HEADER UNKNOWN FUNCTION 29-AUG-08 3EC9 TITLE CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (BTH_I0051) FROM BURKHOLDERIA TITLE 2 THAILANDENSIS E264 AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED NTF2-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS E264; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 GENE: YP_440611.1, BTH_I0051; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3EC9 1 REMARK SEQADV REVDAT 6 24-JUL-19 3EC9 1 REMARK LINK REVDAT 5 25-OCT-17 3EC9 1 REMARK REVDAT 4 13-JUL-11 3EC9 1 VERSN REVDAT 3 28-JUL-10 3EC9 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3EC9 1 VERSN REVDAT 1 09-SEP-08 3EC9 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NTF2-LIKE PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (YP_440611.1) FROM BURKHOLDERIA THAILANDENSIS E264 AT 1.60 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2031 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.874 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2278 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1513 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3105 ; 1.457 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3636 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 6.271 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;28.504 ;22.544 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ;12.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;10.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2682 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 526 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 426 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1651 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1071 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1178 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 239 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.359 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1461 ; 1.907 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 562 ; 0.518 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2253 ; 2.543 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 971 ; 4.172 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 852 ; 5.995 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4493 43.8152 16.6680 REMARK 3 T TENSOR REMARK 3 T11: -0.0077 T22: -0.0104 REMARK 3 T33: -0.0072 T12: 0.0122 REMARK 3 T13: 0.0011 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.3682 L22: 0.2121 REMARK 3 L33: 0.4526 L12: 0.1982 REMARK 3 L13: 0.0516 L23: 0.0441 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.0093 S13: 0.0116 REMARK 3 S21: 0.0090 S22: 0.0222 S23: 0.0612 REMARK 3 S31: -0.0120 S32: -0.0380 S33: -0.0402 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0203 51.4962 18.1544 REMARK 3 T TENSOR REMARK 3 T11: -0.0126 T22: -0.0111 REMARK 3 T33: -0.0078 T12: 0.0125 REMARK 3 T13: 0.0036 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.2940 L22: 0.4175 REMARK 3 L33: 0.5878 L12: 0.2098 REMARK 3 L13: 0.0171 L23: 0.0391 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0093 S13: 0.0265 REMARK 3 S21: 0.0018 S22: 0.0158 S23: -0.0574 REMARK 3 S31: 0.0093 S32: 0.0561 S33: -0.0277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 (3). ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 (4). ACETATE (ACT) IONS FROM THE CRYSTALLIZATION SOLUTION REMARK 3 AND A GLYCEROL (GOL) MOLECULE FROM CRYO SOLUTION REMARK 3 WERE MODELED. REMARK 4 REMARK 4 3EC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97932,0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 27.875 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 5.8250 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M CA(OAC)2, 20.0000% PEG-8000, REMARK 280 0.1M MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.92450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.74700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.01050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.74700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.92450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.01050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ASP A 7 REMARK 465 HIS A 8 REMARK 465 MSE A 9 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 ASN B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 ASP B 7 REMARK 465 HIS B 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 78 CD CE NZ REMARK 470 ARG A 94 CZ NH1 NH2 REMARK 470 MSE B 9 CG SE CE REMARK 470 LYS B 78 CD CE NZ REMARK 470 ARG B 94 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 11 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 11 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 62 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 134.79 -35.32 REMARK 500 VAL A 64 -70.11 -115.43 REMARK 500 ALA B 51 138.20 -36.87 REMARK 500 VAL B 64 -72.20 -113.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 143 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390600 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EC9 A 1 139 UNP Q2T2I4 Q2T2I4_BURTA 1 139 DBREF 3EC9 B 1 139 UNP Q2T2I4 Q2T2I4_BURTA 1 139 SEQADV 3EC9 GLY A 0 UNP Q2T2I4 EXPRESSION TAG SEQADV 3EC9 GLY B 0 UNP Q2T2I4 EXPRESSION TAG SEQRES 1 A 140 GLY MSE ARG ASN PRO SER GLU ASP HIS MSE MSE ARG THR SEQRES 2 A 140 PRO TYR GLN ILE VAL ALA ASP HIS TYR ALA ALA SER ASP SEQRES 3 A 140 ARG HIS ASP PRO ALA ALA MSE MSE ALA ASP ILE ALA PRO SEQRES 4 A 140 ALA ILE GLU TRP THR GLU MSE ALA GLY PHE PRO CYS ALA SEQRES 5 A 140 GLY THR TYR ARG SER ALA ASP GLU ILE VAL ARG ASN VAL SEQRES 6 A 140 PHE ARG ARG LEU GLY GLU GLU TRP ASP GLY TYR THR PHE SEQRES 7 A 140 LYS LEU ASP ALA LEU HIS ASP ALA GLY ASP THR VAL ILE SEQRES 8 A 140 GLY VAL GLY ARG TYR SER GLY THR TYR ARG ARG THR GLY SEQRES 9 A 140 LYS SER PHE GLU CYS ARG VAL ALA HIS VAL TRP ARG VAL SEQRES 10 A 140 ASP ALA GLY LYS ILE VAL HIS PHE GLU GLN PHE THR ASP SEQRES 11 A 140 THR LEU LEU VAL ALA GLN ALA MSE GLN PRO SEQRES 1 B 140 GLY MSE ARG ASN PRO SER GLU ASP HIS MSE MSE ARG THR SEQRES 2 B 140 PRO TYR GLN ILE VAL ALA ASP HIS TYR ALA ALA SER ASP SEQRES 3 B 140 ARG HIS ASP PRO ALA ALA MSE MSE ALA ASP ILE ALA PRO SEQRES 4 B 140 ALA ILE GLU TRP THR GLU MSE ALA GLY PHE PRO CYS ALA SEQRES 5 B 140 GLY THR TYR ARG SER ALA ASP GLU ILE VAL ARG ASN VAL SEQRES 6 B 140 PHE ARG ARG LEU GLY GLU GLU TRP ASP GLY TYR THR PHE SEQRES 7 B 140 LYS LEU ASP ALA LEU HIS ASP ALA GLY ASP THR VAL ILE SEQRES 8 B 140 GLY VAL GLY ARG TYR SER GLY THR TYR ARG ARG THR GLY SEQRES 9 B 140 LYS SER PHE GLU CYS ARG VAL ALA HIS VAL TRP ARG VAL SEQRES 10 B 140 ASP ALA GLY LYS ILE VAL HIS PHE GLU GLN PHE THR ASP SEQRES 11 B 140 THR LEU LEU VAL ALA GLN ALA MSE GLN PRO MODRES 3EC9 MSE A 10 MET SELENOMETHIONINE MODRES 3EC9 MSE A 32 MET SELENOMETHIONINE MODRES 3EC9 MSE A 33 MET SELENOMETHIONINE MODRES 3EC9 MSE A 45 MET SELENOMETHIONINE MODRES 3EC9 MSE A 137 MET SELENOMETHIONINE MODRES 3EC9 MSE B 9 MET SELENOMETHIONINE MODRES 3EC9 MSE B 10 MET SELENOMETHIONINE MODRES 3EC9 MSE B 32 MET SELENOMETHIONINE MODRES 3EC9 MSE B 33 MET SELENOMETHIONINE MODRES 3EC9 MSE B 45 MET SELENOMETHIONINE MODRES 3EC9 MSE B 137 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 32 16 HET MSE A 33 8 HET MSE A 45 8 HET MSE A 137 16 HET MSE B 9 5 HET MSE B 10 16 HET MSE B 32 16 HET MSE B 33 8 HET MSE B 45 8 HET MSE B 137 16 HET ACT A 140 4 HET ACT A 141 4 HET ACT B 140 4 HET ACT B 141 4 HET ACT B 142 4 HET GOL B 143 6 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 ACT 5(C2 H3 O2 1-) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *359(H2 O) HELIX 1 1 THR A 12 ARG A 26 1 15 HELIX 2 2 ASP A 28 ALA A 34 1 7 HELIX 3 3 SER A 56 VAL A 64 1 9 HELIX 4 4 VAL A 64 GLU A 71 1 8 HELIX 5 5 ASP A 129 GLN A 138 1 10 HELIX 6 6 THR B 12 ARG B 26 1 15 HELIX 7 7 ASP B 28 ALA B 34 1 7 HELIX 8 8 SER B 56 VAL B 64 1 9 HELIX 9 9 VAL B 64 GLU B 71 1 8 HELIX 10 10 ASP B 129 MSE B 137 1 9 SHEET 1 A 6 GLY A 52 TYR A 54 0 SHEET 2 A 6 ILE A 36 GLU A 44 -1 N TRP A 42 O TYR A 54 SHEET 3 A 6 LYS A 120 THR A 128 1 O PHE A 124 N THR A 43 SHEET 4 A 6 SER A 105 ASP A 117 -1 N ASP A 117 O LYS A 120 SHEET 5 A 6 THR A 88 TYR A 99 -1 N GLY A 91 O HIS A 112 SHEET 6 A 6 TRP A 72 ALA A 85 -1 N ASP A 73 O THR A 98 SHEET 1 B 6 GLY B 52 TYR B 54 0 SHEET 2 B 6 ILE B 36 GLU B 44 -1 N TRP B 42 O TYR B 54 SHEET 3 B 6 LYS B 120 THR B 128 1 O PHE B 124 N THR B 43 SHEET 4 B 6 SER B 105 ASP B 117 -1 N ALA B 111 O PHE B 127 SHEET 5 B 6 THR B 88 TYR B 99 -1 N VAL B 89 O TRP B 114 SHEET 6 B 6 TRP B 72 ALA B 85 -1 N ASP B 73 O THR B 98 LINK C MSE A 10 N ARG A 11 1555 1555 1.32 LINK C ALA A 31 N AMSE A 32 1555 1555 1.33 LINK C ALA A 31 N BMSE A 32 1555 1555 1.34 LINK C AMSE A 32 N MSE A 33 1555 1555 1.33 LINK C BMSE A 32 N MSE A 33 1555 1555 1.34 LINK C MSE A 33 N ALA A 34 1555 1555 1.34 LINK C GLU A 44 N MSE A 45 1555 1555 1.34 LINK C MSE A 45 N ALA A 46 1555 1555 1.34 LINK C ALA A 136 N AMSE A 137 1555 1555 1.34 LINK C ALA A 136 N BMSE A 137 1555 1555 1.33 LINK C AMSE A 137 N AGLN A 138 1555 1555 1.33 LINK C BMSE A 137 N BGLN A 138 1555 1555 1.32 LINK C MSE B 9 N AMSE B 10 1555 1555 1.33 LINK C MSE B 9 N BMSE B 10 1555 1555 1.33 LINK C AMSE B 10 N AARG B 11 1555 1555 1.32 LINK C BMSE B 10 N BARG B 11 1555 1555 1.34 LINK C ALA B 31 N AMSE B 32 1555 1555 1.33 LINK C ALA B 31 N BMSE B 32 1555 1555 1.33 LINK C AMSE B 32 N MSE B 33 1555 1555 1.34 LINK C BMSE B 32 N MSE B 33 1555 1555 1.34 LINK C MSE B 33 N ALA B 34 1555 1555 1.32 LINK C GLU B 44 N MSE B 45 1555 1555 1.33 LINK C MSE B 45 N ALA B 46 1555 1555 1.34 LINK C ALA B 136 N AMSE B 137 1555 1555 1.33 LINK C ALA B 136 N BMSE B 137 1555 1555 1.34 LINK C AMSE B 137 N GLN B 138 1555 1555 1.33 LINK C BMSE B 137 N GLN B 138 1555 1555 1.33 SITE 1 AC1 4 HIS A 20 SER A 24 PHE A 65 PHE A 124 SITE 1 AC2 5 GLU A 44 PHE A 65 TYR A 95 PHE A 124 SITE 2 AC2 5 GLN A 126 SITE 1 AC3 5 GLU B 44 PHE B 65 TYR B 95 PHE B 124 SITE 2 AC3 5 GLN B 126 SITE 1 AC4 2 HOH A 276 GLN B 138 SITE 1 AC5 5 ASP A 25 ARG A 26 HOH A 177 ASP B 28 SITE 2 AC5 5 HOH B 273 SITE 1 AC6 8 HIS B 20 SER B 24 TRP B 42 PHE B 65 SITE 2 AC6 8 PHE B 77 TRP B 114 PHE B 124 HOH B 325 CRYST1 51.849 52.021 111.494 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008969 0.00000 HETATM 1 N MSE A 10 12.335 41.907 -8.833 1.00 29.58 N HETATM 2 CA MSE A 10 12.636 41.141 -7.584 1.00 23.30 C HETATM 3 C MSE A 10 13.431 42.010 -6.591 1.00 21.74 C HETATM 4 O MSE A 10 14.380 42.700 -6.983 1.00 26.63 O HETATM 5 CB MSE A 10 13.477 39.919 -7.930 1.00 19.89 C HETATM 6 CG MSE A 10 12.815 38.934 -8.964 1.00 20.88 C HETATM 7 SE MSE A 10 11.473 37.954 -8.024 0.75 16.04 SE HETATM 8 CE MSE A 10 12.594 36.999 -6.744 1.00 20.38 C