data_3EC8 # _entry.id 3EC8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3EC8 RCSB RCSB049141 WWPDB D_1000049141 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EC8 _pdbx_database_status.recvd_initial_deposition_date 2008-08-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wisniewska, M.' 1 'Lehtio, L.' 2 'Andersson, J.' 3 'Arrowsmith, C.H.' 4 'Collins, R.' 5 'Dahlgren, L.G.' 6 'Edwards, A.M.' 7 'Flodin, S.' 8 'Flores, A.' 9 'Graslund, S.' 10 'Hammarstrom, M.' 11 'Johansson, A.' 12 'Johansson, I.' 13 'Karlberg, T.' 14 'Kotenyova, T.' 15 'Moche, M.' 16 'Nilsson, M.E.' 17 'Nordlund, P.' 18 'Nyman, T.' 19 'Olesen, K.' 20 'Persson, C.' 21 'Sagemark, J.' 22 'Schueler, H.' 23 'Thorsell, A.G.' 24 'Tresaugues, L.' 25 'van den Berg, S.' 26 'Weigelt, J.' 27 'Welin, M.' 28 'Wikstrom, M.' 29 'Berglund, H.' 30 'Structural Genomics Consortium (SGC)' 31 # _citation.id primary _citation.title 'The crystal structure of the RA domain of FLJ10324 (RADIL)' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wisniewska, M.' 1 primary 'Lehtio, L.' 2 primary 'Andersson, J.' 3 primary 'Arrowsmith, C.H.' 4 primary 'Collins, R.' 5 primary 'Dahlgren, L.G.' 6 primary 'Edwards, A.M.' 7 primary 'Flodin, S.' 8 primary 'Flores, A.' 9 primary 'Graslund, S.' 10 primary 'Hammarstrom, M.' 11 primary 'Johansson, A.' 12 primary 'Johansson, I.' 13 primary 'Karlberg, T.' 14 primary 'Kotenyova, T.' 15 primary 'Moche, M.' 16 primary 'Nilsson, M.E.' 17 primary 'Nordlund, P.' 18 primary 'Nyman, T.' 19 primary 'Olesen, K.' 20 primary 'Persson, C.' 21 primary 'Sagemark, J.' 22 primary 'Schueler, H.' 23 primary 'Thorsell, A.G.' 24 primary 'Tresaugues, L.' 25 primary 'van den Berg, S.' 26 primary 'Weigelt, J.' 27 primary 'Welin, M.' 28 primary 'Wikstrom, M.' 29 primary 'Berglund, H.' 30 # _cell.entry_id 3EC8 _cell.length_a 46.080 _cell.length_b 46.080 _cell.length_c 135.610 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EC8 _symmetry.space_group_name_H-M 'P 31 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative uncharacterized protein FLJ10324' 18561.910 1 ? ? 'RA domain' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'LEAD (II) ION' 207.200 2 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 9 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHSSGVDLGTENLYFQSMDPAELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQA GQYVLCDVVGQAGDAGQRWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGINAQARRL QRSRAK ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMDPAELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQA GQYVLCDVVGQAGDAGQRWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGINAQARRL QRSRAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MET n 1 24 ASP n 1 25 PRO n 1 26 ALA n 1 27 GLU n 1 28 LEU n 1 29 SER n 1 30 THR n 1 31 GLN n 1 32 LEU n 1 33 SER n 1 34 ALA n 1 35 PRO n 1 36 GLY n 1 37 VAL n 1 38 LEU n 1 39 LYS n 1 40 VAL n 1 41 PHE n 1 42 GLY n 1 43 ASP n 1 44 SER n 1 45 VAL n 1 46 CYS n 1 47 THR n 1 48 GLY n 1 49 THR n 1 50 HIS n 1 51 TYR n 1 52 LYS n 1 53 SER n 1 54 VAL n 1 55 LEU n 1 56 ALA n 1 57 THR n 1 58 GLY n 1 59 THR n 1 60 SER n 1 61 SER n 1 62 ALA n 1 63 ARG n 1 64 GLU n 1 65 LEU n 1 66 VAL n 1 67 LYS n 1 68 GLU n 1 69 ALA n 1 70 LEU n 1 71 GLU n 1 72 ARG n 1 73 TYR n 1 74 ALA n 1 75 LEU n 1 76 ASP n 1 77 PRO n 1 78 ARG n 1 79 GLN n 1 80 ALA n 1 81 GLY n 1 82 GLN n 1 83 TYR n 1 84 VAL n 1 85 LEU n 1 86 CYS n 1 87 ASP n 1 88 VAL n 1 89 VAL n 1 90 GLY n 1 91 GLN n 1 92 ALA n 1 93 GLY n 1 94 ASP n 1 95 ALA n 1 96 GLY n 1 97 GLN n 1 98 ARG n 1 99 TRP n 1 100 GLN n 1 101 ALA n 1 102 ARG n 1 103 CYS n 1 104 PHE n 1 105 ARG n 1 106 VAL n 1 107 PHE n 1 108 GLY n 1 109 ASP n 1 110 SER n 1 111 GLU n 1 112 LYS n 1 113 PRO n 1 114 LEU n 1 115 LEU n 1 116 ILE n 1 117 GLN n 1 118 GLU n 1 119 LEU n 1 120 TRP n 1 121 LYS n 1 122 PRO n 1 123 ARG n 1 124 GLU n 1 125 GLY n 1 126 LEU n 1 127 SER n 1 128 ARG n 1 129 ARG n 1 130 PHE n 1 131 GLU n 1 132 LEU n 1 133 ARG n 1 134 LYS n 1 135 ARG n 1 136 SER n 1 137 ASP n 1 138 VAL n 1 139 GLU n 1 140 GLU n 1 141 LEU n 1 142 ALA n 1 143 ALA n 1 144 LYS n 1 145 GLU n 1 146 VAL n 1 147 ASP n 1 148 THR n 1 149 ILE n 1 150 THR n 1 151 ALA n 1 152 GLY n 1 153 ILE n 1 154 ASN n 1 155 ALA n 1 156 GLN n 1 157 ALA n 1 158 ARG n 1 159 ARG n 1 160 LEU n 1 161 GLN n 1 162 ARG n 1 163 SER n 1 164 ARG n 1 165 ALA n 1 166 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) R3 pRARE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4D1Z5_HUMAN _struct_ref.pdbx_db_accession A4D1Z5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DPAELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAGDAGQRWQARC FRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGINAQARRLQRSRAK ; _struct_ref.pdbx_align_begin 51 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EC8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 24 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A4D1Z5 _struct_ref_seq.db_align_beg 51 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 193 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 51 _struct_ref_seq.pdbx_auth_seq_align_end 193 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EC8 MET A 1 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 28 1 1 3EC8 HIS A 2 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 29 2 1 3EC8 HIS A 3 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 30 3 1 3EC8 HIS A 4 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 31 4 1 3EC8 HIS A 5 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 32 5 1 3EC8 HIS A 6 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 33 6 1 3EC8 HIS A 7 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 34 7 1 3EC8 SER A 8 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 35 8 1 3EC8 SER A 9 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 36 9 1 3EC8 GLY A 10 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 37 10 1 3EC8 VAL A 11 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 38 11 1 3EC8 ASP A 12 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 39 12 1 3EC8 LEU A 13 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 40 13 1 3EC8 GLY A 14 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 41 14 1 3EC8 THR A 15 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 42 15 1 3EC8 GLU A 16 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 43 16 1 3EC8 ASN A 17 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 44 17 1 3EC8 LEU A 18 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 45 18 1 3EC8 TYR A 19 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 46 19 1 3EC8 PHE A 20 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 47 20 1 3EC8 GLN A 21 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 48 21 1 3EC8 SER A 22 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 49 22 1 3EC8 MET A 23 ? UNP A4D1Z5 ? ? 'EXPRESSION TAG' 50 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PB non-polymer . 'LEAD (II) ION' ? 'Pb 2' 207.200 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3EC8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.4M Ammonium dihydrogen phosphate, 0.1M TRIS pH 8.5, 35 %(v/v) MPD , VAPOR DIFFUSION, SITTING DROP, temperature 277.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-05-27 _diffrn_detector.details 'Double crystal monochromator with 2 sets of mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.00849 1.0 2 0.91841 1.0 3 0.97968 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.00849, 0.91841, 0.97968' # _reflns.entry_id 3EC8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.74 _reflns.d_resolution_high 2.6 _reflns.number_obs 9816 _reflns.number_all ? _reflns.percent_possible_obs 99.23 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3EC8 _refine.ls_number_reflns_obs 4715 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 11.63 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.23149 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22720 _refine.ls_R_factor_R_free 0.27009 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 524 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.913 _refine.B_iso_mean 32.731 _refine.aniso_B[1][1] 0.22 _refine.aniso_B[2][2] 0.22 _refine.aniso_B[3][3] -0.33 _refine.aniso_B[1][2] 0.11 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.143 _refine.pdbx_overall_ESU_R_Free 0.351 _refine.overall_SU_ML 0.259 _refine.overall_SU_B 26.771 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1080 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 1098 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 11.63 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1101 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 775 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.107 1.977 ? 1481 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.824 3.000 ? 1873 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.261 5.000 ? 136 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.012 23.333 ? 51 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.243 15.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.092 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.068 0.200 ? 164 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1217 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 228 'X-RAY DIFFRACTION' ? r_mcbond_it 0.446 1.500 ? 687 'X-RAY DIFFRACTION' ? r_mcbond_other 0.062 1.500 ? 282 'X-RAY DIFFRACTION' ? r_mcangle_it 0.842 2.000 ? 1091 'X-RAY DIFFRACTION' ? r_scbond_it 1.040 3.000 ? 414 'X-RAY DIFFRACTION' ? r_scangle_it 1.843 4.500 ? 390 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.600 _refine_ls_shell.d_res_low 2.666 _refine_ls_shell.number_reflns_R_work 333 _refine_ls_shell.R_factor_R_work 0.304 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.344 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EC8 _struct.title 'The crystal structure of the RA domain of FLJ10324 (RADIL)' _struct.pdbx_descriptor 'Putative uncharacterized protein FLJ10324' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EC8 _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'beta barrel, helix, Structural Genomics, Structural Genomics Consortium, SGC, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 24 ? ALA A 34 ? ASP A 51 ALA A 61 1 ? 11 HELX_P HELX_P2 2 SER A 61 ? TYR A 73 ? SER A 88 TYR A 100 1 ? 13 HELX_P HELX_P3 3 ASP A 76 ? GLY A 81 ? ASP A 103 GLY A 108 5 ? 6 HELX_P HELX_P4 4 LYS A 112 ? TRP A 120 ? LYS A 139 TRP A 147 1 ? 9 HELX_P HELX_P5 5 ARG A 135 ? ARG A 162 ? ARG A 162 ARG A 189 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 52 ? THR A 57 ? LYS A 79 THR A 84 A 2 PRO A 35 ? PHE A 41 ? PRO A 62 PHE A 68 A 3 SER A 127 ? LYS A 134 ? SER A 154 LYS A 161 A 4 TYR A 83 ? GLY A 90 ? TYR A 110 GLY A 117 A 5 CYS A 103 ? VAL A 106 ? CYS A 130 VAL A 133 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 56 ? O ALA A 83 N GLY A 36 ? N GLY A 63 A 2 3 N PHE A 41 ? N PHE A 68 O PHE A 130 ? O PHE A 157 A 3 4 O ARG A 129 ? O ARG A 156 N VAL A 88 ? N VAL A 115 A 4 5 N VAL A 89 ? N VAL A 116 O CYS A 103 ? O CYS A 130 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PB A 2' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 195' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LEU A 18 ? LEU A 45 . ? 1_555 ? 2 AC1 3 GLU A 145 ? GLU A 172 . ? 4_554 ? 3 AC1 3 HOH F . ? HOH A 203 . ? 1_555 ? 4 AC2 3 ASP A 87 ? ASP A 114 . ? 4_554 ? 5 AC2 3 ARG A 105 ? ARG A 132 . ? 4_554 ? 6 AC2 3 ILE A 116 ? ILE A 143 . ? 4_554 ? # _database_PDB_matrix.entry_id 3EC8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3EC8 _atom_sites.fract_transf_matrix[1][1] 0.021701 _atom_sites.fract_transf_matrix[1][2] 0.012529 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025059 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007374 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O PB S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 28 ? ? ? A . n A 1 2 HIS 2 29 ? ? ? A . n A 1 3 HIS 3 30 ? ? ? A . n A 1 4 HIS 4 31 ? ? ? A . n A 1 5 HIS 5 32 ? ? ? A . n A 1 6 HIS 6 33 ? ? ? A . n A 1 7 HIS 7 34 ? ? ? A . n A 1 8 SER 8 35 ? ? ? A . n A 1 9 SER 9 36 ? ? ? A . n A 1 10 GLY 10 37 ? ? ? A . n A 1 11 VAL 11 38 ? ? ? A . n A 1 12 ASP 12 39 ? ? ? A . n A 1 13 LEU 13 40 ? ? ? A . n A 1 14 GLY 14 41 41 GLY GLY A . n A 1 15 THR 15 42 42 THR THR A . n A 1 16 GLU 16 43 43 GLU GLU A . n A 1 17 ASN 17 44 44 ASN ASN A . n A 1 18 LEU 18 45 45 LEU LEU A . n A 1 19 TYR 19 46 46 TYR TYR A . n A 1 20 PHE 20 47 47 PHE PHE A . n A 1 21 GLN 21 48 48 GLN GLN A . n A 1 22 SER 22 49 49 SER SER A . n A 1 23 MET 23 50 50 MET MET A . n A 1 24 ASP 24 51 51 ASP ASP A . n A 1 25 PRO 25 52 52 PRO PRO A . n A 1 26 ALA 26 53 53 ALA ALA A . n A 1 27 GLU 27 54 54 GLU GLU A . n A 1 28 LEU 28 55 55 LEU LEU A . n A 1 29 SER 29 56 56 SER SER A . n A 1 30 THR 30 57 57 THR THR A . n A 1 31 GLN 31 58 58 GLN GLN A . n A 1 32 LEU 32 59 59 LEU LEU A . n A 1 33 SER 33 60 60 SER SER A . n A 1 34 ALA 34 61 61 ALA ALA A . n A 1 35 PRO 35 62 62 PRO PRO A . n A 1 36 GLY 36 63 63 GLY GLY A . n A 1 37 VAL 37 64 64 VAL VAL A . n A 1 38 LEU 38 65 65 LEU LEU A . n A 1 39 LYS 39 66 66 LYS LYS A . n A 1 40 VAL 40 67 67 VAL VAL A . n A 1 41 PHE 41 68 68 PHE PHE A . n A 1 42 GLY 42 69 69 GLY GLY A . n A 1 43 ASP 43 70 70 ASP ASP A . n A 1 44 SER 44 71 71 SER SER A . n A 1 45 VAL 45 72 ? ? ? A . n A 1 46 CYS 46 73 ? ? ? A . n A 1 47 THR 47 74 74 THR THR A . n A 1 48 GLY 48 75 75 GLY GLY A . n A 1 49 THR 49 76 76 THR THR A . n A 1 50 HIS 50 77 77 HIS HIS A . n A 1 51 TYR 51 78 78 TYR TYR A . n A 1 52 LYS 52 79 79 LYS LYS A . n A 1 53 SER 53 80 80 SER SER A . n A 1 54 VAL 54 81 81 VAL VAL A . n A 1 55 LEU 55 82 82 LEU LEU A . n A 1 56 ALA 56 83 83 ALA ALA A . n A 1 57 THR 57 84 84 THR THR A . n A 1 58 GLY 58 85 85 GLY GLY A . n A 1 59 THR 59 86 86 THR THR A . n A 1 60 SER 60 87 87 SER SER A . n A 1 61 SER 61 88 88 SER SER A . n A 1 62 ALA 62 89 89 ALA ALA A . n A 1 63 ARG 63 90 90 ARG ARG A . n A 1 64 GLU 64 91 91 GLU GLU A . n A 1 65 LEU 65 92 92 LEU LEU A . n A 1 66 VAL 66 93 93 VAL VAL A . n A 1 67 LYS 67 94 94 LYS LYS A . n A 1 68 GLU 68 95 95 GLU GLU A . n A 1 69 ALA 69 96 96 ALA ALA A . n A 1 70 LEU 70 97 97 LEU LEU A . n A 1 71 GLU 71 98 98 GLU GLU A . n A 1 72 ARG 72 99 99 ARG ARG A . n A 1 73 TYR 73 100 100 TYR TYR A . n A 1 74 ALA 74 101 101 ALA ALA A . n A 1 75 LEU 75 102 102 LEU LEU A . n A 1 76 ASP 76 103 103 ASP ASP A . n A 1 77 PRO 77 104 104 PRO PRO A . n A 1 78 ARG 78 105 105 ARG ARG A . n A 1 79 GLN 79 106 106 GLN GLN A . n A 1 80 ALA 80 107 107 ALA ALA A . n A 1 81 GLY 81 108 108 GLY GLY A . n A 1 82 GLN 82 109 109 GLN GLN A . n A 1 83 TYR 83 110 110 TYR TYR A . n A 1 84 VAL 84 111 111 VAL VAL A . n A 1 85 LEU 85 112 112 LEU LEU A . n A 1 86 CYS 86 113 113 CYS CYS A . n A 1 87 ASP 87 114 114 ASP ASP A . n A 1 88 VAL 88 115 115 VAL VAL A . n A 1 89 VAL 89 116 116 VAL VAL A . n A 1 90 GLY 90 117 117 GLY GLY A . n A 1 91 GLN 91 118 ? ? ? A . n A 1 92 ALA 92 119 ? ? ? A . n A 1 93 GLY 93 120 ? ? ? A . n A 1 94 ASP 94 121 ? ? ? A . n A 1 95 ALA 95 122 ? ? ? A . n A 1 96 GLY 96 123 ? ? ? A . n A 1 97 GLN 97 124 ? ? ? A . n A 1 98 ARG 98 125 ? ? ? A . n A 1 99 TRP 99 126 126 TRP TRP A . n A 1 100 GLN 100 127 127 GLN GLN A . n A 1 101 ALA 101 128 128 ALA ALA A . n A 1 102 ARG 102 129 129 ARG ARG A . n A 1 103 CYS 103 130 130 CYS CYS A . n A 1 104 PHE 104 131 131 PHE PHE A . n A 1 105 ARG 105 132 132 ARG ARG A . n A 1 106 VAL 106 133 133 VAL VAL A . n A 1 107 PHE 107 134 134 PHE PHE A . n A 1 108 GLY 108 135 135 GLY GLY A . n A 1 109 ASP 109 136 136 ASP ASP A . n A 1 110 SER 110 137 137 SER SER A . n A 1 111 GLU 111 138 138 GLU GLU A . n A 1 112 LYS 112 139 139 LYS LYS A . n A 1 113 PRO 113 140 140 PRO PRO A . n A 1 114 LEU 114 141 141 LEU LEU A . n A 1 115 LEU 115 142 142 LEU LEU A . n A 1 116 ILE 116 143 143 ILE ILE A . n A 1 117 GLN 117 144 144 GLN GLN A . n A 1 118 GLU 118 145 145 GLU GLU A . n A 1 119 LEU 119 146 146 LEU LEU A . n A 1 120 TRP 120 147 147 TRP TRP A . n A 1 121 LYS 121 148 148 LYS LYS A . n A 1 122 PRO 122 149 149 PRO PRO A . n A 1 123 ARG 123 150 150 ARG ARG A . n A 1 124 GLU 124 151 151 GLU GLU A . n A 1 125 GLY 125 152 152 GLY GLY A . n A 1 126 LEU 126 153 153 LEU LEU A . n A 1 127 SER 127 154 154 SER SER A . n A 1 128 ARG 128 155 155 ARG ARG A . n A 1 129 ARG 129 156 156 ARG ARG A . n A 1 130 PHE 130 157 157 PHE PHE A . n A 1 131 GLU 131 158 158 GLU GLU A . n A 1 132 LEU 132 159 159 LEU LEU A . n A 1 133 ARG 133 160 160 ARG ARG A . n A 1 134 LYS 134 161 161 LYS LYS A . n A 1 135 ARG 135 162 162 ARG ARG A . n A 1 136 SER 136 163 163 SER SER A . n A 1 137 ASP 137 164 164 ASP ASP A . n A 1 138 VAL 138 165 165 VAL VAL A . n A 1 139 GLU 139 166 166 GLU GLU A . n A 1 140 GLU 140 167 167 GLU GLU A . n A 1 141 LEU 141 168 168 LEU LEU A . n A 1 142 ALA 142 169 169 ALA ALA A . n A 1 143 ALA 143 170 170 ALA ALA A . n A 1 144 LYS 144 171 171 LYS LYS A . n A 1 145 GLU 145 172 172 GLU GLU A . n A 1 146 VAL 146 173 173 VAL VAL A . n A 1 147 ASP 147 174 174 ASP ASP A . n A 1 148 THR 148 175 175 THR THR A . n A 1 149 ILE 149 176 176 ILE ILE A . n A 1 150 THR 150 177 177 THR THR A . n A 1 151 ALA 151 178 178 ALA ALA A . n A 1 152 GLY 152 179 179 GLY GLY A . n A 1 153 ILE 153 180 180 ILE ILE A . n A 1 154 ASN 154 181 181 ASN ASN A . n A 1 155 ALA 155 182 182 ALA ALA A . n A 1 156 GLN 156 183 183 GLN GLN A . n A 1 157 ALA 157 184 184 ALA ALA A . n A 1 158 ARG 158 185 185 ARG ARG A . n A 1 159 ARG 159 186 186 ARG ARG A . n A 1 160 LEU 160 187 187 LEU LEU A . n A 1 161 GLN 161 188 188 GLN GLN A . n A 1 162 ARG 162 189 189 ARG ARG A . n A 1 163 SER 163 190 ? ? ? A . n A 1 164 ARG 164 191 ? ? ? A . n A 1 165 ALA 165 192 ? ? ? A . n A 1 166 LYS 166 193 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 4910 ? 2 MORE -25 ? 2 'SSA (A^2)' 15010 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_554 -y,-x,-z-1/3 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -45.2033333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-30 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -19.3510 16.8260 -11.0410 0.1185 0.0624 0.0687 0.0418 -0.0472 -0.0296 3.6353 6.4479 5.8203 1.7564 -1.5147 0.1589 -0.0703 -0.2857 0.2126 0.1286 0.0502 -0.0217 -0.6647 -0.0906 0.0201 'X-RAY DIFFRACTION' 2 ? refined -23.0540 2.2820 -11.6070 0.1258 0.0988 0.0997 -0.0854 0.0707 -0.0582 2.4556 7.7802 5.2036 0.8479 0.2510 1.0756 -0.0651 -0.1477 0.1639 0.4100 -0.2331 0.0394 0.6199 -0.4153 0.2982 'X-RAY DIFFRACTION' 3 ? refined -27.0870 7.0640 -18.7040 0.1412 0.3996 0.1762 0.0356 -0.0481 -0.1095 0.2840 7.7201 9.7230 0.5852 -0.3457 1.7974 -0.1190 -0.1060 0.1571 0.4006 -0.1524 0.5032 0.2485 -1.4106 0.2714 'X-RAY DIFFRACTION' 4 ? refined -26.5180 -8.4030 -40.5620 0.1180 0.1218 0.1732 -0.0132 0.0444 -0.0077 3.1170 1.7362 12.6038 -0.8752 3.3903 0.7667 -0.0558 -0.0181 0.4526 0.1159 -0.3477 0.1070 0.2899 -0.7370 0.4036 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 41 A 71 ? A 14 A 44 'X-RAY DIFFRACTION' ? 2 2 A 74 A 142 ? A 47 A 115 'X-RAY DIFFRACTION' ? 3 3 A 143 A 165 ? A 116 A 138 'X-RAY DIFFRACTION' ? 4 4 A 166 A 189 ? A 139 A 162 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 autoSHARP phasing . ? 2 REFMAC refinement 5.5.0035 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 158 ? ? NH1 A ARG 160 ? ? 2.03 2 1 OE2 A GLU 145 ? ? O A HOH 202 ? ? 2.16 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 42 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -112.58 _pdbx_validate_torsion.psi 50.74 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 42 ? OG1 ? A THR 15 OG1 2 1 Y 1 A THR 42 ? CG2 ? A THR 15 CG2 3 1 Y 1 A THR 74 ? OG1 ? A THR 47 OG1 4 1 Y 1 A THR 74 ? CG2 ? A THR 47 CG2 5 1 Y 1 A GLN 127 ? CG ? A GLN 100 CG 6 1 Y 1 A GLN 127 ? CD ? A GLN 100 CD 7 1 Y 1 A GLN 127 ? OE1 ? A GLN 100 OE1 8 1 Y 1 A GLN 127 ? NE2 ? A GLN 100 NE2 9 1 Y 1 A ARG 150 ? CD ? A ARG 123 CD 10 1 Y 1 A ARG 150 ? NE ? A ARG 123 NE 11 1 Y 1 A ARG 150 ? CZ ? A ARG 123 CZ 12 1 Y 1 A ARG 150 ? NH1 ? A ARG 123 NH1 13 1 Y 1 A ARG 150 ? NH2 ? A ARG 123 NH2 14 1 Y 1 A ARG 186 ? NE ? A ARG 159 NE 15 1 Y 1 A ARG 186 ? CZ ? A ARG 159 CZ 16 1 Y 1 A ARG 186 ? NH1 ? A ARG 159 NH1 17 1 Y 1 A ARG 186 ? NH2 ? A ARG 159 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 28 ? A MET 1 2 1 Y 1 A HIS 29 ? A HIS 2 3 1 Y 1 A HIS 30 ? A HIS 3 4 1 Y 1 A HIS 31 ? A HIS 4 5 1 Y 1 A HIS 32 ? A HIS 5 6 1 Y 1 A HIS 33 ? A HIS 6 7 1 Y 1 A HIS 34 ? A HIS 7 8 1 Y 1 A SER 35 ? A SER 8 9 1 Y 1 A SER 36 ? A SER 9 10 1 Y 1 A GLY 37 ? A GLY 10 11 1 Y 1 A VAL 38 ? A VAL 11 12 1 Y 1 A ASP 39 ? A ASP 12 13 1 Y 1 A LEU 40 ? A LEU 13 14 1 Y 1 A VAL 72 ? A VAL 45 15 1 Y 1 A CYS 73 ? A CYS 46 16 1 Y 1 A GLN 118 ? A GLN 91 17 1 Y 1 A ALA 119 ? A ALA 92 18 1 Y 1 A GLY 120 ? A GLY 93 19 1 Y 1 A ASP 121 ? A ASP 94 20 1 Y 1 A ALA 122 ? A ALA 95 21 1 Y 1 A GLY 123 ? A GLY 96 22 1 Y 1 A GLN 124 ? A GLN 97 23 1 Y 1 A ARG 125 ? A ARG 98 24 1 Y 1 A SER 190 ? A SER 163 25 1 Y 1 A ARG 191 ? A ARG 164 26 1 Y 1 A ALA 192 ? A ALA 165 27 1 Y 1 A LYS 193 ? A LYS 166 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'LEAD (II) ION' PB 4 GLYCEROL GOL 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1 1 CL CL A . C 3 PB 1 194 1 PB PB A . D 3 PB 1 2 2 PB PB A . E 4 GOL 1 195 1 GOL GOL A . F 5 HOH 1 196 1 HOH HOH A . F 5 HOH 2 197 2 HOH HOH A . F 5 HOH 3 198 3 HOH HOH A . F 5 HOH 4 199 5 HOH HOH A . F 5 HOH 5 200 6 HOH HOH A . F 5 HOH 6 201 7 HOH HOH A . F 5 HOH 7 202 8 HOH HOH A . F 5 HOH 8 203 10 HOH HOH A . F 5 HOH 9 204 11 HOH HOH A . #