HEADER OXIDOREDUCTASE 03-SEP-08 3EDM TITLE CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM AGROBACTERIUM TITLE 2 TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT CHAIN DEHYDROGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: AGR_L_3556, ATU3026; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, DEHYDROGENASE, OXIDOREDUCTASE, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,S.CHANG,R.ROMERO,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 3EDM 1 REMARK REVDAT 6 10-FEB-21 3EDM 1 AUTHOR JRNL REVDAT 5 14-NOV-18 3EDM 1 AUTHOR REVDAT 4 25-OCT-17 3EDM 1 REMARK REVDAT 3 13-JUL-11 3EDM 1 VERSN REVDAT 2 24-FEB-09 3EDM 1 VERSN REVDAT 1 30-SEP-08 3EDM 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,S.CHANG,R.ROMERO,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM JRNL TITL 2 AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2311 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.89000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.273 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6356 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8608 ; 1.543 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 879 ; 6.075 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;32.484 ;23.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 976 ;15.957 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.024 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1024 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4741 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4315 ; 0.786 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6773 ; 1.493 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2041 ; 2.581 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1831 ; 4.206 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 43.783 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : 0.47200 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 200MM SODIUM FORMATE, PH REMARK 280 7.0, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.25050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.25050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 THR A 191 REMARK 465 PHE A 192 REMARK 465 HIS A 193 REMARK 465 ASP A 194 REMARK 465 THR A 195 REMARK 465 PHE A 196 REMARK 465 THR A 197 REMARK 465 LYS A 198 REMARK 465 PRO A 199 REMARK 465 GLU A 200 REMARK 465 VAL A 201 REMARK 465 ARG A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 465 VAL A 205 REMARK 465 ALA A 206 REMARK 465 GLY A 207 REMARK 465 ALA A 208 REMARK 465 THR A 209 REMARK 465 SER A 210 REMARK 465 LEU A 211 REMARK 465 LYS A 212 REMARK 465 GLU A 250 REMARK 465 GLY A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 PHE B 192 REMARK 465 HIS B 193 REMARK 465 ASP B 194 REMARK 465 THR B 195 REMARK 465 PHE B 196 REMARK 465 THR B 197 REMARK 465 LYS B 198 REMARK 465 PRO B 199 REMARK 465 GLU B 200 REMARK 465 VAL B 201 REMARK 465 ARG B 202 REMARK 465 GLU B 203 REMARK 465 ARG B 204 REMARK 465 VAL B 205 REMARK 465 ALA B 206 REMARK 465 GLY B 207 REMARK 465 ALA B 208 REMARK 465 THR B 209 REMARK 465 SER B 210 REMARK 465 LEU B 211 REMARK 465 LYS B 212 REMARK 465 GLU B 250 REMARK 465 GLY B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 MET C -1 REMARK 465 SER C 0 REMARK 465 LEU C 1 REMARK 465 GLY C 186 REMARK 465 MET C 187 REMARK 465 ILE C 188 REMARK 465 SER C 189 REMARK 465 THR C 190 REMARK 465 THR C 191 REMARK 465 PHE C 192 REMARK 465 HIS C 193 REMARK 465 ASP C 194 REMARK 465 THR C 195 REMARK 465 PHE C 196 REMARK 465 THR C 197 REMARK 465 LYS C 198 REMARK 465 PRO C 199 REMARK 465 GLU C 200 REMARK 465 VAL C 201 REMARK 465 ARG C 202 REMARK 465 GLU C 203 REMARK 465 ARG C 204 REMARK 465 VAL C 205 REMARK 465 ALA C 206 REMARK 465 GLY C 207 REMARK 465 ALA C 208 REMARK 465 THR C 209 REMARK 465 SER C 210 REMARK 465 LEU C 211 REMARK 465 LYS C 212 REMARK 465 ARG C 213 REMARK 465 GLU C 214 REMARK 465 GLY C 245 REMARK 465 VAL C 246 REMARK 465 LEU C 247 REMARK 465 PHE C 248 REMARK 465 SER C 249 REMARK 465 GLU C 250 REMARK 465 GLY C 251 REMARK 465 HIS C 252 REMARK 465 HIS C 253 REMARK 465 HIS C 254 REMARK 465 HIS C 255 REMARK 465 HIS C 256 REMARK 465 HIS C 257 REMARK 465 MET D -1 REMARK 465 SER D 0 REMARK 465 LEU D 1 REMARK 465 ALA D 40 REMARK 465 GLY D 186 REMARK 465 MET D 187 REMARK 465 ILE D 188 REMARK 465 SER D 189 REMARK 465 THR D 190 REMARK 465 THR D 191 REMARK 465 PHE D 192 REMARK 465 HIS D 193 REMARK 465 ASP D 194 REMARK 465 THR D 195 REMARK 465 PHE D 196 REMARK 465 THR D 197 REMARK 465 LYS D 198 REMARK 465 PRO D 199 REMARK 465 GLU D 200 REMARK 465 VAL D 201 REMARK 465 ARG D 202 REMARK 465 GLU D 203 REMARK 465 ARG D 204 REMARK 465 VAL D 205 REMARK 465 ALA D 206 REMARK 465 GLY D 207 REMARK 465 ALA D 208 REMARK 465 THR D 209 REMARK 465 SER D 210 REMARK 465 LEU D 211 REMARK 465 LYS D 212 REMARK 465 ARG D 213 REMARK 465 GLU D 214 REMARK 465 GLY D 245 REMARK 465 VAL D 246 REMARK 465 LEU D 247 REMARK 465 PHE D 248 REMARK 465 SER D 249 REMARK 465 GLU D 250 REMARK 465 GLY D 251 REMARK 465 HIS D 252 REMARK 465 HIS D 253 REMARK 465 HIS D 254 REMARK 465 HIS D 255 REMARK 465 HIS D 256 REMARK 465 HIS D 257 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 THR B 191 OG1 CG2 REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 ARG C 16 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 17 CG OD1 OD2 REMARK 470 GLU C 42 CG CD OE1 OE2 REMARK 470 GLN D 2 CG CD OE1 NE2 REMARK 470 ARG D 16 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 42 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN C 143 OD2 ASP C 147 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 4.91 -66.17 REMARK 500 ILE A 96 -67.97 65.71 REMARK 500 SER A 141 -149.94 -108.19 REMARK 500 SER A 142 143.75 -174.31 REMARK 500 ALA B 14 4.82 -64.41 REMARK 500 ILE B 96 -66.25 65.77 REMARK 500 SER B 141 -147.34 -101.90 REMARK 500 SER B 142 150.61 179.84 REMARK 500 ASP C 17 -114.82 33.36 REMARK 500 ILE C 96 -61.52 65.66 REMARK 500 ASP D 17 -115.97 46.70 REMARK 500 ILE D 96 -54.19 68.41 REMARK 500 SER D 141 -162.72 -105.48 REMARK 500 ASN D 243 86.54 -66.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10049O RELATED DB: TARGETDB DBREF 3EDM A 2 249 UNP A9CEK0 A9CEK0_AGRT5 2 249 DBREF 3EDM B 2 249 UNP A9CEK0 A9CEK0_AGRT5 2 249 DBREF 3EDM C 2 249 UNP A9CEK0 A9CEK0_AGRT5 2 249 DBREF 3EDM D 2 249 UNP A9CEK0 A9CEK0_AGRT5 2 249 SEQADV 3EDM MET A -1 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM SER A 0 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM LEU A 1 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM GLU A 250 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM GLY A 251 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS A 252 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS A 253 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS A 254 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS A 255 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS A 256 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS A 257 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM MET B -1 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM SER B 0 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM LEU B 1 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM GLU B 250 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM GLY B 251 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS B 252 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS B 253 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS B 254 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS B 255 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS B 256 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS B 257 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM MET C -1 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM SER C 0 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM LEU C 1 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM GLU C 250 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM GLY C 251 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS C 252 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS C 253 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS C 254 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS C 255 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS C 256 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS C 257 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM MET D -1 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM SER D 0 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM LEU D 1 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM GLU D 250 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM GLY D 251 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS D 252 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS D 253 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS D 254 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS D 255 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS D 256 UNP A9CEK0 EXPRESSION TAG SEQADV 3EDM HIS D 257 UNP A9CEK0 EXPRESSION TAG SEQRES 1 A 259 MET SER LEU GLN ARG PHE THR ASN ARG THR ILE VAL VAL SEQRES 2 A 259 ALA GLY ALA GLY ARG ASP ILE GLY ARG ALA CYS ALA ILE SEQRES 3 A 259 ARG PHE ALA GLN GLU GLY ALA ASN VAL VAL LEU THR TYR SEQRES 4 A 259 ASN GLY ALA ALA GLU GLY ALA ALA THR ALA VAL ALA GLU SEQRES 5 A 259 ILE GLU LYS LEU GLY ARG SER ALA LEU ALA ILE LYS ALA SEQRES 6 A 259 ASP LEU THR ASN ALA ALA GLU VAL GLU ALA ALA ILE SER SEQRES 7 A 259 ALA ALA ALA ASP LYS PHE GLY GLU ILE HIS GLY LEU VAL SEQRES 8 A 259 HIS VAL ALA GLY GLY LEU ILE ALA ARG LYS THR ILE ALA SEQRES 9 A 259 GLU MET ASP GLU ALA PHE TRP HIS GLN VAL LEU ASP VAL SEQRES 10 A 259 ASN LEU THR SER LEU PHE LEU THR ALA LYS THR ALA LEU SEQRES 11 A 259 PRO LYS MET ALA LYS GLY GLY ALA ILE VAL THR PHE SER SEQRES 12 A 259 SER GLN ALA GLY ARG ASP GLY GLY GLY PRO GLY ALA LEU SEQRES 13 A 259 ALA TYR ALA THR SER LYS GLY ALA VAL MET THR PHE THR SEQRES 14 A 259 ARG GLY LEU ALA LYS GLU VAL GLY PRO LYS ILE ARG VAL SEQRES 15 A 259 ASN ALA VAL CYS PRO GLY MET ILE SER THR THR PHE HIS SEQRES 16 A 259 ASP THR PHE THR LYS PRO GLU VAL ARG GLU ARG VAL ALA SEQRES 17 A 259 GLY ALA THR SER LEU LYS ARG GLU GLY SER SER GLU ASP SEQRES 18 A 259 VAL ALA GLY LEU VAL ALA PHE LEU ALA SER ASP ASP ALA SEQRES 19 A 259 ALA TYR VAL THR GLY ALA CYS TYR ASP ILE ASN GLY GLY SEQRES 20 A 259 VAL LEU PHE SER GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 259 MET SER LEU GLN ARG PHE THR ASN ARG THR ILE VAL VAL SEQRES 2 B 259 ALA GLY ALA GLY ARG ASP ILE GLY ARG ALA CYS ALA ILE SEQRES 3 B 259 ARG PHE ALA GLN GLU GLY ALA ASN VAL VAL LEU THR TYR SEQRES 4 B 259 ASN GLY ALA ALA GLU GLY ALA ALA THR ALA VAL ALA GLU SEQRES 5 B 259 ILE GLU LYS LEU GLY ARG SER ALA LEU ALA ILE LYS ALA SEQRES 6 B 259 ASP LEU THR ASN ALA ALA GLU VAL GLU ALA ALA ILE SER SEQRES 7 B 259 ALA ALA ALA ASP LYS PHE GLY GLU ILE HIS GLY LEU VAL SEQRES 8 B 259 HIS VAL ALA GLY GLY LEU ILE ALA ARG LYS THR ILE ALA SEQRES 9 B 259 GLU MET ASP GLU ALA PHE TRP HIS GLN VAL LEU ASP VAL SEQRES 10 B 259 ASN LEU THR SER LEU PHE LEU THR ALA LYS THR ALA LEU SEQRES 11 B 259 PRO LYS MET ALA LYS GLY GLY ALA ILE VAL THR PHE SER SEQRES 12 B 259 SER GLN ALA GLY ARG ASP GLY GLY GLY PRO GLY ALA LEU SEQRES 13 B 259 ALA TYR ALA THR SER LYS GLY ALA VAL MET THR PHE THR SEQRES 14 B 259 ARG GLY LEU ALA LYS GLU VAL GLY PRO LYS ILE ARG VAL SEQRES 15 B 259 ASN ALA VAL CYS PRO GLY MET ILE SER THR THR PHE HIS SEQRES 16 B 259 ASP THR PHE THR LYS PRO GLU VAL ARG GLU ARG VAL ALA SEQRES 17 B 259 GLY ALA THR SER LEU LYS ARG GLU GLY SER SER GLU ASP SEQRES 18 B 259 VAL ALA GLY LEU VAL ALA PHE LEU ALA SER ASP ASP ALA SEQRES 19 B 259 ALA TYR VAL THR GLY ALA CYS TYR ASP ILE ASN GLY GLY SEQRES 20 B 259 VAL LEU PHE SER GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 259 MET SER LEU GLN ARG PHE THR ASN ARG THR ILE VAL VAL SEQRES 2 C 259 ALA GLY ALA GLY ARG ASP ILE GLY ARG ALA CYS ALA ILE SEQRES 3 C 259 ARG PHE ALA GLN GLU GLY ALA ASN VAL VAL LEU THR TYR SEQRES 4 C 259 ASN GLY ALA ALA GLU GLY ALA ALA THR ALA VAL ALA GLU SEQRES 5 C 259 ILE GLU LYS LEU GLY ARG SER ALA LEU ALA ILE LYS ALA SEQRES 6 C 259 ASP LEU THR ASN ALA ALA GLU VAL GLU ALA ALA ILE SER SEQRES 7 C 259 ALA ALA ALA ASP LYS PHE GLY GLU ILE HIS GLY LEU VAL SEQRES 8 C 259 HIS VAL ALA GLY GLY LEU ILE ALA ARG LYS THR ILE ALA SEQRES 9 C 259 GLU MET ASP GLU ALA PHE TRP HIS GLN VAL LEU ASP VAL SEQRES 10 C 259 ASN LEU THR SER LEU PHE LEU THR ALA LYS THR ALA LEU SEQRES 11 C 259 PRO LYS MET ALA LYS GLY GLY ALA ILE VAL THR PHE SER SEQRES 12 C 259 SER GLN ALA GLY ARG ASP GLY GLY GLY PRO GLY ALA LEU SEQRES 13 C 259 ALA TYR ALA THR SER LYS GLY ALA VAL MET THR PHE THR SEQRES 14 C 259 ARG GLY LEU ALA LYS GLU VAL GLY PRO LYS ILE ARG VAL SEQRES 15 C 259 ASN ALA VAL CYS PRO GLY MET ILE SER THR THR PHE HIS SEQRES 16 C 259 ASP THR PHE THR LYS PRO GLU VAL ARG GLU ARG VAL ALA SEQRES 17 C 259 GLY ALA THR SER LEU LYS ARG GLU GLY SER SER GLU ASP SEQRES 18 C 259 VAL ALA GLY LEU VAL ALA PHE LEU ALA SER ASP ASP ALA SEQRES 19 C 259 ALA TYR VAL THR GLY ALA CYS TYR ASP ILE ASN GLY GLY SEQRES 20 C 259 VAL LEU PHE SER GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 D 259 MET SER LEU GLN ARG PHE THR ASN ARG THR ILE VAL VAL SEQRES 2 D 259 ALA GLY ALA GLY ARG ASP ILE GLY ARG ALA CYS ALA ILE SEQRES 3 D 259 ARG PHE ALA GLN GLU GLY ALA ASN VAL VAL LEU THR TYR SEQRES 4 D 259 ASN GLY ALA ALA GLU GLY ALA ALA THR ALA VAL ALA GLU SEQRES 5 D 259 ILE GLU LYS LEU GLY ARG SER ALA LEU ALA ILE LYS ALA SEQRES 6 D 259 ASP LEU THR ASN ALA ALA GLU VAL GLU ALA ALA ILE SER SEQRES 7 D 259 ALA ALA ALA ASP LYS PHE GLY GLU ILE HIS GLY LEU VAL SEQRES 8 D 259 HIS VAL ALA GLY GLY LEU ILE ALA ARG LYS THR ILE ALA SEQRES 9 D 259 GLU MET ASP GLU ALA PHE TRP HIS GLN VAL LEU ASP VAL SEQRES 10 D 259 ASN LEU THR SER LEU PHE LEU THR ALA LYS THR ALA LEU SEQRES 11 D 259 PRO LYS MET ALA LYS GLY GLY ALA ILE VAL THR PHE SER SEQRES 12 D 259 SER GLN ALA GLY ARG ASP GLY GLY GLY PRO GLY ALA LEU SEQRES 13 D 259 ALA TYR ALA THR SER LYS GLY ALA VAL MET THR PHE THR SEQRES 14 D 259 ARG GLY LEU ALA LYS GLU VAL GLY PRO LYS ILE ARG VAL SEQRES 15 D 259 ASN ALA VAL CYS PRO GLY MET ILE SER THR THR PHE HIS SEQRES 16 D 259 ASP THR PHE THR LYS PRO GLU VAL ARG GLU ARG VAL ALA SEQRES 17 D 259 GLY ALA THR SER LEU LYS ARG GLU GLY SER SER GLU ASP SEQRES 18 D 259 VAL ALA GLY LEU VAL ALA PHE LEU ALA SER ASP ASP ALA SEQRES 19 D 259 ALA TYR VAL THR GLY ALA CYS TYR ASP ILE ASN GLY GLY SEQRES 20 D 259 VAL LEU PHE SER GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *189(H2 O) HELIX 1 1 ARG A 16 GLU A 29 1 14 HELIX 2 2 ALA A 41 LYS A 53 1 13 HELIX 3 3 ASN A 67 GLY A 83 1 17 HELIX 4 4 ASP A 105 LEU A 117 1 13 HELIX 5 5 LEU A 117 LEU A 128 1 12 HELIX 6 6 SER A 142 GLY A 148 1 7 HELIX 7 7 ALA A 153 GLY A 175 1 23 HELIX 8 8 SER A 216 SER A 229 1 14 HELIX 9 9 ASP A 230 ALA A 233 5 4 HELIX 10 10 ARG B 16 GLU B 29 1 14 HELIX 11 11 ALA B 41 LYS B 53 1 13 HELIX 12 12 ASN B 67 GLY B 83 1 17 HELIX 13 13 ASP B 105 LEU B 117 1 13 HELIX 14 14 LEU B 117 LEU B 128 1 12 HELIX 15 15 SER B 142 GLY B 148 1 7 HELIX 16 16 ALA B 153 GLY B 175 1 23 HELIX 17 17 SER B 216 SER B 229 1 14 HELIX 18 18 ASP B 230 ALA B 233 5 4 HELIX 19 19 ARG C 16 GLU C 29 1 14 HELIX 20 20 ALA C 41 LEU C 54 1 14 HELIX 21 21 ASN C 67 GLY C 83 1 17 HELIX 22 22 THR C 100 MET C 104 5 5 HELIX 23 23 ASP C 105 LEU C 117 1 13 HELIX 24 24 LEU C 117 LEU C 128 1 12 HELIX 25 25 SER C 142 GLY C 148 1 7 HELIX 26 26 ALA C 153 GLY C 175 1 23 HELIX 27 27 SER C 216 SER C 229 1 14 HELIX 28 28 ASP C 230 ALA C 233 5 4 HELIX 29 29 ARG D 16 GLU D 29 1 14 HELIX 30 30 ALA D 41 LYS D 53 1 13 HELIX 31 31 ASN D 67 GLY D 83 1 17 HELIX 32 32 ASP D 105 LEU D 117 1 13 HELIX 33 33 LEU D 117 LEU D 128 1 12 HELIX 34 34 SER D 142 GLY D 148 1 7 HELIX 35 35 ALA D 153 GLY D 175 1 23 HELIX 36 36 SER D 216 SER D 229 1 14 HELIX 37 37 ASP D 230 ALA D 233 5 4 SHEET 1 A 7 LEU A 59 LYS A 62 0 SHEET 2 A 7 ASN A 32 TYR A 37 1 N VAL A 33 O LEU A 59 SHEET 3 A 7 THR A 8 ALA A 12 1 N VAL A 11 O VAL A 34 SHEET 4 A 7 ILE A 85 HIS A 90 1 O GLY A 87 N VAL A 10 SHEET 5 A 7 MET A 131 PHE A 140 1 O ALA A 132 N ILE A 85 SHEET 6 A 7 ARG A 179 PRO A 185 1 O ASN A 181 N THR A 139 SHEET 7 A 7 CYS A 239 ILE A 242 1 O TYR A 240 N ALA A 182 SHEET 1 B 7 LEU B 59 LYS B 62 0 SHEET 2 B 7 ASN B 32 TYR B 37 1 N VAL B 33 O LEU B 59 SHEET 3 B 7 THR B 8 ALA B 12 1 N VAL B 11 O VAL B 34 SHEET 4 B 7 ILE B 85 HIS B 90 1 O GLY B 87 N VAL B 10 SHEET 5 B 7 MET B 131 PHE B 140 1 O ALA B 136 N LEU B 88 SHEET 6 B 7 ARG B 179 ILE B 188 1 O ASN B 181 N THR B 139 SHEET 7 B 7 CYS B 239 PHE B 248 1 O TYR B 240 N CYS B 184 SHEET 1 C 7 ALA C 58 LYS C 62 0 SHEET 2 C 7 ASN C 32 TYR C 37 1 N LEU C 35 O LEU C 59 SHEET 3 C 7 THR C 8 ALA C 12 1 N VAL C 11 O VAL C 34 SHEET 4 C 7 ILE C 85 HIS C 90 1 O GLY C 87 N VAL C 10 SHEET 5 C 7 MET C 131 PHE C 140 1 O ALA C 132 N ILE C 85 SHEET 6 C 7 ARG C 179 CYS C 184 1 O ARG C 179 N ILE C 137 SHEET 7 C 7 CYS C 239 ASP C 241 1 O TYR C 240 N CYS C 184 SHEET 1 D 7 ALA D 58 LYS D 62 0 SHEET 2 D 7 ASN D 32 TYR D 37 1 N LEU D 35 O LEU D 59 SHEET 3 D 7 THR D 8 ALA D 12 1 N VAL D 11 O VAL D 34 SHEET 4 D 7 ILE D 85 HIS D 90 1 O GLY D 87 N VAL D 10 SHEET 5 D 7 MET D 131 PHE D 140 1 O ALA D 132 N ILE D 85 SHEET 6 D 7 ARG D 179 CYS D 184 1 O ARG D 179 N ILE D 137 SHEET 7 D 7 CYS D 239 ASP D 241 1 O TYR D 240 N ALA D 182 CISPEP 1 GLY A 175 PRO A 176 0 3.62 CISPEP 2 GLY B 175 PRO B 176 0 7.54 CISPEP 3 GLY C 175 PRO C 176 0 -0.47 CISPEP 4 GLY D 175 PRO D 176 0 6.30 CRYST1 114.501 131.260 67.952 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008734 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014716 0.00000