889 PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP ARG TYR SEQRES 50 A 889 ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP VAL LEU SEQRES 51 A 889 ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE GLY ASP SEQRES 52 A 889 LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SER LEU SEQRES 53 A 889 GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN ASP GLU SEQRES 54 A 889 SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG THR LEU SEQRES 55 A 889 ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA GLN TYR SEQRES 56 A 889 PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER LYS SER SEQRES 57 A 889 PRO TYR PRO SER ASN TRP LEU THR SER LEU SER VAL SER SEQRES 58 A 889 ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP LYS THR SEQRES 59 A 889 TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU GLN GLU SEQRES 60 A 889 TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS ASP ILE SEQRES 61 A 889 TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL LEU LYS SEQRES 62 A 889 ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL TYR LEU SEQRES 63 A 889 PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP ILE SER SEQRES 64 A 889 GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE THR LYS SEQRES 65 A 889 THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN LEU CYS SEQRES 66 A 889 GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR LYS ARG SEQRES 67 A 889 GLN GLU LEU MET LEU ASN GLU MET ASN THR MET LEU GLN SEQRES 68 A 889 GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR LEU LEU SEQRES 69 A 889 ARG LEU THR ASN LYS HET ZN A 1 1 HET BES A1085 22 HET GOL A1086 6 HET GOL A 2 6 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 5 6 HET GOL A 6 6 HET MG A 7 1 HET MG A 8 1 HET MG A 9 1 HET MG A 10 1 HETNAM ZN ZINC ION HETNAM BES 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL- HETNAM 2 BES PENTANOIC ACID HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN BES BESTATIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 BES C16 H24 N2 O4 FORMUL 4 GOL 6(C3 H8 O3) FORMUL 10 MG 4(MG 2+) FORMUL 14 HOH *876(H2 O) HELIX 1 1 LEU A 422 PHE A 440 1 19 HELIX 2 2 ASP A 484 HIS A 500 1 17 HELIX 3 3 LEU A 515 THR A 534 1 20 HELIX 4 4 VAL A 537 SER A 556 1 20 HELIX 5 5 THR A 577 LEU A 594 1 18 HELIX 6 6 GLU A 596 ASP A 611 1 16 HELIX 7 7 CYS A 617 LYS A 632 1 16 HELIX 8 9 ASP A 748 TYR A 757 1 10 HELIX 9 10 ALA A 761 GLU A 789 1 29 HELIX 10 11 ALA A 801 GLU A 812 1 12 HELIX 11 12 ALA A 818 VAL A 825 1 8 HELIX 12 13 ASP A 830 ILE A 833 1 4 HELIX 13 14 THR A 842 ASP A 876 1 35 HELIX 14 15 PHE A 889 ALA A 908 1 20 HELIX 15 16 ILE A 913 SER A 921 1 9 HELIX 16 17 PRO A 926 SER A 936 1 11 HELIX 17 18 LYS A 941 LYS A 954 1 14 HELIX 18 19 GLU A 957 ARG A 969 1 13 HELIX 19 20 ASP A 974 VAL A 986 1 13 HELIX 20 21 PRO A 993 ASN A 1005 1 13 HELIX 21 22 LEU A 1007 HIS A 1011 1 5 HELIX 22 23 LYS A 1016 LYS A 1030 1 15 HELIX 23 24 PRO A 1033 CYS A 1040 1 8 HELIX 24 25 THR A 1051 GLN A 1066 1 16 HELIX 25 26 ASN A 1072 THR A 1082 1 11 SHEET 1 2 1 PHE A 209 HIS A 221 0 SHEET 1 3 1 GLU A 224 ILE A 235 0 SHEET 1 4 1 LEU A 244 ASP A 247 0 SHEET 1 5 1 LYS A 252 ILE A 258 0 SHEET 1 7 1 TYR A 269 TYR A 271 0 SHEET 1 8 1 PHE A 275 ILE A 278 0 SHEET 1 9 1 PHE A 288 ILE A 296 0 SHEET 1 10 1 GLY A 306 SER A 310 0 SHEET 1 11 1 ILE A 313 GLN A 317 0 SHEET 1 12 1 ALA A 337 ASP A 346 0 SHEET 1 13 1 VAL A 352 SER A 355 0 SHEET 1 14 1 ASP A 358 ILE A 365 0 SHEET 1 15 1 ARG A 369 LYS A 380 0 SHEET 1 16 1 VAL A 387 GLY A 390 0 SHEET 1 17 1 LEU A 392 ILE A 400 0 SHEET 1 18 1 LYS A 407 GLU A 415 0 SHEET 1 19 1 ARG A 448 VAL A 454 0 SHEET 1 21 1 LEU A 467 ASN A 471 0 SHEET 1 25 1 PRO A 652 ASP A 661 0 SHEET 1 26 1 GLN A 666 THR A 675 0 SHEET 1 27 1 ILE A 689 ASN A 697 0 SHEET 1 29 1 THR A 708 LEU A 712 0 SHEET 1 30 1 SER A 716 PHE A 721 0 SHEET 1 31 1 ILE A 729 SER A 731 0 SHEET 1 32 1 TYR A 741 GLU A 743 0 LINK ZN ZN A 1 NE2 HIS A 496 1555 1555 2.02 LINK ZN ZN A 1 NE2 HIS A 500 1555 1555 2.04 LINK ZN ZN A 1 OE1 GLU A 519 1555 1555 2.02 LINK ZN ZN A 1 O2 BES A1085 1555 1555 2.06 LINK MG MG A 7 O HOH A 26 1555 1555 2.02 LINK MG MG A 7 O GLY A 250 1555 1555 2.06 LINK MG MG A 7 O HOH A1099 1555 1555 2.14 LINK MG MG A 7 O HOH A1212 1555 1555 2.21 LINK MG MG A 7 O HOH A1520 1555 1555 2.10 LINK MG MG A 7 O HOH A1521 1555 1555 2.14 LINK MG MG A 8 O HOH A1176 1555 1555 2.16 LINK MG MG A 8 O HOH A1523 1555 1555 1.91 LINK MG MG A 8 O HOH A1524 1555 1555 2.17 LINK MG MG A 8 O HOH A1525 1555 1555 2.23 LINK MG MG A 8 O HOH A1526 1555 1555 2.23 LINK MG MG A 8 O HOH A1527 1555 1555 2.11 LINK MG MG A 9 O HOH A1541 1555 1555 1.87 LINK MG MG A 9 O HOH A1542 1555 1555 2.15 LINK MG MG A 9 O HOH A1543 1555 1555 2.09 LINK MG MG A 9 O HOH A1544 1555 1555 2.13 LINK MG MG A 10 O HOH A 100 1555 1555 2.46 LINK MG MG A 10 O HOH A 103 1555 1555 2.01 LINK MG MG A 10 O HOH A1461 1555 1555 2.00 LINK MG MG A 10 O HOH A1566 1555 1555 2.07 LINK MG MG A 10 O HOH A1567 1555 1555 2.21 CISPEP 1 GLU A 319 ALA A 320 0 -2.06 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 BES A1085 SITE 1 AC2 15 ZN A 1 GOL A 6 GLU A 319 VAL A 459 SITE 2 AC2 15 GLY A 460 ALA A 461 GLU A 463 HIS A 496 SITE 3 AC2 15 GLU A 497 HIS A 500 LYS A 518 GLU A 519 SITE 4 AC2 15 TYR A 575 TYR A 580 HOH A1604 SITE 1 AC3 10 HOH A 19 LYS A 479 TYR A 880 HIS A 886 SITE 2 AC3 10 VAL A 887 ASP A 888 GLN A 891 ARG A 895 SITE 3 AC3 10 TYR A 925 HOH A1500 SITE 1 AC4 9 TYR A 765 CYS A 768 THR A 769 TYR A 772 SITE 2 AC4 9 TYR A 823 SER A 826 PRO A 828 HOH A1489 SITE 3 AC4 9 HOH A1668 SITE 1 AC5 7 HOH A 105 HIS A 653 LYS A 676 TYR A 741 SITE 2 AC5 7 ASN A 835 PHE A 836 HOH A1661 SITE 1 AC6 10 HOH A 62 VAL A 459 GLY A 460 ASN A 471 SITE 2 AC6 10 ASN A 473 SER A 474 ARG A 489 ASN A 994 SITE 3 AC6 10 ARG A 997 HOH A1604 SITE 1 AC7 8 ILE A 483 THR A 931 SER A 934 THR A 966 SITE 2 AC7 8 HOH A1116 HOH A1153 HOH A1363 HOH A1584 SITE 1 AC8 5 TYR A 575 TYR A 580 BES A1085 HOH A1198 SITE 2 AC8 5 HOH A1648 SITE 1 AC9 6 HOH A 26 GLY A 250 HOH A1099 HOH A1212 SITE 2 AC9 6 HOH A1520 HOH A1521 SITE 1 BC1 6 HOH A1176 HOH A1523 HOH A1524 HOH A1525 SITE 2 BC1 6 HOH A1526 HOH A1527 SITE 1 BC2 5 GLU A 957 HOH A1541 HOH A1542 HOH A1543 SITE 2 BC2 5 HOH A1544 SITE 1 BC3 5 HOH A 100 HOH A 103 HOH A1461 HOH A1566 SITE 2 BC3 5 HOH A1567 CRYST1 75.651 108.628 117.964 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008477 0.00000