HEADER HYDROLASE INHIBITOR 27-AUG-08 3EBI TITLE STRUCTURE OF THE M1 ALANYLAMINOPEPTIDASE FROM MALARIA COMPLEXED WITH TITLE 2 THE PHOSPHINATE DIPEPTIDE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 195 TO 1084; COMPND 5 SYNONYM: PFA-M1; COMPND 6 EC: 3.4.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 186763; SOURCE 4 STRAIN: D10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRCHIS2B KEYWDS HYDROLASE, AMINOPEPTIDASE, METAL-BINDING, METALLOPROTEASE, PROTEASE, KEYWDS 2 HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR S.MCGOWAN,C.J.PORTER,A.M.BUCKLE,J.C.WHISSTOCK REVDAT 7 21-FEB-24 3EBI 1 REMARK REVDAT 6 20-OCT-21 3EBI 1 REMARK SEQADV SHEET LINK REVDAT 5 13-JUL-11 3EBI 1 VERSN REVDAT 4 29-DEC-09 3EBI 1 REMARK REVDAT 3 17-MAR-09 3EBI 1 JRNL REVDAT 2 17-FEB-09 3EBI 1 JRNL REVDAT 1 27-JAN-09 3EBI 0 JRNL AUTH S.MCGOWAN,C.J.PORTER,J.LOWTHER,C.M.STACK,S.J.GOLDING, JRNL AUTH 2 T.S.SKINNER-ADAMS,K.R.TRENHOLME,F.TEUSCHER,S.M.DONNELLY, JRNL AUTH 3 J.GREMBECKA,A.MUCHA,P.KAFARSKI,R.DEGORI,A.M.BUCKLE, JRNL AUTH 4 D.L.GARDINER,J.C.WHISSTOCK,J.P.DALTON JRNL TITL STRUCTURAL BASIS FOR THE INHIBITION OF THE ESSENTIAL JRNL TITL 2 PLASMODIUM FALCIPARUM M1 NEUTRAL AMINOPEPTIDASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2537 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196988 JRNL DOI 10.1073/PNAS.0807398106 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 57395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3078 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3439 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7291 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.24000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 2.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7520 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10163 ; 1.331 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 894 ; 5.904 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 367 ;34.702 ;24.932 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1370 ;13.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.607 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1113 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5642 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3555 ; 0.177 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5156 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 562 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.093 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4641 ; 1.201 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7255 ; 1.794 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3326 ; 3.140 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2905 ; 4.412 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 416 2 REMARK 3 1 B 4 B 416 2 REMARK 3 2 A 421 A 435 2 REMARK 3 2 B 421 B 435 2 REMARK 3 3 A 447 A 888 2 REMARK 3 3 B 447 B 888 2 REMARK 3 4 A 417 A 420 6 REMARK 3 4 B 417 B 420 6 REMARK 3 5 A 436 A 446 6 REMARK 3 5 B 436 B 446 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3473 ; 0.020 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 3574 ; 0.190 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 96 ; 0.380 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 3473 ; 0.110 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3574 ; 0.720 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 96 ; 1.770 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57395 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 108.605 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 8.6730 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : 0.36900 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10% (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS (PH 8.5), 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.92600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.16250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.31650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.16250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.92600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.31650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CE NZ REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 GLU A1055 CD OE1 OE2 REMARK 470 LYS A1084 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 252 CD CE NZ REMARK 480 SER A 584 CA CB OG REMARK 480 HIS A 670 CA CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 1019 CD CE NZ REMARK 480 LYS A 1075 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 265 O HOH A 1596 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -43.75 -131.02 REMARK 500 SER A 286 -164.32 -128.47 REMARK 500 LYS A 311 -105.89 55.00 REMARK 500 VAL A 459 -158.08 -125.28 REMARK 500 ALA A 461 -179.85 -170.48 REMARK 500 GLU A 463 36.66 -84.62 REMARK 500 LEU A 475 -34.87 -135.56 REMARK 500 PHE A 736 70.61 53.86 REMARK 500 VAL A 986 -57.74 -130.19 REMARK 500 LYS A 988 -127.00 50.73 REMARK 500 ASN A1006 94.33 -67.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 105.8 REMARK 620 3 GLU A 519 OE1 112.0 96.7 REMARK 620 4 BEY A1085 O3 102.1 140.3 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 7 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 26 O REMARK 620 2 GLY A 250 O 174.3 REMARK 620 3 HOH A1099 O 93.2 90.7 REMARK 620 4 HOH A1214 O 94.1 90.0 90.4 REMARK 620 5 HOH A1536 O 95.9 79.5 165.6 100.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 8 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1177 O REMARK 620 2 HOH A1537 O 80.3 REMARK 620 3 HOH A1539 O 83.7 104.7 REMARK 620 4 HOH A1540 O 88.7 78.6 171.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 10 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 103 O REMARK 620 2 HOH A1473 O 100.8 REMARK 620 3 HOH A1542 O 80.5 96.4 REMARK 620 4 HOH A1543 O 158.3 91.0 80.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEY A1085 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1086 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBG RELATED DB: PDB REMARK 900 RELATED ID: 3EBH RELATED DB: PDB DBREF 3EBI A 195 1084 UNP O96935 AMP1_PLAFQ 195 1084 SEQADV 3EBI GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 3EBI GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 3EBI PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 3EBI GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 3EBI GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 3EBI GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 3EBI GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 890 GLU PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SER SEQRES 2 A 890 GLY PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN ILE SEQRES 3 A 890 HIS ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP MET SEQRES 4 A 890 ASP ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL PHE SEQRES 5 A 890 ASP GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE ASN SEQRES 6 A 890 ASN LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR ASP SEQRES 7 A 890 ASN GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO LYS SEQRES 8 A 890 SER LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS PRO SEQRES 9 A 890 GLU THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER LYS SEQRES 10 A 890 ASN ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE ARG SEQRES 11 A 890 ARG ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET ALA SEQRES 12 A 890 LYS TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS TYR SEQRES 13 A 890 PRO VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU PHE SEQRES 14 A 890 GLU ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN ASP SEQRES 15 A 890 PRO PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL ALA SEQRES 16 A 890 GLY ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR LYS SEQRES 17 A 890 TYR THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER GLU SEQRES 18 A 890 GLU LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU CYS SEQRES 19 A 890 LEU LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE GLY SEQRES 20 A 890 LEU GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA VAL SEQRES 21 A 890 SER ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY LEU SEQRES 22 A 890 ASN ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS LYS SEQRES 23 A 890 ASN SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR VAL SEQRES 24 A 890 VAL GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN ARG SEQRES 25 A 890 VAL THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS GLU SEQRES 26 A 890 GLY LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU GLU SEQRES 27 A 890 MET THR LYS THR VAL THR THR ARG LEU SER HIS VAL ASP SEQRES 28 A 890 LEU LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER PRO SEQRES 29 A 890 LEU SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER MET SEQRES 30 A 890 GLU ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SER SEQRES 31 A 890 GLU VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU GLU SEQRES 32 A 890 TYR TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS ASN SEQRES 33 A 890 ASP GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR ALA SEQRES 34 A 890 MET GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SER SEQRES 35 A 890 ALA ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SER SEQRES 36 A 890 GLY THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP ALA SEQRES 37 A 890 GLU LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR THR SEQRES 38 A 890 LYS PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU PHE SEQRES 39 A 890 ILE PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN GLY SEQRES 40 A 890 LYS GLU MET ILE SER GLN THR THR LEU GLU LEU THR LYS SEQRES 41 A 890 GLU SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL LYS SEQRES 42 A 890 PRO ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO VAL SEQRES 43 A 890 TYR ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE LEU SEQRES 44 A 890 LEU LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR ASN SEQRES 45 A 890 SER CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET ASN SEQRES 46 A 890 TYR ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU GLU SEQRES 47 A 890 SER PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE ASP SEQRES 48 A 890 ALA ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP ALA SEQRES 49 A 890 GLY PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP ARG SEQRES 50 A 890 TYR ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP VAL SEQRES 51 A 890 LEU ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE GLY SEQRES 52 A 890 ASP LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SER SEQRES 53 A 890 LEU GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN ASP SEQRES 54 A 890 GLU SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG THR SEQRES 55 A 890 LEU ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA GLN SEQRES 56 A 890 TYR PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER LYS SEQRES 57 A 890 SER PRO TYR PRO SER ASN TRP LEU THR SER LEU SER VAL SEQRES 58 A 890 SER ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP LYS SEQRES 59 A 890 THR TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU GLN SEQRES 60 A 890 GLU TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS ASP SEQRES 61 A 890 ILE TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL LEU SEQRES 62 A 890 LYS ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL TYR SEQRES 63 A 890 LEU PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP ILE SEQRES 64 A 890 SER GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE THR SEQRES 65 A 890 LYS THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN LEU SEQRES 66 A 890 CYS GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR LYS SEQRES 67 A 890 ARG GLN GLU LEU MET LEU ASN GLU MET ASN THR MET LEU SEQRES 68 A 890 GLN GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR LEU SEQRES 69 A 890 LEU ARG LEU THR ASN LYS HET ZN A 1 1 HET BEY A1085 25 HET GOL A1086 6 HET MG A 10 1 HET GOL A 2 6 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 5 6 HET MG A 7 1 HET MG A 8 1 HET MG A 9 1 HETNAM ZN ZINC ION HETNAM BEY (2S)-3-[(R)-[(1S)-1-AMINO-3-PHENYLPROPYL](HYDROXY) HETNAM 2 BEY PHOSPHORYL]-2-BENZYLPROPANOIC ACID HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 BEY C19 H24 N O4 P FORMUL 4 GOL 5(C3 H8 O3) FORMUL 5 MG 4(MG 2+) FORMUL 13 HOH *740(H2 O) HELIX 1 1 LEU A 422 PHE A 440 1 19 HELIX 2 2 ASP A 484 GLN A 501 1 18 HELIX 3 3 LEU A 515 THR A 534 1 20 HELIX 4 4 VAL A 537 SER A 556 1 20 HELIX 5 5 THR A 577 LEU A 594 1 18 HELIX 6 6 GLU A 596 ASP A 611 1 16 HELIX 7 7 CYS A 617 LYS A 632 1 16 HELIX 8 9 ASP A 748 TYR A 757 1 10 HELIX 9 10 ALA A 761 GLU A 789 1 29 HELIX 10 11 ALA A 801 GLU A 812 1 12 HELIX 11 12 ALA A 818 VAL A 825 1 8 HELIX 12 13 ASP A 830 ILE A 834 1 5 HELIX 13 14 THR A 842 ASP A 876 1 35 HELIX 14 15 PHE A 889 ALA A 908 1 20 HELIX 15 16 ILE A 913 SER A 921 1 9 HELIX 16 17 PRO A 926 ALA A 937 1 12 HELIX 17 18 LYS A 941 LYS A 954 1 14 HELIX 18 19 GLU A 957 ARG A 969 1 13 HELIX 19 20 ASP A 974 VAL A 986 1 13 HELIX 20 21 PRO A 993 LEU A 1001 1 9 HELIX 21 22 LEU A 1007 HIS A 1011 1 5 HELIX 22 23 LYS A 1016 LYS A 1030 1 15 HELIX 23 24 PRO A 1033 CYS A 1040 1 8 HELIX 24 25 THR A 1051 GLN A 1066 1 16 HELIX 25 26 ASN A 1072 THR A 1082 1 11 SHEET 1 2 1 PHE A 209 ILE A 220 0 SHEET 1 3 1 THR A 225 ILE A 235 0 SHEET 1 4 1 LEU A 244 ASP A 247 0 SHEET 1 5 1 LYS A 252 ILE A 258 0 SHEET 1 7 1 TYR A 269 TYR A 271 0 SHEET 1 8 1 PHE A 275 ILE A 278 0 SHEET 1 9 1 PHE A 288 ILE A 296 0 SHEET 1 10 1 GLY A 306 SER A 310 0 SHEET 1 11 1 ILE A 313 GLN A 317 0 SHEET 1 12 1 ALA A 337 ASP A 346 0 SHEET 1 13 1 VAL A 352 SER A 355 0 SHEET 1 14 1 ASP A 358 ILE A 365 0 SHEET 1 15 1 ARG A 369 LYS A 380 0 SHEET 1 16 1 VAL A 387 GLY A 390 0 SHEET 1 17 1 LEU A 392 ILE A 400 0 SHEET 1 18 1 LYS A 407 GLU A 415 0 SHEET 1 19 1 ARG A 448 VAL A 454 0 SHEET 1 21 1 LEU A 467 ASN A 471 0 SHEET 1 25 1 PRO A 652 ASP A 661 0 SHEET 1 26 1 GLN A 666 THR A 675 0 SHEET 1 27 1 ILE A 689 ASN A 697 0 SHEET 1 29 1 THR A 708 LEU A 712 0 SHEET 1 30 1 SER A 716 PHE A 721 0 SHEET 1 31 1 ILE A 729 SER A 731 0 SHEET 1 32 1 TYR A 741 GLU A 743 0 LINK ZN ZN A 1 NE2 HIS A 496 1555 1555 2.05 LINK ZN ZN A 1 NE2 HIS A 500 1555 1555 2.05 LINK ZN ZN A 1 OE1 GLU A 519 1555 1555 2.09 LINK ZN ZN A 1 O3 BEY A1085 1555 1555 1.86 LINK MG MG A 7 O HOH A 26 1555 1555 2.15 LINK MG MG A 7 O GLY A 250 1555 1555 2.27 LINK MG MG A 7 O HOH A1099 1555 1555 2.36 LINK MG MG A 7 O HOH A1214 1555 1555 2.18 LINK MG MG A 7 O HOH A1536 1555 1555 2.15 LINK MG MG A 8 O HOH A1177 1555 1555 2.17 LINK MG MG A 8 O HOH A1537 1555 1555 2.20 LINK MG MG A 8 O HOH A1539 1555 1555 2.06 LINK MG MG A 8 O HOH A1540 1555 1555 2.18 LINK MG MG A 9 O HOH A1541 1555 1555 1.98 LINK MG MG A 10 O HOH A 103 1555 1555 2.39 LINK MG MG A 10 O HOH A1473 1555 1555 1.87 LINK MG MG A 10 O HOH A1542 1555 1555 2.19 LINK MG MG A 10 O HOH A1543 1555 1555 2.04 CISPEP 1 GLU A 319 ALA A 320 0 -6.05 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 BEY A1085 SITE 1 AC2 19 ZN A 1 GLN A 317 GLU A 319 VAL A 459 SITE 2 AC2 19 GLY A 460 ALA A 461 MET A 462 GLU A 463 SITE 3 AC2 19 ARG A 489 VAL A 493 HIS A 496 GLU A 497 SITE 4 AC2 19 HIS A 500 GLU A 519 TYR A 575 TYR A 580 SITE 5 AC2 19 MET A1034 HOH A1544 HOH A1545 SITE 1 AC3 11 HOH A 19 LYS A 479 TYR A 880 HIS A 886 SITE 2 AC3 11 VAL A 887 ASP A 888 GLN A 891 MET A 892 SITE 3 AC3 11 ARG A 895 TYR A 925 HOH A1513 SITE 1 AC4 5 HOH A 100 HOH A 103 HOH A1473 HOH A1542 SITE 2 AC4 5 HOH A1543 SITE 1 AC5 8 TYR A 765 CYS A 768 THR A 769 TYR A 772 SITE 2 AC5 8 TYR A 823 SER A 826 PRO A 828 HOH A1502 SITE 1 AC6 6 HOH A 105 HIS A 653 LYS A 676 TYR A 741 SITE 2 AC6 6 ASN A 835 HOH A1417 SITE 1 AC7 8 HOH A 62 VAL A 459 GLY A 460 ASN A 471 SITE 2 AC7 8 ASN A 473 SER A 474 ARG A 489 ARG A 997 SITE 1 AC8 9 ILE A 483 LEU A 930 THR A 931 SER A 934 SITE 2 AC8 9 THR A 966 ARG A 969 HOH A1116 HOH A1154 SITE 3 AC8 9 HOH A1369 SITE 1 AC9 5 HOH A 26 GLY A 250 HOH A1099 HOH A1214 SITE 2 AC9 5 HOH A1536 SITE 1 BC1 5 HOH A1177 HOH A1537 HOH A1538 HOH A1539 SITE 2 BC1 5 HOH A1540 SITE 1 BC2 2 GLU A 957 HOH A1541 CRYST1 75.852 108.633 118.325 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008451 0.00000