HEADER HYDROLASE 29-AUG-08 3ECG TITLE HIGH RESOLUTION HIV-2 PROTEASE STRUCTURE IN COMPLEX WITH ANTIVIRAL TITLE 2 INHIBITOR GRL-98065 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.23.47; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SOURCE 3 ROD); SOURCE 4 ORGANISM_TAXID: 11720; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HIV-2, ASPARTIC PROTEASE, INHIBITOR, PROTEASE-INHIBITOR COMPLEX, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.Y.KOVALEVSKY,I.T.WEBER REVDAT 3 01-NOV-23 3ECG 1 REMARK HETSYN LINK REVDAT 2 30-DEC-08 3ECG 1 JRNL VERSN REVDAT 1 16-SEP-08 3ECG 0 JRNL AUTH A.Y.KOVALEVSKY,J.M.LOUIS,A.ANIANA,A.K.GHOSH,I.T.WEBER JRNL TITL STRUCTURAL EVIDENCE FOR EFFECTIVENESS OF DARUNAVIR AND TWO JRNL TITL 2 RELATED ANTIVIRAL INHIBITORS AGAINST HIV-2 PROTEASE JRNL REF J.MOL.BIOL. V. 384 178 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18834890 JRNL DOI 10.1016/J.JMB.2008.09.031 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.145 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.142 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2561 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 51263 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.125 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.122 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 2042 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 40772 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1764.8 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1556.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 11 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 16672 REMARK 3 NUMBER OF RESTRAINTS : 20855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 ANGLE DISTANCES (A) : 0.030 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.032 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.065 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.073 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.037 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.056 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.096 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) BY 5% REMARK 4 REMARK 4 3ECG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IEN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6-0.7M IMIDAZOLE, 0.12-0.14M REMARK 280 ZN(OAC)2 BUFFER, 1.25-2M NACL, PH 5.75, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.69800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.48200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.69800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.48200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -331.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1005 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1159 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD2 REMARK 620 2 HOH A1027 O 108.9 REMARK 620 3 HOH A1028 O 108.2 82.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 41 OD1 REMARK 620 2 HOH A1067 O 81.8 REMARK 620 3 HOH A1088 O 95.3 165.3 REMARK 620 4 HOH A1104 O 81.6 73.6 120.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 411 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE2 REMARK 620 2 HOH A1009 O 115.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 65 OE1 REMARK 620 2 GLU A 65 OE1 45.3 REMARK 620 3 IMD A 306 N3 116.8 89.7 REMARK 620 4 HOH A1005 O 121.9 104.5 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD2 REMARK 620 2 HOH A1032 O 110.6 REMARK 620 3 HOH A1033 O 115.1 115.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 99 OXT REMARK 620 2 IMD A 304 N3 108.6 REMARK 620 3 HOH A1007 O 101.1 113.1 REMARK 620 4 HOH A1008 O 119.7 117.1 95.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 121 OE2 REMARK 620 2 IMD B 301 N3 111.0 REMARK 620 3 IMD B 302 N3 96.9 110.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 130 OD2 REMARK 620 2 IMD B 303 N3 108.6 REMARK 620 3 HOH B1001 O 103.9 117.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 410 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 130 OD2 REMARK 620 2 HOH B1001 O 97.3 REMARK 620 3 HOH B1004 O 129.0 106.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 158 OE1 REMARK 620 2 HOH B1010 O 137.3 REMARK 620 3 HOH B1144 O 103.3 115.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 165 OE1 REMARK 620 2 HOH B1002 O 71.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 065 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBZ RELATED DB: PDB REMARK 900 RELATED ID: 3EC0 RELATED DB: PDB DBREF 3ECG A 1 99 UNP P04584 POL_HV2RO 514 612 DBREF 3ECG B 101 199 UNP P04584 POL_HV2RO 514 612 SEQRES 1 A 99 PRO GLN PHE SER LEU TRP LYS ARG PRO VAL VAL THR ALA SEQRES 2 A 99 TYR ILE GLU GLY GLN PRO VAL GLU VAL LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP SER ILE VAL ALA GLY ILE GLU LEU GLY SEQRES 4 A 99 ASN ASN TYR SER PRO LYS ILE VAL GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE ILE ASN THR LYS GLU TYR LYS ASN VAL GLU ILE GLU SEQRES 6 A 99 VAL LEU ASN LYS LYS VAL ARG ALA THR ILE MET THR GLY SEQRES 7 A 99 ASP THR PRO ILE ASN ILE PHE GLY ARG ASN ILE LEU THR SEQRES 8 A 99 ALA LEU GLY MET SER LEU ASN LEU SEQRES 1 B 99 PRO GLN PHE SER LEU TRP LYS ARG PRO VAL VAL THR ALA SEQRES 2 B 99 TYR ILE GLU GLY GLN PRO VAL GLU VAL LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP SER ILE VAL ALA GLY ILE GLU LEU GLY SEQRES 4 B 99 ASN ASN TYR SER PRO LYS ILE VAL GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE ILE ASN THR LYS GLU TYR LYS ASN VAL GLU ILE GLU SEQRES 6 B 99 VAL LEU ASN LYS LYS VAL ARG ALA THR ILE MET THR GLY SEQRES 7 B 99 ASP THR PRO ILE ASN ILE PHE GLY ARG ASN ILE LEU THR SEQRES 8 B 99 ALA LEU GLY MET SER LEU ASN LEU HET 065 A 201 40 HET IMD A 304 5 HET IMD A 306 5 HET ZN A 402 1 HET ZN A 404 1 HET ZN A 406 1 HET ZN A 407 1 HET ZN A 411 1 HET CL A 503 1 HET CL A 507 1 HET CL A 509 1 HET NA A 601 1 HET IMD B 301 5 HET IMD B 302 5 HET IMD B 303 5 HET IMD B 305 5 HET ZN B 401 1 HET ZN B 403 1 HET ZN B 405 1 HET ZN B 408 1 HET ZN B 409 1 HET ZN B 410 1 HET CL B 501 1 HET CL B 502 1 HET CL B 504 1 HET CL B 505 1 HET CL B 506 1 HET CL B 508 1 HETNAM 065 (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(2S,3R)-3- HETNAM 2 065 HYDROXY-4-(N-ISOBUTYLBENZO[D][1,3]DIOXOLE-5- HETNAM 3 065 SULFONAMIDO)-1-PHENYLBUTAN-2-YLCARBAMATE HETNAM IMD IMIDAZOLE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN 065 RL-98065; [(1R,5S,6R)-2,8-DIOXABICYCLO[3.3.0]OCT-6- HETSYN 2 065 YL]N-[(2S,3R)-4-[(3,4-METHYLENEDIOXYPHENYL)SULFONYL- HETSYN 3 065 (2-METHYLPROPYL)AMINO]-3-HYDROXY-1-PHENYL-BUTAN-2-YL] HETSYN 4 065 CARBAMATE FORMUL 3 065 C28 H36 N2 O9 S FORMUL 4 IMD 6(C3 H5 N2 1+) FORMUL 6 ZN 11(ZN 2+) FORMUL 11 CL 9(CL 1-) FORMUL 14 NA NA 1+ FORMUL 31 HOH *203(H2 O) HELIX 1 1 GLY A 86 LEU A 93 1 8 HELIX 2 2 GLY B 186 GLY B 194 1 9 SHEET 1 A 4 GLN A 2 PHE A 3 0 SHEET 2 A 4 SER B 196 ASN B 198 -1 O LEU B 197 N PHE A 3 SHEET 3 A 4 SER A 96 ASN A 98 -1 N ASN A 98 O SER B 196 SHEET 4 A 4 GLN B 102 PHE B 103 -1 O PHE B 103 N LEU A 97 SHEET 1 B 8 SER A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 VAL A 66 -1 O THR A 56 N LYS A 45 SHEET 3 B 8 LYS A 69 GLY A 78 -1 O VAL A 71 N ILE A 64 SHEET 4 B 8 ILE A 32 VAL A 33 1 N VAL A 33 O MET A 76 SHEET 5 B 8 ILE A 84 PHE A 85 -1 O ILE A 84 N ILE A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O PHE A 85 SHEET 7 B 8 VAL A 10 ILE A 15 -1 N ALA A 13 O VAL A 20 SHEET 8 B 8 GLY A 52 VAL A 66 -1 O GLU A 65 N TYR A 14 SHEET 1 C 8 SER B 143 GLY B 149 0 SHEET 2 C 8 GLY B 152 VAL B 166 -1 O GLU B 158 N SER B 143 SHEET 3 C 8 LYS B 169 THR B 177 -1 O ILE B 175 N TYR B 159 SHEET 4 C 8 ILE B 132 VAL B 133 1 N VAL B 133 O MET B 176 SHEET 5 C 8 ILE B 184 PHE B 185 -1 O ILE B 184 N ILE B 132 SHEET 6 C 8 GLN B 118 LEU B 124 1 N LEU B 123 O PHE B 185 SHEET 7 C 8 VAL B 110 ILE B 115 -1 N VAL B 111 O VAL B 122 SHEET 8 C 8 GLY B 152 VAL B 166 -1 O GLU B 165 N TYR B 114 LINK OD2 ASP A 30 ZN ZN A 402 1555 1555 1.93 LINK OD1 ASN A 41 NA NA A 601 1555 1555 2.37 LINK OE2 GLU A 63 ZN ZN A 411 1555 1555 1.93 LINK OE1AGLU A 65 ZN ZN A 407 1555 1555 2.39 LINK OE1BGLU A 65 ZN ZN A 407 1555 1555 1.99 LINK OD2 ASP A 79 ZN ZN A 406 1555 1555 1.98 LINK OXT LEU A 99 ZN ZN A 404 1555 1555 2.09 LINK N3 IMD A 304 ZN ZN A 404 1555 1555 1.90 LINK N3 IMD A 306 ZN ZN A 407 1555 1555 2.01 LINK ZN ZN A 402 O HOH A1027 1555 1555 1.94 LINK ZN ZN A 402 O HOH A1028 1555 1555 2.01 LINK ZN ZN A 404 O HOH A1007 1555 1555 2.19 LINK ZN ZN A 404 O HOH A1008 1555 1555 1.84 LINK ZN ZN A 406 O HOH A1032 1555 1555 2.27 LINK ZN ZN A 406 O HOH A1033 1555 1555 2.08 LINK ZN ZN A 407 O HOH A1005 1555 1555 2.07 LINK ZN ZN A 411 O HOH A1009 1555 1555 2.03 LINK NA NA A 601 O HOH A1067 1555 1555 2.75 LINK NA NA A 601 O HOH A1088 1555 1555 2.30 LINK NA NA A 601 O HOH A1104 1555 1555 2.42 LINK OE2 GLU B 121 ZN ZN B 401 1555 1555 1.93 LINK OD2 ASP B 130 ZN ZN B 403 1555 1555 1.99 LINK OD2 ASP B 130 ZN ZN B 410 1555 1555 2.14 LINK OE1 GLU B 158 ZN ZN B 409 1555 1555 2.08 LINK OE1 GLU B 165 ZN ZN B 408 1555 1555 2.40 LINK N3 IMD B 301 ZN ZN B 401 1555 1555 2.01 LINK N3 IMD B 302 ZN ZN B 401 1555 1555 1.98 LINK N3 IMD B 303 ZN ZN B 403 1555 1555 1.91 LINK N3 IMD B 305 ZN ZN B 405 1555 1555 2.09 LINK ZN ZN B 403 O HOH B1001 1555 1555 1.96 LINK ZN ZN B 408 O HOH B1002 1555 1555 2.08 LINK ZN ZN B 409 O HOH B1010 1555 1555 2.16 LINK ZN ZN B 409 O HOH B1144 1555 1555 2.18 LINK ZN ZN B 410 O HOH B1001 1555 1555 2.00 LINK ZN ZN B 410 O HOH B1004 1555 1555 2.08 SITE 1 AC1 21 ASP A 25 GLY A 27 ALA A 28 ASP A 30 SITE 2 AC1 21 ILE A 32 GLY A 48 GLY A 49 PRO A 81 SITE 3 AC1 21 ILE A 82 ILE A 84 HOH A1017 HOH A1083 SITE 4 AC1 21 ASP B 125 GLY B 127 ALA B 128 ASP B 129 SITE 5 AC1 21 ASP B 130 ILE B 132 GLY B 148 GLY B 149 SITE 6 AC1 21 ILE B 150 SITE 1 AC2 6 GLN A 2 PHE A 3 LEU A 99 ZN A 404 SITE 2 AC2 6 CL A 509 PRO B 101 SITE 1 AC3 8 TYR A 14 GLU A 16 GLY A 17 GLU A 63 SITE 2 AC3 8 GLU A 65 ZN A 407 ZN A 411 HOH A1011 SITE 1 AC4 5 ASP A 30 CL A 503 HOH A1026 HOH A1027 SITE 2 AC4 5 HOH A1028 SITE 1 AC5 5 LEU A 99 IMD A 304 CL A 509 HOH A1007 SITE 2 AC5 5 HOH A1008 SITE 1 AC6 4 ASP A 79 HOH A1032 HOH A1033 GLU B 137 SITE 1 AC7 3 GLU A 65 IMD A 306 HOH A1005 SITE 1 AC8 6 GLU A 63 GLU A 65 IMD A 306 CL A 507 SITE 2 AC8 6 HOH A1009 HOH A1011 SITE 1 AC9 4 ASP A 30 ZN A 402 HOH A1026 LYS B 157 SITE 1 BC1 5 GLU A 63 GLU A 65 ASN A 68 LYS A 69 SITE 2 BC1 5 ZN A 411 SITE 1 BC2 5 LEU A 99 IMD A 304 ZN A 404 HOH A1008 SITE 2 BC2 5 HOH A1101 SITE 1 BC3 7 ASN A 40 ASN A 41 PRO A 44 HOH A1067 SITE 2 BC3 7 HOH A1088 HOH A1104 ASN B 140 SITE 1 BC4 6 GLU B 121 ILE B 146 ASN B 155 ASP B 179 SITE 2 BC4 6 IMD B 302 ZN B 401 SITE 1 BC5 6 GLU B 121 PHE B 153 ASP B 179 IMD B 301 SITE 2 BC5 6 ZN B 401 HOH B1169 SITE 1 BC6 6 ASP B 130 ILE B 146 ZN B 403 ZN B 410 SITE 2 BC6 6 CL B 501 CL B 502 SITE 1 BC7 7 PRO A 81 TRP B 106 ZN B 405 CL B 505 SITE 2 BC7 7 CL B 506 CL B 508 HOH B1062 SITE 1 BC8 4 GLU B 121 ASP B 179 IMD B 301 IMD B 302 SITE 1 BC9 5 ASP B 130 IMD B 303 ZN B 410 CL B 502 SITE 2 BC9 5 HOH B1001 SITE 1 CC1 4 IMD B 305 CL B 505 CL B 506 CL B 508 SITE 1 CC2 4 GLU B 165 CL B 504 HOH B1002 HOH B1003 SITE 1 CC3 4 GLU B 158 HOH B1010 HOH B1113 HOH B1144 SITE 1 CC4 5 ASP B 130 IMD B 303 ZN B 403 HOH B1001 SITE 2 CC4 5 HOH B1004 SITE 1 CC5 6 THR B 112 LYS B 145 ILE B 146 IMD B 303 SITE 2 CC5 6 HOH B1053 HOH B1092 SITE 1 CC6 4 LYS B 107 GLY B 148 IMD B 303 ZN B 403 SITE 1 CC7 2 ZN B 408 HOH B1003 SITE 1 CC8 8 SER B 104 LEU B 105 TRP B 106 LYS B 107 SITE 2 CC8 8 IMD B 305 ZN B 405 CL B 506 CL B 508 SITE 1 CC9 3 IMD B 305 ZN B 405 CL B 505 SITE 1 DC1 4 ARG A 8 IMD B 305 ZN B 405 CL B 505 CRYST1 105.396 30.964 55.625 90.00 91.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009488 0.000000 0.000230 0.00000 SCALE2 0.000000 0.032296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017983 0.00000