HEADER STRUCTURAL PROTEIN 03-SEP-08 3EDV TITLE CRYSTAL STRUCTURE OF REPEATS 14-16 OF BETA2-SPECTRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECTRIN BETA CHAIN, BRAIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SPECTRIN REPEATS 14-16; COMPND 5 SYNONYM: SPECTRIN, NON-ERYTHROID BETA CHAIN 1, BETA-II SPECTRIN, COMPND 6 FODRIN BETA CHAIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPTBN1, SPTB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS SPECTRIN REPEAT, COILED COIL, ACTIN CAPPING, ACTIN-BINDING, KEYWDS 2 ALTERNATIVE SPLICING, CALMODULIN-BINDING, CYTOPLASM, CYTOSKELETON, KEYWDS 3 GLYCOPROTEIN, MEMBRANE, PHOSPHOPROTEIN, POLYMORPHISM, STRUCTURAL KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.MICHAELY,D.R.TOMCHICK REVDAT 4 21-FEB-24 3EDV 1 REMARK SEQADV LINK REVDAT 3 29-DEC-09 3EDV 1 REMARK REVDAT 2 24-MAR-09 3EDV 1 JRNL REVDAT 1 20-JAN-09 3EDV 0 JRNL AUTH L.DAVIS,K.ABDI,M.MACHIUS,C.BRAUTIGAM,D.R.TOMCHICK,V.BENNETT, JRNL AUTH 2 P.MICHAELY JRNL TITL LOCALIZATION AND STRUCTURE OF THE ANKYRIN-BINDING SITE ON JRNL TITL 2 BETA2-SPECTRIN JRNL REF J.BIOL.CHEM. V. 284 6982 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19098307 JRNL DOI 10.1074/JBC.M809245200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 5.2.0019 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 54958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6368 - 5.2854 0.97 2844 158 0.2221 0.2401 REMARK 3 2 5.2854 - 4.1994 1.00 2757 153 0.1638 0.2240 REMARK 3 3 4.1994 - 3.6698 1.00 2715 143 0.1630 0.2267 REMARK 3 4 3.6698 - 3.3348 1.00 2680 183 0.1726 0.2574 REMARK 3 5 3.3348 - 3.0961 1.00 2715 148 0.2097 0.2530 REMARK 3 6 3.0961 - 2.9137 1.00 2697 135 0.2062 0.2904 REMARK 3 7 2.9137 - 2.7679 1.00 2687 147 0.2031 0.2926 REMARK 3 8 2.7679 - 2.6475 1.00 2674 130 0.1821 0.2253 REMARK 3 9 2.6475 - 2.5457 1.00 2611 165 0.1834 0.2542 REMARK 3 10 2.5457 - 2.4579 1.00 2632 137 0.1851 0.2705 REMARK 3 11 2.4579 - 2.3811 0.99 2669 136 0.1935 0.2388 REMARK 3 12 2.3811 - 2.3130 0.99 2630 135 0.1879 0.2257 REMARK 3 13 2.3130 - 2.2522 0.99 2596 146 0.1817 0.2383 REMARK 3 14 2.2522 - 2.1972 0.98 2656 129 0.1807 0.2324 REMARK 3 15 2.1972 - 2.1473 0.98 2561 147 0.1811 0.2401 REMARK 3 16 2.1473 - 2.1016 0.95 2520 124 0.1931 0.2853 REMARK 3 17 2.1016 - 2.0596 0.94 2450 135 0.2058 0.2505 REMARK 3 18 2.0596 - 2.0207 0.92 2463 111 0.2152 0.2767 REMARK 3 19 2.0207 - 1.9847 0.89 2372 115 0.2261 0.2695 REMARK 3 20 1.9847 - 1.9510 0.85 2241 111 0.2402 0.3285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 56.63 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48470 REMARK 3 B22 (A**2) : 0.05480 REMARK 3 B33 (A**2) : -0.53950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5621 REMARK 3 ANGLE : 0.830 7587 REMARK 3 CHIRALITY : 0.056 799 REMARK 3 PLANARITY : 0.003 1008 REMARK 3 DIHEDRAL : 15.953 2163 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1695:1750) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9609 9.3181 19.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.3259 T22: 0.3279 REMARK 3 T33: 0.2798 T12: -0.0399 REMARK 3 T13: -0.0595 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 1.2912 L22: 1.4909 REMARK 3 L33: 0.8988 L12: 0.6967 REMARK 3 L13: 0.2615 L23: 1.0142 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: 0.3015 S13: 0.0222 REMARK 3 S21: 0.0585 S22: 0.2775 S23: -0.3511 REMARK 3 S31: 0.2001 S32: 0.3389 S33: -0.1899 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 1751:1806) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8492 6.6351 15.3637 REMARK 3 T TENSOR REMARK 3 T11: 0.2866 T22: 0.3529 REMARK 3 T33: 0.2609 T12: -0.1210 REMARK 3 T13: -0.0227 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 0.8996 L22: 1.1610 REMARK 3 L33: 0.4264 L12: -0.9015 REMARK 3 L13: -0.0251 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: 0.1953 S13: 0.1353 REMARK 3 S21: -0.1773 S22: -0.2944 S23: 0.2271 REMARK 3 S31: 0.0954 S32: -0.4829 S33: 0.0902 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1807:1836) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2946 40.1966 55.2105 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.1640 REMARK 3 T33: 0.3569 T12: 0.0208 REMARK 3 T13: -0.1126 T23: -0.1146 REMARK 3 L TENSOR REMARK 3 L11: 0.7640 L22: 0.8665 REMARK 3 L33: 1.7775 L12: -0.0305 REMARK 3 L13: -0.2625 L23: 0.6156 REMARK 3 S TENSOR REMARK 3 S11: 0.2024 S12: 0.2168 S13: -0.4480 REMARK 3 S21: 0.4354 S22: 0.4467 S23: -0.8773 REMARK 3 S31: 0.4766 S32: 0.4069 S33: -0.6793 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 1837:1897) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8417 39.2758 53.3738 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.2158 REMARK 3 T33: 0.1932 T12: -0.0918 REMARK 3 T13: -0.0126 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.8435 L22: 0.2226 REMARK 3 L33: 1.7751 L12: 0.5963 REMARK 3 L13: 1.2362 L23: 1.7450 REMARK 3 S TENSOR REMARK 3 S11: 0.2340 S12: -0.0730 S13: 0.0125 REMARK 3 S21: 0.1943 S22: -0.2354 S23: 0.2627 REMARK 3 S31: 0.1760 S32: -0.1665 S33: -0.0285 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 1898:1932) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0998 69.1468 71.4249 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.2078 REMARK 3 T33: 0.1840 T12: -0.0170 REMARK 3 T13: 0.0557 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: -0.7236 L22: 1.2411 REMARK 3 L33: 1.2814 L12: -1.4711 REMARK 3 L13: -0.4043 L23: 1.4772 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: 0.1710 S13: -0.0504 REMARK 3 S21: 0.2048 S22: 0.1181 S23: -0.2977 REMARK 3 S31: 0.1164 S32: 0.0293 S33: -0.0588 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 1933:1992) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3539 85.8890 77.0513 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.0681 REMARK 3 T33: 0.0734 T12: 0.0009 REMARK 3 T13: 0.0341 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.1527 L22: 1.9476 REMARK 3 L33: 0.9580 L12: -0.1498 REMARK 3 L13: -0.0533 L23: 0.9662 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.0523 S13: 0.0682 REMARK 3 S21: -0.1278 S22: 0.0540 S23: -0.2138 REMARK 3 S31: -0.0187 S32: -0.0101 S33: -0.0573 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 1993:2015) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0596 91.6397 84.4033 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.1583 REMARK 3 T33: 0.1539 T12: 0.0149 REMARK 3 T13: 0.0327 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5180 L22: 0.8601 REMARK 3 L33: 0.8375 L12: -0.0069 REMARK 3 L13: 0.7536 L23: 0.5924 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: -0.0886 S13: 0.0806 REMARK 3 S21: 0.3987 S22: 0.0663 S23: 0.2548 REMARK 3 S31: 0.0112 S32: -0.1872 S33: 0.0474 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 1694:1706) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3959 60.4218 50.1175 REMARK 3 T TENSOR REMARK 3 T11: 0.4086 T22: 0.3495 REMARK 3 T33: 0.2502 T12: -0.1050 REMARK 3 T13: -0.2409 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.9561 L22: 3.0414 REMARK 3 L33: 2.7729 L12: 0.7990 REMARK 3 L13: 1.9356 L23: 0.2582 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: -0.1784 S13: 0.0135 REMARK 3 S21: 1.0663 S22: -0.2697 S23: -1.7400 REMARK 3 S31: -0.1868 S32: 1.2425 S33: -0.0757 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 1707:1737) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2651 47.2998 20.6163 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.4947 REMARK 3 T33: 0.2519 T12: 0.0184 REMARK 3 T13: 0.0759 T23: -0.1451 REMARK 3 L TENSOR REMARK 3 L11: 0.5520 L22: 0.0693 REMARK 3 L33: 1.4363 L12: 1.4684 REMARK 3 L13: 0.1172 L23: 0.5145 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.4413 S13: -0.2820 REMARK 3 S21: -0.3333 S22: 0.4094 S23: -0.4237 REMARK 3 S31: -0.3348 S32: 0.4119 S33: -0.1793 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 1738:1794) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5906 49.1918 36.8998 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.1767 REMARK 3 T33: 0.1258 T12: 0.0501 REMARK 3 T13: 0.0171 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.8553 L22: 0.7692 REMARK 3 L33: 1.0352 L12: 0.6357 REMARK 3 L13: 0.2218 L23: -0.0256 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: 0.1706 S13: -0.2548 REMARK 3 S21: 0.0078 S22: -0.0224 S23: -0.1034 REMARK 3 S31: 0.0686 S32: 0.1068 S33: -0.0091 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 1795:1839) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0251 20.5578 -2.1278 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.2692 REMARK 3 T33: 0.2428 T12: -0.0017 REMARK 3 T13: 0.0498 T23: -0.1768 REMARK 3 L TENSOR REMARK 3 L11: 0.7479 L22: 1.8134 REMARK 3 L33: 0.2153 L12: 0.5593 REMARK 3 L13: 0.2574 L23: 0.6758 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: -0.3702 S13: 0.1466 REMARK 3 S21: -0.2385 S22: 0.8294 S23: -0.8642 REMARK 3 S31: -0.0925 S32: 0.7181 S33: -0.4528 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 1840:1915) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6985 14.4780 -6.1700 REMARK 3 T TENSOR REMARK 3 T11: 0.3508 T22: 0.2128 REMARK 3 T33: 0.2723 T12: 0.0270 REMARK 3 T13: -0.0217 T23: -0.0829 REMARK 3 L TENSOR REMARK 3 L11: 0.5900 L22: 1.4015 REMARK 3 L33: 0.6583 L12: 0.0758 REMARK 3 L13: -0.0754 L23: 1.6206 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: -0.1246 S13: -0.1854 REMARK 3 S21: -0.3781 S22: 0.0359 S23: 0.3816 REMARK 3 S31: -0.1250 S32: 0.0517 S33: 0.0368 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 1916:1958) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1515 -37.4548 -28.8110 REMARK 3 T TENSOR REMARK 3 T11: 0.3653 T22: 0.1832 REMARK 3 T33: 0.3814 T12: -0.0014 REMARK 3 T13: 0.0946 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.3527 L22: 0.3708 REMARK 3 L33: 0.5187 L12: -1.0460 REMARK 3 L13: 0.5098 L23: 0.0980 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: 0.0172 S13: -0.0360 REMARK 3 S21: 0.3056 S22: 0.0229 S23: -0.5475 REMARK 3 S31: 0.2570 S32: 0.1277 S33: 0.0835 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 1959:2014) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1617 -24.0621 -30.2461 REMARK 3 T TENSOR REMARK 3 T11: 0.3484 T22: 0.1480 REMARK 3 T33: 0.2711 T12: -0.0055 REMARK 3 T13: -0.0579 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.5438 L22: 1.4986 REMARK 3 L33: 0.3996 L12: -0.7811 REMARK 3 L13: -0.6558 L23: 0.6646 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: 0.2160 S13: 0.0276 REMARK 3 S21: -0.3203 S22: -0.1705 S23: 0.8411 REMARK 3 S31: -0.1309 S32: -0.1921 S33: 0.1964 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : 0.68200 REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRISHCL, 14% PEG4000, 0.3M REMARK 280 MAGNESIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.66750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.80550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.20750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 130.80550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.66750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.20750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 GLY B -4 REMARK 465 LEU B 2015 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 162 O REMARK 620 2 HOH A 309 O 63.8 REMARK 620 3 HOH A 492 O 103.0 160.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1009 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 179 O REMARK 620 2 HOH B 640 O 78.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 182 O REMARK 620 2 HOH B 299 O 99.5 REMARK 620 3 HOH B 300 O 144.7 108.0 REMARK 620 4 HOH B 301 O 71.4 158.1 75.0 REMARK 620 5 ASP B1729 OD2 76.3 95.5 79.4 63.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 232 O REMARK 620 2 HOH B 304 O 151.4 REMARK 620 3 HOH B 305 O 107.8 84.8 REMARK 620 4 HOH B 306 O 66.2 85.2 118.6 REMARK 620 5 HOH B 307 O 61.2 117.8 151.4 82.6 REMARK 620 6 HOH B 308 O 109.5 99.0 59.3 174.9 97.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1000 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 294 O REMARK 620 2 HOH B 295 O 130.0 REMARK 620 3 HOH B 296 O 95.5 79.2 REMARK 620 4 HOH B 297 O 137.4 81.5 58.8 REMARK 620 5 GLU B1718 OE1 65.9 131.3 149.5 118.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1012 DBREF 3EDV A 1697 2015 UNP Q01082 SPTB2_HUMAN 1697 2015 DBREF 3EDV B 1697 2015 UNP Q01082 SPTB2_HUMAN 1697 2015 SEQADV 3EDV GLY A -4 UNP Q01082 EXPRESSION TAG SEQADV 3EDV SER A -3 UNP Q01082 EXPRESSION TAG SEQADV 3EDV HIS A -2 UNP Q01082 EXPRESSION TAG SEQADV 3EDV MET A -1 UNP Q01082 EXPRESSION TAG SEQADV 3EDV GLY B -4 UNP Q01082 EXPRESSION TAG SEQADV 3EDV SER B -3 UNP Q01082 EXPRESSION TAG SEQADV 3EDV HIS B -2 UNP Q01082 EXPRESSION TAG SEQADV 3EDV MET B -1 UNP Q01082 EXPRESSION TAG SEQRES 1 A 323 GLY SER HIS MET ARG HIS ARG LEU PHE GLN LEU ASN ARG SEQRES 2 A 323 GLU VAL ASP ASP LEU GLU GLN TRP ILE ALA GLU ARG GLU SEQRES 3 A 323 VAL VAL ALA GLY SER HIS GLU LEU GLY GLN ASP TYR GLU SEQRES 4 A 323 HIS VAL THR MET LEU GLN GLU ARG PHE ARG GLU PHE ALA SEQRES 5 A 323 ARG ASP THR GLY ASN ILE GLY GLN GLU ARG VAL ASP THR SEQRES 6 A 323 VAL ASN HIS LEU ALA ASP GLU LEU ILE ASN SER GLY HIS SEQRES 7 A 323 SER ASP ALA ALA THR ILE ALA GLU TRP LYS ASP GLY LEU SEQRES 8 A 323 ASN GLU ALA TRP ALA ASP LEU LEU GLU LEU ILE ASP THR SEQRES 9 A 323 ARG THR GLN ILE LEU ALA ALA SER TYR GLU LEU HIS LYS SEQRES 10 A 323 PHE TYR HIS ASP ALA LYS GLU ILE PHE GLY ARG ILE GLN SEQRES 11 A 323 ASP LYS HIS LYS LYS LEU PRO GLU GLU LEU GLY ARG ASP SEQRES 12 A 323 GLN ASN THR VAL GLU THR LEU GLN ARG MET HIS THR THR SEQRES 13 A 323 PHE GLU HIS ASP ILE GLN ALA LEU GLY THR GLN VAL ARG SEQRES 14 A 323 GLN LEU GLN GLU ASP ALA ALA ARG LEU GLN ALA ALA TYR SEQRES 15 A 323 ALA GLY ASP LYS ALA ASP ASP ILE GLN LYS ARG GLU ASN SEQRES 16 A 323 GLU VAL LEU GLU ALA TRP LYS SER LEU LEU ASP ALA CYS SEQRES 17 A 323 GLU SER ARG ARG VAL ARG LEU VAL ASP THR GLY ASP LYS SEQRES 18 A 323 PHE ARG PHE PHE SER MET VAL ARG ASP LEU MET LEU TRP SEQRES 19 A 323 MET GLU ASP VAL ILE ARG GLN ILE GLU ALA GLN GLU LYS SEQRES 20 A 323 PRO ARG ASP VAL SER SER VAL GLU LEU LEU MET ASN ASN SEQRES 21 A 323 HIS GLN GLY ILE LYS ALA GLU ILE ASP ALA ARG ASN ASP SEQRES 22 A 323 SER PHE THR THR CYS ILE GLU LEU GLY LYS SER LEU LEU SEQRES 23 A 323 ALA ARG LYS HIS TYR ALA SER GLU GLU ILE LYS GLU LYS SEQRES 24 A 323 LEU LEU GLN LEU THR GLU LYS ARG LYS GLU MET ILE ASP SEQRES 25 A 323 LYS TRP GLU ASP ARG TRP GLU TRP LEU ARG LEU SEQRES 1 B 323 GLY SER HIS MET ARG HIS ARG LEU PHE GLN LEU ASN ARG SEQRES 2 B 323 GLU VAL ASP ASP LEU GLU GLN TRP ILE ALA GLU ARG GLU SEQRES 3 B 323 VAL VAL ALA GLY SER HIS GLU LEU GLY GLN ASP TYR GLU SEQRES 4 B 323 HIS VAL THR MET LEU GLN GLU ARG PHE ARG GLU PHE ALA SEQRES 5 B 323 ARG ASP THR GLY ASN ILE GLY GLN GLU ARG VAL ASP THR SEQRES 6 B 323 VAL ASN HIS LEU ALA ASP GLU LEU ILE ASN SER GLY HIS SEQRES 7 B 323 SER ASP ALA ALA THR ILE ALA GLU TRP LYS ASP GLY LEU SEQRES 8 B 323 ASN GLU ALA TRP ALA ASP LEU LEU GLU LEU ILE ASP THR SEQRES 9 B 323 ARG THR GLN ILE LEU ALA ALA SER TYR GLU LEU HIS LYS SEQRES 10 B 323 PHE TYR HIS ASP ALA LYS GLU ILE PHE GLY ARG ILE GLN SEQRES 11 B 323 ASP LYS HIS LYS LYS LEU PRO GLU GLU LEU GLY ARG ASP SEQRES 12 B 323 GLN ASN THR VAL GLU THR LEU GLN ARG MET HIS THR THR SEQRES 13 B 323 PHE GLU HIS ASP ILE GLN ALA LEU GLY THR GLN VAL ARG SEQRES 14 B 323 GLN LEU GLN GLU ASP ALA ALA ARG LEU GLN ALA ALA TYR SEQRES 15 B 323 ALA GLY ASP LYS ALA ASP ASP ILE GLN LYS ARG GLU ASN SEQRES 16 B 323 GLU VAL LEU GLU ALA TRP LYS SER LEU LEU ASP ALA CYS SEQRES 17 B 323 GLU SER ARG ARG VAL ARG LEU VAL ASP THR GLY ASP LYS SEQRES 18 B 323 PHE ARG PHE PHE SER MET VAL ARG ASP LEU MET LEU TRP SEQRES 19 B 323 MET GLU ASP VAL ILE ARG GLN ILE GLU ALA GLN GLU LYS SEQRES 20 B 323 PRO ARG ASP VAL SER SER VAL GLU LEU LEU MET ASN ASN SEQRES 21 B 323 HIS GLN GLY ILE LYS ALA GLU ILE ASP ALA ARG ASN ASP SEQRES 22 B 323 SER PHE THR THR CYS ILE GLU LEU GLY LYS SER LEU LEU SEQRES 23 B 323 ALA ARG LYS HIS TYR ALA SER GLU GLU ILE LYS GLU LYS SEQRES 24 B 323 LEU LEU GLN LEU THR GLU LYS ARG LYS GLU MET ILE ASP SEQRES 25 B 323 LYS TRP GLU ASP ARG TRP GLU TRP LEU ARG LEU HET MG A1004 1 HET MG A1005 1 HET MG A1006 1 HET MG A1007 1 HET MG A1008 1 HET MG A1011 1 HET MG B1000 1 HET MG B1001 1 HET MG B1002 1 HET MG B1003 1 HET MG B1009 1 HET MG B1010 1 HET MG B1012 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 13(MG 2+) FORMUL 16 HOH *699(H2 O) HELIX 1 1 SER A -3 GLY A 1722 1 29 HELIX 2 2 ASP A 1729 SER A 1768 1 40 HELIX 3 3 ASP A 1772 LYS A 1827 1 56 HELIX 4 4 ASP A 1835 ILE A 1853 1 19 HELIX 5 5 ILE A 1853 TYR A 1874 1 22 HELIX 6 6 GLY A 1876 ALA A 1936 1 61 HELIX 7 7 ASP A 1942 ARG A 1963 1 22 HELIX 8 8 ARG A 1963 ARG A 1980 1 18 HELIX 9 9 ALA A 1984 LEU A 2015 1 32 HELIX 10 10 SER B -3 GLY B 1722 1 29 HELIX 11 11 ASP B 1729 SER B 1768 1 40 HELIX 12 12 ASP B 1772 LYS B 1827 1 56 HELIX 13 13 ASP B 1835 TYR B 1874 1 40 HELIX 14 14 ALA B 1875 ALA B 1936 1 62 HELIX 15 15 ASP B 1942 ALA B 1962 1 21 HELIX 16 16 ARG B 1963 ARG B 1980 1 18 HELIX 17 17 ALA B 1984 ARG B 2014 1 31 LINK O HOH A 127 MG MG A1007 1555 1555 2.54 LINK O HOH A 162 MG MG A1004 1555 1555 2.45 LINK O HOH A 243 MG MG A1005 1555 1555 2.92 LINK O HOH A 309 MG MG A1004 1555 1555 2.24 LINK O HOH A 492 MG MG A1004 1555 1555 2.30 LINK O HOH B 179 MG MG B1009 1555 1555 2.27 LINK O HOH B 182 MG MG B1001 1555 1555 2.49 LINK O HOH B 232 MG MG B1002 1555 1555 2.99 LINK O HOH B 294 MG MG B1000 1555 1555 2.25 LINK O HOH B 295 MG MG B1000 1555 1555 2.95 LINK O HOH B 296 MG MG B1000 1555 1555 2.34 LINK O HOH B 297 MG MG B1000 1555 1555 2.59 LINK O HOH B 299 MG MG B1001 1555 1555 1.92 LINK O HOH B 300 MG MG B1001 1555 1555 2.46 LINK O HOH B 301 MG MG B1001 1555 1555 1.91 LINK O HOH B 304 MG MG B1002 1555 1555 1.95 LINK O HOH B 305 MG MG B1002 1555 1555 1.83 LINK O HOH B 306 MG MG B1002 1555 1555 1.87 LINK O HOH B 307 MG MG B1002 1555 1555 2.48 LINK O HOH B 308 MG MG B1002 1555 1555 2.93 LINK O HOH B 367 MG MG B1012 1555 1555 2.23 LINK O HOH B 640 MG MG B1009 1555 1555 2.11 LINK O HOH B 678 MG MG B1003 1555 1555 2.79 LINK O HOH B 699 MG MG B1010 1555 1555 2.84 LINK MG MG B1000 OE1 GLU B1718 1555 1555 2.58 LINK MG MG B1001 OD2 ASP B1729 1555 1555 2.43 SITE 1 AC1 4 HOH A 162 HOH A 309 HOH A 492 MET A1845 SITE 1 AC2 2 HOH A 243 GLY A1955 SITE 1 AC3 1 HOH A 127 SITE 1 AC4 1 GLU A1947 SITE 1 AC5 5 HOH B 294 HOH B 295 HOH B 296 HOH B 297 SITE 2 AC5 5 GLU B1718 SITE 1 AC6 6 GLY A1769 HOH B 182 HOH B 299 HOH B 300 SITE 2 AC6 6 HOH B 301 ASP B1729 SITE 1 AC7 7 HOH B 232 HOH B 304 HOH B 305 HOH B 306 SITE 2 AC7 7 HOH B 307 HOH B 308 GLU B1935 SITE 1 AC8 2 HOH A 500 HOH B 678 SITE 1 AC9 2 HOH B 179 HOH B 640 SITE 1 BC1 1 HOH B 699 SITE 1 BC2 3 HOH B 367 ASN B1704 ASP B1708 CRYST1 51.335 56.415 261.611 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003822 0.00000