HEADER ISOMERASE 28-AUG-08 3EC3 TITLE CRYSTAL STRUCTURE OF THE BB FRAGMENT OF ERP72 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 283-523; COMPND 5 SYNONYM: PROTEIN ERP-72, ERP72, CALCIUM-BINDING PROTEIN 2, CABP2; COMPND 6 EC: 5.3.4.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PDIA4, CABP2, ERP70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS THIOREDOXIN-LIKE FOLD, ENDOPLASMIC RETICULUM, GLYCOPROTEIN, KEYWDS 2 ISOMERASE, REDOX-ACTIVE CENTER EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 4 20-OCT-21 3EC3 1 SEQADV LINK REVDAT 3 13-JUL-11 3EC3 1 VERSN REVDAT 2 26-MAY-09 3EC3 1 JRNL REVDAT 1 14-APR-09 3EC3 0 JRNL AUTH G.KOZLOV,P.MAATTANEN,J.D.SCHRAG,G.L.HURA,L.GABRIELLI, JRNL AUTH 2 M.CYGLER,D.Y.THOMAS,K.GEHRING JRNL TITL STRUCTURE OF THE NONCATALYTIC DOMAINS AND GLOBAL FOLD OF THE JRNL TITL 2 PROTEIN DISULFIDE ISOMERASE ERP72. JRNL REF STRUCTURE V. 17 651 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19446521 JRNL DOI 10.1016/J.STR.2009.02.016 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2238 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3075 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.417 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3773 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5089 ; 1.556 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 5.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;34.411 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;16.667 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2858 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1714 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2545 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 291 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2351 ; 1.141 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3698 ; 1.664 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1607 ; 2.610 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1391 ; 3.968 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 282 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4418 22.2048 37.5958 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0666 REMARK 3 T33: 0.0444 T12: -0.0488 REMARK 3 T13: -0.0131 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.7476 L22: 1.5736 REMARK 3 L33: 3.6812 L12: 1.2981 REMARK 3 L13: -0.9988 L23: 0.1958 REMARK 3 S TENSOR REMARK 3 S11: 0.2026 S12: -0.3163 S13: 0.0367 REMARK 3 S21: 0.1109 S22: -0.1287 S23: 0.0620 REMARK 3 S31: 0.0762 S32: 0.0628 S33: -0.0739 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 312 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7213 20.7496 29.6015 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0575 REMARK 3 T33: 0.0052 T12: -0.0192 REMARK 3 T13: 0.0057 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 4.2028 L22: 1.8990 REMARK 3 L33: 1.3520 L12: 1.7428 REMARK 3 L13: 1.7468 L23: 1.1072 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.3537 S13: -0.1893 REMARK 3 S21: -0.0631 S22: 0.0277 S23: -0.0351 REMARK 3 S31: 0.0348 S32: 0.0698 S33: -0.0434 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 389 A 452 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9089 24.3195 43.0266 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0521 REMARK 3 T33: 0.0698 T12: -0.0079 REMARK 3 T13: -0.0101 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.0452 L22: 1.2457 REMARK 3 L33: 3.5982 L12: -0.4867 REMARK 3 L13: -1.3128 L23: 0.8337 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -0.0468 S13: -0.1439 REMARK 3 S21: 0.0251 S22: 0.0425 S23: -0.1024 REMARK 3 S31: 0.2662 S32: 0.2402 S33: -0.0295 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 453 A 512 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9865 20.7569 45.5493 REMARK 3 T TENSOR REMARK 3 T11: -0.1151 T22: 0.2892 REMARK 3 T33: 0.0133 T12: 0.1724 REMARK 3 T13: -0.1033 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 3.7354 L22: 3.4479 REMARK 3 L33: 6.4571 L12: 0.0284 REMARK 3 L13: -1.8444 L23: 0.9093 REMARK 3 S TENSOR REMARK 3 S11: -0.1160 S12: -0.5938 S13: -0.0296 REMARK 3 S21: 0.2427 S22: 0.3187 S23: -0.4200 REMARK 3 S31: 0.5941 S32: 1.5733 S33: -0.2027 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 282 B 325 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9939 -7.5935 22.1079 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.0508 REMARK 3 T33: 0.0662 T12: -0.0281 REMARK 3 T13: -0.0043 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.0095 L22: 4.7821 REMARK 3 L33: 3.0769 L12: -0.7410 REMARK 3 L13: -0.4110 L23: -0.8253 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0048 S13: -0.1042 REMARK 3 S21: -0.2336 S22: 0.0916 S23: 0.1365 REMARK 3 S31: -0.0207 S32: -0.0967 S33: -0.0886 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 326 B 388 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8945 -0.4782 25.6431 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0266 REMARK 3 T33: 0.0098 T12: -0.0173 REMARK 3 T13: 0.0048 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.8356 L22: 4.7874 REMARK 3 L33: 1.6805 L12: -0.0479 REMARK 3 L13: -0.2451 L23: -1.8873 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: -0.1092 S13: -0.0555 REMARK 3 S21: 0.2792 S22: 0.0730 S23: 0.1322 REMARK 3 S31: 0.0183 S32: -0.0434 S33: 0.0049 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 389 B 452 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6125 14.6738 13.0481 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0256 REMARK 3 T33: 0.0667 T12: 0.0072 REMARK 3 T13: -0.0154 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.9043 L22: 1.5762 REMARK 3 L33: 3.6996 L12: -0.6147 REMARK 3 L13: -1.3710 L23: 0.7369 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.0535 S13: 0.0136 REMARK 3 S21: -0.0311 S22: -0.0162 S23: 0.1839 REMARK 3 S31: -0.1065 S32: -0.3606 S33: -0.0289 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 453 B 510 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3241 24.2641 10.5446 REMARK 3 T TENSOR REMARK 3 T11: 0.0556 T22: 0.1303 REMARK 3 T33: 0.0139 T12: 0.2591 REMARK 3 T13: -0.0127 T23: 0.1061 REMARK 3 L TENSOR REMARK 3 L11: 4.0232 L22: 3.7858 REMARK 3 L33: 6.4861 L12: -0.2491 REMARK 3 L13: -1.3663 L23: 1.0847 REMARK 3 S TENSOR REMARK 3 S11: 0.3344 S12: 0.4948 S13: 0.3810 REMARK 3 S21: -0.3137 S22: -0.0906 S23: 0.1599 REMARK 3 S31: -1.0687 S32: -1.2177 S33: -0.2438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9799, 0.9796, 0.9646 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42162 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG MME 2000, 25% GLYCEROL, 0.1M REMARK 280 TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.00133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.00267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 278 REMARK 465 PRO A 279 REMARK 465 LEU A 280 REMARK 465 GLY A 281 REMARK 465 LYS A 513 REMARK 465 SER A 514 REMARK 465 GLN A 515 REMARK 465 PRO A 516 REMARK 465 VAL A 517 REMARK 465 PRO A 518 REMARK 465 LYS A 519 REMARK 465 ASN A 520 REMARK 465 ASN A 521 REMARK 465 LYS A 522 REMARK 465 GLY A 523 REMARK 465 ALA A 524 REMARK 465 ALA A 525 REMARK 465 ALA A 526 REMARK 465 SER A 527 REMARK 465 GLY B 278 REMARK 465 PRO B 279 REMARK 465 LEU B 280 REMARK 465 GLY B 281 REMARK 465 VAL B 511 REMARK 465 ILE B 512 REMARK 465 LYS B 513 REMARK 465 SER B 514 REMARK 465 GLN B 515 REMARK 465 PRO B 516 REMARK 465 VAL B 517 REMARK 465 PRO B 518 REMARK 465 LYS B 519 REMARK 465 ASN B 520 REMARK 465 ASN B 521 REMARK 465 LYS B 522 REMARK 465 GLY B 523 REMARK 465 ALA B 524 REMARK 465 ALA B 525 REMARK 465 ALA B 526 REMARK 465 SER B 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 303 NH1 ARG A 406 1.83 REMARK 500 O HOH A 582 O HOH A 677 2.11 REMARK 500 OG SER A 468 O HOH A 713 2.13 REMARK 500 O HOH B 641 O HOH B 642 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 594 O HOH B 794 1565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 433 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 433 NE - CZ - NH2 ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 407 50.97 -116.85 REMARK 500 TYR A 417 -168.92 -167.44 REMARK 500 GLU A 487 108.52 -48.18 REMARK 500 TYR B 417 -168.20 -164.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLN497 TO ARG CONFLICT IN UNP ENTRY P38659 DBREF 3EC3 A 283 523 UNP P38659 PDIA4_RAT 283 523 DBREF 3EC3 B 283 523 UNP P38659 PDIA4_RAT 283 523 SEQADV 3EC3 GLY A 278 UNP P38659 INSERTION SEQADV 3EC3 PRO A 279 UNP P38659 INSERTION SEQADV 3EC3 LEU A 280 UNP P38659 INSERTION SEQADV 3EC3 GLY A 281 UNP P38659 INSERTION SEQADV 3EC3 SER A 282 UNP P38659 INSERTION SEQADV 3EC3 GLY A 470 UNP P38659 GLU 470 ENGINEERED MUTATION SEQADV 3EC3 ARG A 497 UNP P38659 GLN 497 SEE REMARK 999 SEQADV 3EC3 ALA A 524 UNP P38659 INSERTION SEQADV 3EC3 ALA A 525 UNP P38659 INSERTION SEQADV 3EC3 ALA A 526 UNP P38659 INSERTION SEQADV 3EC3 SER A 527 UNP P38659 INSERTION SEQADV 3EC3 GLY B 278 UNP P38659 INSERTION SEQADV 3EC3 PRO B 279 UNP P38659 INSERTION SEQADV 3EC3 LEU B 280 UNP P38659 INSERTION SEQADV 3EC3 GLY B 281 UNP P38659 INSERTION SEQADV 3EC3 SER B 282 UNP P38659 INSERTION SEQADV 3EC3 GLY B 470 UNP P38659 GLU 470 ENGINEERED MUTATION SEQADV 3EC3 ARG B 497 UNP P38659 GLN 497 SEE REMARK 999 SEQADV 3EC3 ALA B 524 UNP P38659 INSERTION SEQADV 3EC3 ALA B 525 UNP P38659 INSERTION SEQADV 3EC3 ALA B 526 UNP P38659 INSERTION SEQADV 3EC3 SER B 527 UNP P38659 INSERTION SEQRES 1 A 250 GLY PRO LEU GLY SER PRO PRO SER LYS GLU ILE LEU THR SEQRES 2 A 250 LEU LYS GLN VAL GLN GLU PHE LEU LYS ASP GLY ASP ASP SEQRES 3 A 250 VAL VAL ILE LEU GLY VAL PHE GLN GLY VAL GLY ASP PRO SEQRES 4 A 250 GLY TYR LEU GLN TYR GLN ASP ALA ALA ASN THR LEU ARG SEQRES 5 A 250 GLU ASP TYR LYS PHE HIS HIS THR PHE SER THR GLU ILE SEQRES 6 A 250 ALA LYS PHE LEU LYS VAL SER LEU GLY LYS LEU VAL LEU SEQRES 7 A 250 MSE GLN PRO GLU LYS PHE GLN SER LYS TYR GLU PRO ARG SEQRES 8 A 250 MSE HIS VAL MSE ASP VAL GLN GLY SER THR GLU ALA SER SEQRES 9 A 250 ALA ILE LYS ASP TYR VAL VAL LYS HIS ALA LEU PRO LEU SEQRES 10 A 250 VAL GLY HIS ARG LYS THR SER ASN ASP ALA LYS ARG TYR SEQRES 11 A 250 SER LYS ARG PRO LEU VAL VAL VAL TYR TYR SER VAL ASP SEQRES 12 A 250 PHE SER PHE ASP TYR ARG THR ALA THR GLN PHE TRP ARG SEQRES 13 A 250 ASN LYS VAL LEU GLU VAL ALA LYS ASP PHE PRO GLU TYR SEQRES 14 A 250 THR PHE ALA ILE ALA ASP GLU GLU ASP TYR ALA THR GLU SEQRES 15 A 250 VAL LYS ASP LEU GLY LEU SER GLU SER GLY GLY ASP VAL SEQRES 16 A 250 ASN ALA ALA ILE LEU ASP GLU SER GLY LYS LYS PHE ALA SEQRES 17 A 250 MSE GLU PRO GLU GLU PHE ASP SER ASP ALA LEU ARG GLU SEQRES 18 A 250 PHE VAL MSE ALA PHE LYS LYS GLY LYS LEU LYS PRO VAL SEQRES 19 A 250 ILE LYS SER GLN PRO VAL PRO LYS ASN ASN LYS GLY ALA SEQRES 20 A 250 ALA ALA SER SEQRES 1 B 250 GLY PRO LEU GLY SER PRO PRO SER LYS GLU ILE LEU THR SEQRES 2 B 250 LEU LYS GLN VAL GLN GLU PHE LEU LYS ASP GLY ASP ASP SEQRES 3 B 250 VAL VAL ILE LEU GLY VAL PHE GLN GLY VAL GLY ASP PRO SEQRES 4 B 250 GLY TYR LEU GLN TYR GLN ASP ALA ALA ASN THR LEU ARG SEQRES 5 B 250 GLU ASP TYR LYS PHE HIS HIS THR PHE SER THR GLU ILE SEQRES 6 B 250 ALA LYS PHE LEU LYS VAL SER LEU GLY LYS LEU VAL LEU SEQRES 7 B 250 MSE GLN PRO GLU LYS PHE GLN SER LYS TYR GLU PRO ARG SEQRES 8 B 250 MSE HIS VAL MSE ASP VAL GLN GLY SER THR GLU ALA SER SEQRES 9 B 250 ALA ILE LYS ASP TYR VAL VAL LYS HIS ALA LEU PRO LEU SEQRES 10 B 250 VAL GLY HIS ARG LYS THR SER ASN ASP ALA LYS ARG TYR SEQRES 11 B 250 SER LYS ARG PRO LEU VAL VAL VAL TYR TYR SER VAL ASP SEQRES 12 B 250 PHE SER PHE ASP TYR ARG THR ALA THR GLN PHE TRP ARG SEQRES 13 B 250 ASN LYS VAL LEU GLU VAL ALA LYS ASP PHE PRO GLU TYR SEQRES 14 B 250 THR PHE ALA ILE ALA ASP GLU GLU ASP TYR ALA THR GLU SEQRES 15 B 250 VAL LYS ASP LEU GLY LEU SER GLU SER GLY GLY ASP VAL SEQRES 16 B 250 ASN ALA ALA ILE LEU ASP GLU SER GLY LYS LYS PHE ALA SEQRES 17 B 250 MSE GLU PRO GLU GLU PHE ASP SER ASP ALA LEU ARG GLU SEQRES 18 B 250 PHE VAL MSE ALA PHE LYS LYS GLY LYS LEU LYS PRO VAL SEQRES 19 B 250 ILE LYS SER GLN PRO VAL PRO LYS ASN ASN LYS GLY ALA SEQRES 20 B 250 ALA ALA SER MODRES 3EC3 MSE A 356 MET SELENOMETHIONINE MODRES 3EC3 MSE A 369 MET SELENOMETHIONINE MODRES 3EC3 MSE A 372 MET SELENOMETHIONINE MODRES 3EC3 MSE A 486 MET SELENOMETHIONINE MODRES 3EC3 MSE A 501 MET SELENOMETHIONINE MODRES 3EC3 MSE B 356 MET SELENOMETHIONINE MODRES 3EC3 MSE B 369 MET SELENOMETHIONINE MODRES 3EC3 MSE B 372 MET SELENOMETHIONINE MODRES 3EC3 MSE B 486 MET SELENOMETHIONINE MODRES 3EC3 MSE B 501 MET SELENOMETHIONINE HET MSE A 356 8 HET MSE A 369 8 HET MSE A 372 8 HET MSE A 486 8 HET MSE A 501 8 HET MSE B 356 8 HET MSE B 369 8 HET MSE B 372 8 HET MSE B 486 8 HET MSE B 501 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *388(H2 O) HELIX 1 1 THR A 290 GLY A 301 1 12 HELIX 2 2 ASP A 315 ARG A 329 1 15 HELIX 3 3 SER A 339 LYS A 347 1 9 HELIX 4 4 PRO A 358 GLN A 362 5 5 HELIX 5 6 ASN A 402 TYR A 407 1 6 HELIX 6 7 TYR A 425 LYS A 441 1 17 HELIX 7 8 TYR A 456 LEU A 463 1 8 HELIX 8 9 ASP A 492 LYS A 505 1 14 HELIX 9 10 THR B 290 GLY B 301 1 12 HELIX 10 11 ASP B 315 LEU B 328 1 14 HELIX 11 12 SER B 339 LYS B 347 1 9 HELIX 12 13 PRO B 358 GLN B 362 5 5 HELIX 13 15 ASN B 402 TYR B 407 1 6 HELIX 14 16 TYR B 425 LYS B 441 1 17 HELIX 15 17 TYR B 456 LEU B 463 1 8 HELIX 16 18 ASP B 492 LYS B 505 1 14 SHEET 1 A 5 LYS A 286 GLU A 287 0 SHEET 2 A 5 PHE A 334 THR A 337 1 O PHE A 334 N LYS A 286 SHEET 3 A 5 VAL A 305 VAL A 309 1 N GLY A 308 O THR A 337 SHEET 4 A 5 LYS A 352 MSE A 356 -1 O LYS A 352 N VAL A 309 SHEET 5 A 5 HIS A 370 ASP A 373 -1 O MSE A 372 N LEU A 353 SHEET 1 B 5 VAL A 395 ARG A 398 0 SHEET 2 B 5 THR A 447 ASP A 452 1 O ILE A 450 N ARG A 398 SHEET 3 B 5 LEU A 412 TYR A 417 1 N VAL A 413 O THR A 447 SHEET 4 B 5 ASN A 473 LEU A 477 -1 O ALA A 475 N VAL A 414 SHEET 5 B 5 LYS A 483 ALA A 485 -1 O PHE A 484 N ILE A 476 SHEET 1 C 5 LYS B 286 GLU B 287 0 SHEET 2 C 5 PHE B 334 THR B 337 1 O PHE B 334 N LYS B 286 SHEET 3 C 5 VAL B 305 VAL B 309 1 N GLY B 308 O THR B 337 SHEET 4 C 5 LYS B 352 MSE B 356 -1 O LYS B 352 N VAL B 309 SHEET 5 C 5 MSE B 369 ASP B 373 -1 O MSE B 372 N LEU B 353 SHEET 1 D 5 VAL B 395 ARG B 398 0 SHEET 2 D 5 THR B 447 ASP B 452 1 O ILE B 450 N ARG B 398 SHEET 3 D 5 LEU B 412 TYR B 417 1 N VAL B 413 O THR B 447 SHEET 4 D 5 ASN B 473 LEU B 477 -1 O ALA B 475 N VAL B 414 SHEET 5 D 5 LYS B 483 ALA B 485 -1 O PHE B 484 N ILE B 476 LINK C LEU A 355 N MSE A 356 1555 1555 1.33 LINK C MSE A 356 N GLN A 357 1555 1555 1.33 LINK C ARG A 368 N MSE A 369 1555 1555 1.33 LINK C MSE A 369 N HIS A 370 1555 1555 1.33 LINK C VAL A 371 N MSE A 372 1555 1555 1.34 LINK C MSE A 372 N ASP A 373 1555 1555 1.34 LINK C ALA A 485 N MSE A 486 1555 1555 1.34 LINK C MSE A 486 N GLU A 487 1555 1555 1.34 LINK C VAL A 500 N MSE A 501 1555 1555 1.33 LINK C MSE A 501 N ALA A 502 1555 1555 1.33 LINK C LEU B 355 N MSE B 356 1555 1555 1.32 LINK C MSE B 356 N GLN B 357 1555 1555 1.33 LINK C ARG B 368 N MSE B 369 1555 1555 1.32 LINK C MSE B 369 N HIS B 370 1555 1555 1.32 LINK C VAL B 371 N MSE B 372 1555 1555 1.33 LINK C MSE B 372 N ASP B 373 1555 1555 1.34 LINK C ALA B 485 N MSE B 486 1555 1555 1.33 LINK C MSE B 486 N GLU B 487 1555 1555 1.33 LINK C VAL B 500 N MSE B 501 1555 1555 1.33 LINK C MSE B 501 N ALA B 502 1555 1555 1.33 CISPEP 1 ARG A 410 PRO A 411 0 -3.36 CISPEP 2 ARG B 410 PRO B 411 0 -2.64 CRYST1 62.171 62.171 135.004 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016085 0.009286 0.000000 0.00000 SCALE2 0.000000 0.018573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007407 0.00000