HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-AUG-08 3EBY TITLE CRYSTAL STRUCTURE OF THE BETA SUBUNIT OF A PUTATIVE AROMATIC-RING- TITLE 2 HYDROXYLATING DIOXYGENASE (YP_001165631.1) FROM NOVOSPHINGOBIUM TITLE 3 AROMATICIVORANS DSM 12444 AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA SUBUNIT OF A PUTATIVE AROMATIC-RING-HYDROXYLATING COMPND 3 DIOXYGENASE; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 GENE: YP_001165631.1, SARO_3860; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001165631.1, THE BETA SUBUNIT OF A PUTATIVE AROMATIC-RING- KEYWDS 2 HYDROXYLATING DIOXYGENASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 4 DIOXYGENASE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3EBY 1 REMARK SEQADV REVDAT 5 24-JUL-19 3EBY 1 REMARK LINK REVDAT 4 25-OCT-17 3EBY 1 REMARK REVDAT 3 13-JUL-11 3EBY 1 VERSN REVDAT 2 24-FEB-09 3EBY 1 VERSN REVDAT 1 09-SEP-08 3EBY 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF THE BETA SUBUNIT OF A PUTATIVE JRNL TITL 2 AROMATIC-RING-HYDROXYLATING DIOXYGENASE (YP_001165631.1) JRNL TITL 3 FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 AT 1.75 A JRNL TITL 4 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 939 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.00000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1261 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 810 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1728 ; 1.046 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1972 ; 0.697 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 168 ; 5.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;31.152 ;23.621 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 199 ;11.182 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.352 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 202 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1480 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 270 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 224 ; 0.214 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 858 ; 0.218 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 620 ; 0.174 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 672 ; 0.084 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.201 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.104 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.276 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.201 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.001 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 887 ; 2.733 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 330 ; 0.687 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1312 ; 3.462 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 491 ; 4.283 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 416 ; 5.655 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6003 11.2447 36.5233 REMARK 3 T TENSOR REMARK 3 T11: -0.0347 T22: -0.0294 REMARK 3 T33: -0.0267 T12: -0.0051 REMARK 3 T13: 0.0071 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.1025 L22: 0.9786 REMARK 3 L33: 0.4557 L12: 0.2899 REMARK 3 L13: -0.2721 L23: 0.1267 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.0118 S13: 0.1310 REMARK 3 S21: 0.0139 S22: 0.0555 S23: -0.1004 REMARK 3 S31: -0.0303 S32: -0.0092 S33: -0.0880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4.CHLORIDE ANION FROM CRYSTALLIZATION ARE MODELED REMARK 3 INTO THIS STRUCTURE. REMARK 4 REMARK 4 3EBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000049131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97929,0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 26.764 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M KCL, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 40.14500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 23.17773 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 48.34000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 40.14500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 23.17773 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 48.34000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 40.14500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 23.17773 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 48.34000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 40.14500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 23.17773 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.34000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 40.14500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 23.17773 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.34000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 40.14500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 23.17773 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.34000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 46.35545 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 96.68000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 46.35545 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 96.68000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 46.35545 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 96.68000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 46.35545 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 96.68000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 46.35545 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 96.68000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 46.35545 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 96.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 189 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 293 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 81 REMARK 465 PHE A 82 REMARK 465 PRO A 83 REMARK 465 GLU A 84 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 GLN A 9 CD OE1 NE2 REMARK 470 LYS A 78 CE NZ REMARK 470 ASN A 80 CG OD1 ND2 REMARK 470 GLU A 100 CD OE1 OE2 REMARK 470 ARG A 116 NE CZ NH1 NH2 REMARK 470 ASN A 117 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 61 SE MSE A 61 CE -0.384 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 79 61.18 -106.60 REMARK 500 ARG A 116 -169.29 -104.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 163 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391042 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EBY A 1 162 UNP A4XDU4 A4XDU4_NOVAD 1 162 SEQADV 3EBY GLY A 0 UNP A4XDU4 EXPRESSION TAG SEQRES 1 A 163 GLY MSE SER VAL ALA ALA GLU VAL ALA GLN VAL ALA GLN SEQRES 2 A 163 SER ALA ILE ASP ASP PHE ASN ALA ALA TYR GLY LEU CYS SEQRES 3 A 163 LEU ASP ASP ASP ARG LEU GLU GLN TRP PRO THR LEU PHE SEQRES 4 A 163 VAL ASP ASP CYS LEU TYR GLN VAL ILE ALA ARG GLU ASN SEQRES 5 A 163 VAL ASP ASN GLY LEU PRO ALA ALA VAL MSE TYR CYS ASP SEQRES 6 A 163 SER LYS GLY MSE LEU ALA ASP ARG VAL VAL ALA LEU ARG SEQRES 7 A 163 LYS ALA ASN VAL PHE PRO GLU HIS PHE ASN ARG HIS LEU SEQRES 8 A 163 ILE GLY ARG ALA VAL ILE THR GLY VAL GLU GLY ASP GLN SEQRES 9 A 163 VAL SER ALA GLU ALA SER TYR VAL VAL PHE GLN THR ARG SEQRES 10 A 163 ASN ASP GLY GLU THR ARG ILE TYR ASN ALA GLY LYS TYR SEQRES 11 A 163 VAL ASP ARG PHE ASP LEU SER GLY GLY THR VAL ARG LEU SEQRES 12 A 163 LYS SER ARG THR CYS ILE TYR ASP THR LEU ARG ILE ALA SEQRES 13 A 163 THR LEU LEU ALA THR PRO ILE MODRES 3EBY MSE A 61 MET SELENOMETHIONINE MODRES 3EBY MSE A 68 MET SELENOMETHIONINE HET MSE A 61 8 HET MSE A 68 8 HET CL A 163 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 HOH *173(H2 O) HELIX 1 1 GLU A 6 ASP A 28 1 23 HELIX 2 2 ARG A 30 THR A 36 5 7 HELIX 3 3 GLU A 50 ASN A 54 5 5 HELIX 4 4 SER A 65 ALA A 79 1 15 SHEET 1 A 6 ALA A 59 CYS A 63 0 SHEET 2 A 6 PHE A 38 ALA A 48 -1 N TYR A 44 O CYS A 63 SHEET 3 A 6 ARG A 141 TYR A 149 1 O CYS A 147 N GLN A 45 SHEET 4 A 6 THR A 121 ASP A 134 -1 N ASP A 134 O ARG A 141 SHEET 5 A 6 GLN A 103 THR A 115 -1 N VAL A 104 O PHE A 133 SHEET 6 A 6 PHE A 86 ILE A 91 -1 N ARG A 88 O PHE A 113 SHEET 1 B 6 ALA A 59 CYS A 63 0 SHEET 2 B 6 PHE A 38 ALA A 48 -1 N TYR A 44 O CYS A 63 SHEET 3 B 6 ARG A 141 TYR A 149 1 O CYS A 147 N GLN A 45 SHEET 4 B 6 THR A 121 ASP A 134 -1 N ASP A 134 O ARG A 141 SHEET 5 B 6 GLN A 103 THR A 115 -1 N VAL A 104 O PHE A 133 SHEET 6 B 6 VAL A 95 GLU A 100 -1 N VAL A 95 O GLU A 107 LINK C AVAL A 60 N MSE A 61 1555 1555 1.33 LINK C BVAL A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N TYR A 62 1555 1555 1.33 LINK C GLY A 67 N MSE A 68 1555 1555 1.34 LINK C MSE A 68 N LEU A 69 1555 1555 1.34 SITE 1 AC1 1 LEU A 158 CRYST1 80.290 80.290 145.020 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012455 0.007191 0.000000 0.00000 SCALE2 0.000000 0.014382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006896 0.00000