HEADER CALCIUM-BINDING PROTEIN 28-AUG-08 3EBM TITLE CRYSTAL STRUCTURE OF HUMAN TRANSLATIONALLY CONTROLLED TUMOUR TITLE 2 ASSOCIATED PROTEIN (HTCTP) MUTANT E12V COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRANSLATIONALLY CONTROLLED TUMOUR ASSOCIATED PROTEIN, HTCTP, COMPND 5 TCTP, P23, HISTAMINE-RELEASING FACTOR, HRF, FORTILIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TPT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B+ KEYWDS TCTP, E12V, CALCIUM, CYTOPLASM, PHOSPHOPROTEIN, CALCIUM-BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.YANG,X.DONG,C.ZHONG,J.DING REVDAT 4 01-NOV-23 3EBM 1 REMARK REVDAT 3 10-NOV-21 3EBM 1 SEQADV REVDAT 2 10-NOV-09 3EBM 1 JRNL REVDAT 1 30-JUN-09 3EBM 0 JRNL AUTH X.DONG,B.YANG,Y.LI,C.ZHONG,J.DING JRNL TITL MOLECULAR BASIS OF THE ACCELERATION OF THE GDP-GTP EXCHANGE JRNL TITL 2 OF HUMAN RAS HOMOLOG ENRICHED IN BRAIN BY HUMAN JRNL TITL 3 TRANSLATIONALLY CONTROLLED TUMOR PROTEIN. JRNL REF J.BIOL.CHEM. V. 284 23754 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19570981 JRNL DOI 10.1074/JBC.M109.012823 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 26115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1832 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3980 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.4590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.24000 REMARK 3 B22 (A**2) : 7.40000 REMARK 3 B33 (A**2) : -5.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.322 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.599 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4888 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6542 ; 0.897 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 575 ; 4.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;34.026 ;24.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 962 ;15.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.239 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 691 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3631 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1984 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3388 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 140 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3006 ; 3.118 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4668 ; 4.263 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2133 ; 4.078 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1874 ; 6.503 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5139 ; 3.453 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 37 ; 1.227 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4792 ; 1.004 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : 0.46700 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YZ1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 8.2, 22% PEG 6000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.09600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.96000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.77150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.96000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.09600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.77150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 38 REMARK 465 THR A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 ASN A 42 REMARK 465 ILE A 43 REMARK 465 ASP A 44 REMARK 465 ASP A 45 REMARK 465 SER A 46 REMARK 465 LEU A 47 REMARK 465 ILE A 48 REMARK 465 GLY A 49 REMARK 465 GLY A 50 REMARK 465 ASN A 51 REMARK 465 ALA A 52 REMARK 465 SER A 53 REMARK 465 ALA A 54 REMARK 465 GLU A 55 REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 GLU A 58 REMARK 465 GLY A 59 REMARK 465 GLU A 60 REMARK 465 GLY A 61 REMARK 465 THR A 62 REMARK 465 GLU A 63 REMARK 465 SER A 64 REMARK 465 THR A 65 REMARK 465 VAL A 66 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 THR B 39 REMARK 465 GLU B 40 REMARK 465 GLY B 41 REMARK 465 ASN B 42 REMARK 465 ILE B 43 REMARK 465 ASP B 44 REMARK 465 ASP B 45 REMARK 465 SER B 46 REMARK 465 LEU B 47 REMARK 465 ILE B 48 REMARK 465 GLY B 49 REMARK 465 GLY B 50 REMARK 465 ASN B 51 REMARK 465 ALA B 52 REMARK 465 SER B 53 REMARK 465 ALA B 54 REMARK 465 GLU B 55 REMARK 465 GLY B 56 REMARK 465 PRO B 57 REMARK 465 GLU B 58 REMARK 465 GLY B 59 REMARK 465 GLU B 60 REMARK 465 GLY B 61 REMARK 465 THR B 62 REMARK 465 GLU B 63 REMARK 465 SER B 64 REMARK 465 THR B 65 REMARK 465 VAL B 66 REMARK 465 ILE B 67 REMARK 465 THR B 68 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 HIS B 180 REMARK 465 SER C 37 REMARK 465 ARG C 38 REMARK 465 THR C 39 REMARK 465 GLU C 40 REMARK 465 GLY C 41 REMARK 465 ASN C 42 REMARK 465 ILE C 43 REMARK 465 ASP C 44 REMARK 465 ASP C 45 REMARK 465 SER C 46 REMARK 465 LEU C 47 REMARK 465 ILE C 48 REMARK 465 GLY C 49 REMARK 465 GLY C 50 REMARK 465 ASN C 51 REMARK 465 ALA C 52 REMARK 465 SER C 53 REMARK 465 ALA C 54 REMARK 465 GLU C 55 REMARK 465 GLY C 56 REMARK 465 PRO C 57 REMARK 465 GLU C 58 REMARK 465 GLY C 59 REMARK 465 GLU C 60 REMARK 465 GLY C 61 REMARK 465 THR C 62 REMARK 465 GLU C 63 REMARK 465 SER C 64 REMARK 465 THR C 65 REMARK 465 VAL C 66 REMARK 465 ILE C 67 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 465 HIS C 179 REMARK 465 HIS C 180 REMARK 465 ARG D 38 REMARK 465 THR D 39 REMARK 465 GLU D 40 REMARK 465 GLY D 41 REMARK 465 ASN D 42 REMARK 465 ILE D 43 REMARK 465 ASP D 44 REMARK 465 ASP D 45 REMARK 465 SER D 46 REMARK 465 LEU D 47 REMARK 465 ILE D 48 REMARK 465 GLY D 49 REMARK 465 GLY D 50 REMARK 465 ASN D 51 REMARK 465 ALA D 52 REMARK 465 SER D 53 REMARK 465 ALA D 54 REMARK 465 GLU D 55 REMARK 465 GLY D 56 REMARK 465 PRO D 57 REMARK 465 GLU D 58 REMARK 465 GLY D 59 REMARK 465 GLU D 60 REMARK 465 GLY D 61 REMARK 465 THR D 62 REMARK 465 GLU D 63 REMARK 465 SER D 64 REMARK 465 THR D 65 REMARK 465 VAL D 66 REMARK 465 ILE D 67 REMARK 465 HIS D 175 REMARK 465 HIS D 176 REMARK 465 HIS D 177 REMARK 465 HIS D 178 REMARK 465 HIS D 179 REMARK 465 HIS D 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 177 CG HIS B 177 CD2 0.058 REMARK 500 LYS D 130 CE LYS D 130 NZ 0.284 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 152 -165.85 -68.45 REMARK 500 GLN D 106 -51.86 -129.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YZ1 RELATED DB: PDB REMARK 900 THE STRUCTURE OF WILD TYPE PROTEIN DBREF 3EBM A 1 172 UNP P13693 TCTP_HUMAN 1 172 DBREF 3EBM B 1 172 UNP P13693 TCTP_HUMAN 1 172 DBREF 3EBM C 1 172 UNP P13693 TCTP_HUMAN 1 172 DBREF 3EBM D 1 172 UNP P13693 TCTP_HUMAN 1 172 SEQADV 3EBM VAL A 12 UNP P13693 GLU 12 ENGINEERED MUTATION SEQADV 3EBM LEU A 173 UNP P13693 EXPRESSION TAG SEQADV 3EBM GLU A 174 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS A 175 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS A 176 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS A 177 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS A 178 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS A 179 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS A 180 UNP P13693 EXPRESSION TAG SEQADV 3EBM VAL B 12 UNP P13693 GLU 12 ENGINEERED MUTATION SEQADV 3EBM LEU B 173 UNP P13693 EXPRESSION TAG SEQADV 3EBM GLU B 174 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS B 175 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS B 176 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS B 177 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS B 178 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS B 179 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS B 180 UNP P13693 EXPRESSION TAG SEQADV 3EBM VAL C 12 UNP P13693 GLU 12 ENGINEERED MUTATION SEQADV 3EBM LEU C 173 UNP P13693 EXPRESSION TAG SEQADV 3EBM GLU C 174 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS C 175 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS C 176 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS C 177 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS C 178 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS C 179 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS C 180 UNP P13693 EXPRESSION TAG SEQADV 3EBM VAL D 12 UNP P13693 GLU 12 ENGINEERED MUTATION SEQADV 3EBM LEU D 173 UNP P13693 EXPRESSION TAG SEQADV 3EBM GLU D 174 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS D 175 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS D 176 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS D 177 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS D 178 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS D 179 UNP P13693 EXPRESSION TAG SEQADV 3EBM HIS D 180 UNP P13693 EXPRESSION TAG SEQRES 1 A 180 MET ILE ILE TYR ARG ASP LEU ILE SER HIS ASP VAL MET SEQRES 2 A 180 PHE SER ASP ILE TYR LYS ILE ARG GLU ILE ALA ASP GLY SEQRES 3 A 180 LEU CYS LEU GLU VAL GLU GLY LYS MET VAL SER ARG THR SEQRES 4 A 180 GLU GLY ASN ILE ASP ASP SER LEU ILE GLY GLY ASN ALA SEQRES 5 A 180 SER ALA GLU GLY PRO GLU GLY GLU GLY THR GLU SER THR SEQRES 6 A 180 VAL ILE THR GLY VAL ASP ILE VAL MET ASN HIS HIS LEU SEQRES 7 A 180 GLN GLU THR SER PHE THR LYS GLU ALA TYR LYS LYS TYR SEQRES 8 A 180 ILE LYS ASP TYR MET LYS SER ILE LYS GLY LYS LEU GLU SEQRES 9 A 180 GLU GLN ARG PRO GLU ARG VAL LYS PRO PHE MET THR GLY SEQRES 10 A 180 ALA ALA GLU GLN ILE LYS HIS ILE LEU ALA ASN PHE LYS SEQRES 11 A 180 ASN TYR GLN PHE PHE ILE GLY GLU ASN MET ASN PRO ASP SEQRES 12 A 180 GLY MET VAL ALA LEU LEU ASP TYR ARG GLU ASP GLY VAL SEQRES 13 A 180 THR PRO TYR MET ILE PHE PHE LYS ASP GLY LEU GLU MET SEQRES 14 A 180 GLU LYS CYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 180 MET ILE ILE TYR ARG ASP LEU ILE SER HIS ASP VAL MET SEQRES 2 B 180 PHE SER ASP ILE TYR LYS ILE ARG GLU ILE ALA ASP GLY SEQRES 3 B 180 LEU CYS LEU GLU VAL GLU GLY LYS MET VAL SER ARG THR SEQRES 4 B 180 GLU GLY ASN ILE ASP ASP SER LEU ILE GLY GLY ASN ALA SEQRES 5 B 180 SER ALA GLU GLY PRO GLU GLY GLU GLY THR GLU SER THR SEQRES 6 B 180 VAL ILE THR GLY VAL ASP ILE VAL MET ASN HIS HIS LEU SEQRES 7 B 180 GLN GLU THR SER PHE THR LYS GLU ALA TYR LYS LYS TYR SEQRES 8 B 180 ILE LYS ASP TYR MET LYS SER ILE LYS GLY LYS LEU GLU SEQRES 9 B 180 GLU GLN ARG PRO GLU ARG VAL LYS PRO PHE MET THR GLY SEQRES 10 B 180 ALA ALA GLU GLN ILE LYS HIS ILE LEU ALA ASN PHE LYS SEQRES 11 B 180 ASN TYR GLN PHE PHE ILE GLY GLU ASN MET ASN PRO ASP SEQRES 12 B 180 GLY MET VAL ALA LEU LEU ASP TYR ARG GLU ASP GLY VAL SEQRES 13 B 180 THR PRO TYR MET ILE PHE PHE LYS ASP GLY LEU GLU MET SEQRES 14 B 180 GLU LYS CYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 180 MET ILE ILE TYR ARG ASP LEU ILE SER HIS ASP VAL MET SEQRES 2 C 180 PHE SER ASP ILE TYR LYS ILE ARG GLU ILE ALA ASP GLY SEQRES 3 C 180 LEU CYS LEU GLU VAL GLU GLY LYS MET VAL SER ARG THR SEQRES 4 C 180 GLU GLY ASN ILE ASP ASP SER LEU ILE GLY GLY ASN ALA SEQRES 5 C 180 SER ALA GLU GLY PRO GLU GLY GLU GLY THR GLU SER THR SEQRES 6 C 180 VAL ILE THR GLY VAL ASP ILE VAL MET ASN HIS HIS LEU SEQRES 7 C 180 GLN GLU THR SER PHE THR LYS GLU ALA TYR LYS LYS TYR SEQRES 8 C 180 ILE LYS ASP TYR MET LYS SER ILE LYS GLY LYS LEU GLU SEQRES 9 C 180 GLU GLN ARG PRO GLU ARG VAL LYS PRO PHE MET THR GLY SEQRES 10 C 180 ALA ALA GLU GLN ILE LYS HIS ILE LEU ALA ASN PHE LYS SEQRES 11 C 180 ASN TYR GLN PHE PHE ILE GLY GLU ASN MET ASN PRO ASP SEQRES 12 C 180 GLY MET VAL ALA LEU LEU ASP TYR ARG GLU ASP GLY VAL SEQRES 13 C 180 THR PRO TYR MET ILE PHE PHE LYS ASP GLY LEU GLU MET SEQRES 14 C 180 GLU LYS CYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 180 MET ILE ILE TYR ARG ASP LEU ILE SER HIS ASP VAL MET SEQRES 2 D 180 PHE SER ASP ILE TYR LYS ILE ARG GLU ILE ALA ASP GLY SEQRES 3 D 180 LEU CYS LEU GLU VAL GLU GLY LYS MET VAL SER ARG THR SEQRES 4 D 180 GLU GLY ASN ILE ASP ASP SER LEU ILE GLY GLY ASN ALA SEQRES 5 D 180 SER ALA GLU GLY PRO GLU GLY GLU GLY THR GLU SER THR SEQRES 6 D 180 VAL ILE THR GLY VAL ASP ILE VAL MET ASN HIS HIS LEU SEQRES 7 D 180 GLN GLU THR SER PHE THR LYS GLU ALA TYR LYS LYS TYR SEQRES 8 D 180 ILE LYS ASP TYR MET LYS SER ILE LYS GLY LYS LEU GLU SEQRES 9 D 180 GLU GLN ARG PRO GLU ARG VAL LYS PRO PHE MET THR GLY SEQRES 10 D 180 ALA ALA GLU GLN ILE LYS HIS ILE LEU ALA ASN PHE LYS SEQRES 11 D 180 ASN TYR GLN PHE PHE ILE GLY GLU ASN MET ASN PRO ASP SEQRES 12 D 180 GLY MET VAL ALA LEU LEU ASP TYR ARG GLU ASP GLY VAL SEQRES 13 D 180 THR PRO TYR MET ILE PHE PHE LYS ASP GLY LEU GLU MET SEQRES 14 D 180 GLU LYS CYS LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *37(H2 O) HELIX 1 1 ASP A 71 HIS A 77 1 7 HELIX 2 2 THR A 84 ARG A 107 1 24 HELIX 3 3 ARG A 110 ASN A 128 1 19 HELIX 4 4 PHE A 129 TYR A 132 5 4 HELIX 5 5 VAL B 70 HIS B 76 1 7 HELIX 6 6 THR B 84 ARG B 107 1 24 HELIX 7 7 ARG B 110 ASN B 128 1 19 HELIX 8 8 PHE B 129 TYR B 132 5 4 HELIX 9 9 ALA C 24 GLY C 26 5 3 HELIX 10 10 VAL C 70 HIS C 77 1 8 HELIX 11 11 THR C 84 ARG C 107 1 24 HELIX 12 12 ARG C 110 ASN C 128 1 19 HELIX 13 13 PHE C 129 TYR C 132 5 4 HELIX 14 14 ASP D 71 HIS D 76 1 6 HELIX 15 15 THR D 84 ARG D 107 1 24 HELIX 16 16 ARG D 110 LEU D 126 1 17 HELIX 17 17 ASN D 128 TYR D 132 5 5 SHEET 1 A 3 VAL A 12 SER A 15 0 SHEET 2 A 3 ILE A 2 ASP A 6 -1 N TYR A 4 O PHE A 14 SHEET 3 A 3 LEU A 167 LYS A 171 -1 O GLU A 168 N ARG A 5 SHEET 1 B 6 LYS A 19 ILE A 23 0 SHEET 2 B 6 CYS A 28 GLU A 32 -1 O GLU A 30 N ARG A 21 SHEET 3 B 6 PRO A 158 PHE A 163 -1 O MET A 160 N VAL A 31 SHEET 4 B 6 ALA A 147 TYR A 151 -1 N ASP A 150 O TYR A 159 SHEET 5 B 6 GLN A 133 ILE A 136 -1 N PHE A 135 O ALA A 147 SHEET 6 B 6 GLN A 79 THR A 81 -1 N GLN A 79 O ILE A 136 SHEET 1 C 2 MET A 35 VAL A 36 0 SHEET 2 C 2 GLY A 69 VAL A 70 -1 O GLY A 69 N VAL A 36 SHEET 1 D 6 VAL B 12 SER B 15 0 SHEET 2 D 6 ILE B 2 ASP B 6 -1 N TYR B 4 O PHE B 14 SHEET 3 D 6 LEU B 167 HIS B 175 -1 O GLU B 168 N ARG B 5 SHEET 4 D 6 LEU C 167 HIS C 175 -1 O LYS C 171 N LEU B 173 SHEET 5 D 6 ILE C 2 ASP C 6 -1 N ILE C 3 O GLU C 170 SHEET 6 D 6 VAL C 12 SER C 15 -1 O PHE C 14 N TYR C 4 SHEET 1 E 6 ILE B 20 ILE B 23 0 SHEET 2 E 6 CYS B 28 GLU B 32 -1 O GLU B 30 N ARG B 21 SHEET 3 E 6 PRO B 158 PHE B 163 -1 O MET B 160 N VAL B 31 SHEET 4 E 6 ALA B 147 TYR B 151 -1 N ASP B 150 O TYR B 159 SHEET 5 E 6 GLN B 133 ILE B 136 -1 N GLN B 133 O LEU B 149 SHEET 6 E 6 GLN B 79 THR B 81 -1 N GLN B 79 O ILE B 136 SHEET 1 F 6 LYS C 19 ILE C 23 0 SHEET 2 F 6 CYS C 28 GLU C 32 -1 O GLU C 30 N ARG C 21 SHEET 3 F 6 PRO C 158 PHE C 163 -1 O MET C 160 N VAL C 31 SHEET 4 F 6 ALA C 147 TYR C 151 -1 N ASP C 150 O TYR C 159 SHEET 5 F 6 GLN C 133 ILE C 136 -1 N PHE C 135 O ALA C 147 SHEET 6 F 6 GLN C 79 THR C 81 -1 N GLN C 79 O ILE C 136 SHEET 1 G 3 VAL D 12 SER D 15 0 SHEET 2 G 3 ILE D 2 ASP D 6 -1 N TYR D 4 O MET D 13 SHEET 3 G 3 LEU D 167 LYS D 171 -1 O GLU D 168 N ARG D 5 SHEET 1 H 6 LYS D 19 ILE D 23 0 SHEET 2 H 6 CYS D 28 GLU D 32 -1 O GLU D 30 N ARG D 21 SHEET 3 H 6 PRO D 158 PHE D 163 -1 O MET D 160 N VAL D 31 SHEET 4 H 6 ALA D 147 TYR D 151 -1 N ASP D 150 O TYR D 159 SHEET 5 H 6 GLN D 133 ILE D 136 -1 N PHE D 135 O ALA D 147 SHEET 6 H 6 GLN D 79 THR D 81 -1 N THR D 81 O PHE D 134 SHEET 1 I 2 MET D 35 VAL D 36 0 SHEET 2 I 2 GLY D 69 VAL D 70 -1 O GLY D 69 N VAL D 36 SSBOND 1 CYS B 172 CYS C 172 1555 1555 2.04 CRYST1 78.192 81.543 139.920 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012789 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007147 0.00000