data_3EDY # _entry.id 3EDY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EDY pdb_00003edy 10.2210/pdb3edy/pdb RCSB RCSB049202 ? ? WWPDB D_1000049202 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2024-10-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 4 'Structure model' struct_site_gen 9 5 'Structure model' chem_comp 10 5 'Structure model' chem_comp_atom 11 5 'Structure model' chem_comp_bond 12 5 'Structure model' database_2 13 5 'Structure model' pdbx_entry_details 14 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.pdbx_role' 7 5 'Structure model' '_chem_comp.pdbx_synonyms' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3EDY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Guhaniyogi, J.' 1 'Sohar, I.' 2 'Das, K.' 3 'Lobel, P.' 4 'Stock, A.M.' 5 # _citation.id primary _citation.title ;Crystal Structure and Autoactivation Pathway of the Precursor Form of Human Tripeptidyl-peptidase 1, the Enzyme Deficient in Late Infantile Ceroid Lipofuscinosis ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 284 _citation.page_first 3985 _citation.page_last 3997 _citation.year 2009 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19038967 _citation.pdbx_database_id_DOI 10.1074/jbc.M806943200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guhaniyogi, J.' 1 ? primary 'Sohar, I.' 2 ? primary 'Das, K.' 3 ? primary 'Stock, A.M.' 4 ? primary 'Lobel, P.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tripeptidyl-peptidase 1' 59369.121 1 3.4.14.9 ? 'residues 20-563' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 4 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 5 water nat water 18.015 235 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Tripeptidyl-peptidase I, TPP-1, TPP-I, Tripeptidyl aminopeptidase, Lysosomal pepstatin- insensitive protease, LPIC, Cell growth-inhibiting gene 1 protein ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTV QKWLLAAGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPT SSLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDLAQFMRLFGGNFAHQASVAR VVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQR VNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRP SYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPP LGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNP ; _entity_poly.pdbx_seq_one_letter_code_can ;SYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTV QKWLLAAGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPT SSLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDLAQFMRLFGGNFAHQASVAR VVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQR VNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRP SYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPP LGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 SER n 1 4 PRO n 1 5 GLU n 1 6 PRO n 1 7 ASP n 1 8 GLN n 1 9 ARG n 1 10 ARG n 1 11 THR n 1 12 LEU n 1 13 PRO n 1 14 PRO n 1 15 GLY n 1 16 TRP n 1 17 VAL n 1 18 SER n 1 19 LEU n 1 20 GLY n 1 21 ARG n 1 22 ALA n 1 23 ASP n 1 24 PRO n 1 25 GLU n 1 26 GLU n 1 27 GLU n 1 28 LEU n 1 29 SER n 1 30 LEU n 1 31 THR n 1 32 PHE n 1 33 ALA n 1 34 LEU n 1 35 ARG n 1 36 GLN n 1 37 GLN n 1 38 ASN n 1 39 VAL n 1 40 GLU n 1 41 ARG n 1 42 LEU n 1 43 SER n 1 44 GLU n 1 45 LEU n 1 46 VAL n 1 47 GLN n 1 48 ALA n 1 49 VAL n 1 50 SER n 1 51 ASP n 1 52 PRO n 1 53 SER n 1 54 SER n 1 55 PRO n 1 56 GLN n 1 57 TYR n 1 58 GLY n 1 59 LYS n 1 60 TYR n 1 61 LEU n 1 62 THR n 1 63 LEU n 1 64 GLU n 1 65 ASN n 1 66 VAL n 1 67 ALA n 1 68 ASP n 1 69 LEU n 1 70 VAL n 1 71 ARG n 1 72 PRO n 1 73 SER n 1 74 PRO n 1 75 LEU n 1 76 THR n 1 77 LEU n 1 78 HIS n 1 79 THR n 1 80 VAL n 1 81 GLN n 1 82 LYS n 1 83 TRP n 1 84 LEU n 1 85 LEU n 1 86 ALA n 1 87 ALA n 1 88 GLY n 1 89 ALA n 1 90 GLN n 1 91 LYS n 1 92 CYS n 1 93 HIS n 1 94 SER n 1 95 VAL n 1 96 ILE n 1 97 THR n 1 98 GLN n 1 99 ASP n 1 100 PHE n 1 101 LEU n 1 102 THR n 1 103 CYS n 1 104 TRP n 1 105 LEU n 1 106 SER n 1 107 ILE n 1 108 ARG n 1 109 GLN n 1 110 ALA n 1 111 GLU n 1 112 LEU n 1 113 LEU n 1 114 LEU n 1 115 PRO n 1 116 GLY n 1 117 ALA n 1 118 GLU n 1 119 PHE n 1 120 HIS n 1 121 HIS n 1 122 TYR n 1 123 VAL n 1 124 GLY n 1 125 GLY n 1 126 PRO n 1 127 THR n 1 128 GLU n 1 129 THR n 1 130 HIS n 1 131 VAL n 1 132 VAL n 1 133 ARG n 1 134 SER n 1 135 PRO n 1 136 HIS n 1 137 PRO n 1 138 TYR n 1 139 GLN n 1 140 LEU n 1 141 PRO n 1 142 GLN n 1 143 ALA n 1 144 LEU n 1 145 ALA n 1 146 PRO n 1 147 HIS n 1 148 VAL n 1 149 ASP n 1 150 PHE n 1 151 VAL n 1 152 GLY n 1 153 GLY n 1 154 LEU n 1 155 HIS n 1 156 ARG n 1 157 PHE n 1 158 PRO n 1 159 PRO n 1 160 THR n 1 161 SER n 1 162 SER n 1 163 LEU n 1 164 ARG n 1 165 GLN n 1 166 ARG n 1 167 PRO n 1 168 GLU n 1 169 PRO n 1 170 GLN n 1 171 VAL n 1 172 THR n 1 173 GLY n 1 174 THR n 1 175 VAL n 1 176 GLY n 1 177 LEU n 1 178 HIS n 1 179 LEU n 1 180 GLY n 1 181 VAL n 1 182 THR n 1 183 PRO n 1 184 SER n 1 185 VAL n 1 186 ILE n 1 187 ARG n 1 188 LYS n 1 189 ARG n 1 190 TYR n 1 191 ASN n 1 192 LEU n 1 193 THR n 1 194 SER n 1 195 GLN n 1 196 ASP n 1 197 VAL n 1 198 GLY n 1 199 SER n 1 200 GLY n 1 201 THR n 1 202 SER n 1 203 ASN n 1 204 ASN n 1 205 SER n 1 206 GLN n 1 207 ALA n 1 208 CYS n 1 209 ALA n 1 210 GLN n 1 211 PHE n 1 212 LEU n 1 213 GLU n 1 214 GLN n 1 215 TYR n 1 216 PHE n 1 217 HIS n 1 218 ASP n 1 219 SER n 1 220 ASP n 1 221 LEU n 1 222 ALA n 1 223 GLN n 1 224 PHE n 1 225 MET n 1 226 ARG n 1 227 LEU n 1 228 PHE n 1 229 GLY n 1 230 GLY n 1 231 ASN n 1 232 PHE n 1 233 ALA n 1 234 HIS n 1 235 GLN n 1 236 ALA n 1 237 SER n 1 238 VAL n 1 239 ALA n 1 240 ARG n 1 241 VAL n 1 242 VAL n 1 243 GLY n 1 244 GLN n 1 245 GLN n 1 246 GLY n 1 247 ARG n 1 248 GLY n 1 249 ARG n 1 250 ALA n 1 251 GLY n 1 252 ILE n 1 253 GLU n 1 254 ALA n 1 255 SER n 1 256 LEU n 1 257 ASP n 1 258 VAL n 1 259 GLN n 1 260 TYR n 1 261 LEU n 1 262 MET n 1 263 SER n 1 264 ALA n 1 265 GLY n 1 266 ALA n 1 267 ASN n 1 268 ILE n 1 269 SER n 1 270 THR n 1 271 TRP n 1 272 VAL n 1 273 TYR n 1 274 SER n 1 275 SER n 1 276 PRO n 1 277 GLY n 1 278 ARG n 1 279 HIS n 1 280 GLU n 1 281 GLY n 1 282 GLN n 1 283 GLU n 1 284 PRO n 1 285 PHE n 1 286 LEU n 1 287 GLN n 1 288 TRP n 1 289 LEU n 1 290 MET n 1 291 LEU n 1 292 LEU n 1 293 SER n 1 294 ASN n 1 295 GLU n 1 296 SER n 1 297 ALA n 1 298 LEU n 1 299 PRO n 1 300 HIS n 1 301 VAL n 1 302 HIS n 1 303 THR n 1 304 VAL n 1 305 SER n 1 306 TYR n 1 307 GLY n 1 308 ASP n 1 309 ASP n 1 310 GLU n 1 311 ASP n 1 312 SER n 1 313 LEU n 1 314 SER n 1 315 SER n 1 316 ALA n 1 317 TYR n 1 318 ILE n 1 319 GLN n 1 320 ARG n 1 321 VAL n 1 322 ASN n 1 323 THR n 1 324 GLU n 1 325 LEU n 1 326 MET n 1 327 LYS n 1 328 ALA n 1 329 ALA n 1 330 ALA n 1 331 ARG n 1 332 GLY n 1 333 LEU n 1 334 THR n 1 335 LEU n 1 336 LEU n 1 337 PHE n 1 338 ALA n 1 339 SER n 1 340 GLY n 1 341 ASP n 1 342 SER n 1 343 GLY n 1 344 ALA n 1 345 GLY n 1 346 CYS n 1 347 TRP n 1 348 SER n 1 349 VAL n 1 350 SER n 1 351 GLY n 1 352 ARG n 1 353 HIS n 1 354 GLN n 1 355 PHE n 1 356 ARG n 1 357 PRO n 1 358 THR n 1 359 PHE n 1 360 PRO n 1 361 ALA n 1 362 SER n 1 363 SER n 1 364 PRO n 1 365 TYR n 1 366 VAL n 1 367 THR n 1 368 THR n 1 369 VAL n 1 370 GLY n 1 371 GLY n 1 372 THR n 1 373 SER n 1 374 PHE n 1 375 GLN n 1 376 GLU n 1 377 PRO n 1 378 PHE n 1 379 LEU n 1 380 ILE n 1 381 THR n 1 382 ASN n 1 383 GLU n 1 384 ILE n 1 385 VAL n 1 386 ASP n 1 387 TYR n 1 388 ILE n 1 389 SER n 1 390 GLY n 1 391 GLY n 1 392 GLY n 1 393 PHE n 1 394 SER n 1 395 ASN n 1 396 VAL n 1 397 PHE n 1 398 PRO n 1 399 ARG n 1 400 PRO n 1 401 SER n 1 402 TYR n 1 403 GLN n 1 404 GLU n 1 405 GLU n 1 406 ALA n 1 407 VAL n 1 408 THR n 1 409 LYS n 1 410 PHE n 1 411 LEU n 1 412 SER n 1 413 SER n 1 414 SER n 1 415 PRO n 1 416 HIS n 1 417 LEU n 1 418 PRO n 1 419 PRO n 1 420 SER n 1 421 SER n 1 422 TYR n 1 423 PHE n 1 424 ASN n 1 425 ALA n 1 426 SER n 1 427 GLY n 1 428 ARG n 1 429 ALA n 1 430 TYR n 1 431 PRO n 1 432 ASP n 1 433 VAL n 1 434 ALA n 1 435 ALA n 1 436 LEU n 1 437 SER n 1 438 ASP n 1 439 GLY n 1 440 TYR n 1 441 TRP n 1 442 VAL n 1 443 VAL n 1 444 SER n 1 445 ASN n 1 446 ARG n 1 447 VAL n 1 448 PRO n 1 449 ILE n 1 450 PRO n 1 451 TRP n 1 452 VAL n 1 453 SER n 1 454 GLY n 1 455 THR n 1 456 SER n 1 457 ALA n 1 458 SER n 1 459 THR n 1 460 PRO n 1 461 VAL n 1 462 PHE n 1 463 GLY n 1 464 GLY n 1 465 ILE n 1 466 LEU n 1 467 SER n 1 468 LEU n 1 469 ILE n 1 470 ASN n 1 471 GLU n 1 472 HIS n 1 473 ARG n 1 474 ILE n 1 475 LEU n 1 476 SER n 1 477 GLY n 1 478 ARG n 1 479 PRO n 1 480 PRO n 1 481 LEU n 1 482 GLY n 1 483 PHE n 1 484 LEU n 1 485 ASN n 1 486 PRO n 1 487 ARG n 1 488 LEU n 1 489 TYR n 1 490 GLN n 1 491 GLN n 1 492 HIS n 1 493 GLY n 1 494 ALA n 1 495 GLY n 1 496 LEU n 1 497 PHE n 1 498 ASP n 1 499 VAL n 1 500 THR n 1 501 ARG n 1 502 GLY n 1 503 CYS n 1 504 HIS n 1 505 GLU n 1 506 SER n 1 507 CYS n 1 508 LEU n 1 509 ASP n 1 510 GLU n 1 511 GLU n 1 512 VAL n 1 513 GLU n 1 514 GLY n 1 515 GLN n 1 516 GLY n 1 517 PHE n 1 518 CYS n 1 519 SER n 1 520 GLY n 1 521 PRO n 1 522 GLY n 1 523 TRP n 1 524 ASP n 1 525 PRO n 1 526 VAL n 1 527 THR n 1 528 GLY n 1 529 TRP n 1 530 GLY n 1 531 THR n 1 532 PRO n 1 533 ASN n 1 534 PHE n 1 535 PRO n 1 536 ALA n 1 537 LEU n 1 538 LEU n 1 539 LYS n 1 540 THR n 1 541 LEU n 1 542 LEU n 1 543 ASN n 1 544 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TPP1, CLN2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'Chinese Hamster' _entity_src_gen.pdbx_host_org_scientific_name 'Cricetulus griseus' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10029 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell 'OVARY CELLS' _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 20 20 SER SER A . n A 1 2 TYR 2 21 21 TYR TYR A . n A 1 3 SER 3 22 22 SER SER A . n A 1 4 PRO 4 23 23 PRO PRO A . n A 1 5 GLU 5 24 24 GLU GLU A . n A 1 6 PRO 6 25 25 PRO PRO A . n A 1 7 ASP 7 26 26 ASP ASP A . n A 1 8 GLN 8 27 27 GLN GLN A . n A 1 9 ARG 9 28 28 ARG ARG A . n A 1 10 ARG 10 29 29 ARG ARG A . n A 1 11 THR 11 30 30 THR THR A . n A 1 12 LEU 12 31 31 LEU LEU A . n A 1 13 PRO 13 32 32 PRO PRO A . n A 1 14 PRO 14 33 33 PRO PRO A . n A 1 15 GLY 15 34 34 GLY GLY A . n A 1 16 TRP 16 35 35 TRP TRP A . n A 1 17 VAL 17 36 36 VAL VAL A . n A 1 18 SER 18 37 37 SER SER A . n A 1 19 LEU 19 38 38 LEU LEU A . n A 1 20 GLY 20 39 39 GLY GLY A . n A 1 21 ARG 21 40 40 ARG ARG A . n A 1 22 ALA 22 41 41 ALA ALA A . n A 1 23 ASP 23 42 42 ASP ASP A . n A 1 24 PRO 24 43 43 PRO PRO A . n A 1 25 GLU 25 44 44 GLU GLU A . n A 1 26 GLU 26 45 45 GLU GLU A . n A 1 27 GLU 27 46 46 GLU GLU A . n A 1 28 LEU 28 47 47 LEU LEU A . n A 1 29 SER 29 48 48 SER SER A . n A 1 30 LEU 30 49 49 LEU LEU A . n A 1 31 THR 31 50 50 THR THR A . n A 1 32 PHE 32 51 51 PHE PHE A . n A 1 33 ALA 33 52 52 ALA ALA A . n A 1 34 LEU 34 53 53 LEU LEU A . n A 1 35 ARG 35 54 54 ARG ARG A . n A 1 36 GLN 36 55 55 GLN GLN A . n A 1 37 GLN 37 56 56 GLN GLN A . n A 1 38 ASN 38 57 57 ASN ASN A . n A 1 39 VAL 39 58 58 VAL VAL A . n A 1 40 GLU 40 59 59 GLU GLU A . n A 1 41 ARG 41 60 60 ARG ARG A . n A 1 42 LEU 42 61 61 LEU LEU A . n A 1 43 SER 43 62 62 SER SER A . n A 1 44 GLU 44 63 63 GLU GLU A . n A 1 45 LEU 45 64 64 LEU LEU A . n A 1 46 VAL 46 65 65 VAL VAL A . n A 1 47 GLN 47 66 66 GLN GLN A . n A 1 48 ALA 48 67 67 ALA ALA A . n A 1 49 VAL 49 68 68 VAL VAL A . n A 1 50 SER 50 69 69 SER SER A . n A 1 51 ASP 51 70 70 ASP ASP A . n A 1 52 PRO 52 71 71 PRO PRO A . n A 1 53 SER 53 72 72 SER SER A . n A 1 54 SER 54 73 73 SER SER A . n A 1 55 PRO 55 74 74 PRO PRO A . n A 1 56 GLN 56 75 75 GLN GLN A . n A 1 57 TYR 57 76 76 TYR TYR A . n A 1 58 GLY 58 77 77 GLY GLY A . n A 1 59 LYS 59 78 78 LYS LYS A . n A 1 60 TYR 60 79 79 TYR TYR A . n A 1 61 LEU 61 80 80 LEU LEU A . n A 1 62 THR 62 81 81 THR THR A . n A 1 63 LEU 63 82 82 LEU LEU A . n A 1 64 GLU 64 83 83 GLU GLU A . n A 1 65 ASN 65 84 84 ASN ASN A . n A 1 66 VAL 66 85 85 VAL VAL A . n A 1 67 ALA 67 86 86 ALA ALA A . n A 1 68 ASP 68 87 87 ASP ASP A . n A 1 69 LEU 69 88 88 LEU LEU A . n A 1 70 VAL 70 89 89 VAL VAL A . n A 1 71 ARG 71 90 90 ARG ARG A . n A 1 72 PRO 72 91 91 PRO PRO A . n A 1 73 SER 73 92 92 SER SER A . n A 1 74 PRO 74 93 93 PRO PRO A . n A 1 75 LEU 75 94 94 LEU LEU A . n A 1 76 THR 76 95 95 THR THR A . n A 1 77 LEU 77 96 96 LEU LEU A . n A 1 78 HIS 78 97 97 HIS HIS A . n A 1 79 THR 79 98 98 THR THR A . n A 1 80 VAL 80 99 99 VAL VAL A . n A 1 81 GLN 81 100 100 GLN GLN A . n A 1 82 LYS 82 101 101 LYS LYS A . n A 1 83 TRP 83 102 102 TRP TRP A . n A 1 84 LEU 84 103 103 LEU LEU A . n A 1 85 LEU 85 104 104 LEU LEU A . n A 1 86 ALA 86 105 105 ALA ALA A . n A 1 87 ALA 87 106 106 ALA ALA A . n A 1 88 GLY 88 107 107 GLY GLY A . n A 1 89 ALA 89 108 108 ALA ALA A . n A 1 90 GLN 90 109 109 GLN GLN A . n A 1 91 LYS 91 110 110 LYS LYS A . n A 1 92 CYS 92 111 111 CYS CYS A . n A 1 93 HIS 93 112 112 HIS HIS A . n A 1 94 SER 94 113 113 SER SER A . n A 1 95 VAL 95 114 114 VAL VAL A . n A 1 96 ILE 96 115 115 ILE ILE A . n A 1 97 THR 97 116 116 THR THR A . n A 1 98 GLN 98 117 117 GLN GLN A . n A 1 99 ASP 99 118 118 ASP ASP A . n A 1 100 PHE 100 119 119 PHE PHE A . n A 1 101 LEU 101 120 120 LEU LEU A . n A 1 102 THR 102 121 121 THR THR A . n A 1 103 CYS 103 122 122 CYS CYS A . n A 1 104 TRP 104 123 123 TRP TRP A . n A 1 105 LEU 105 124 124 LEU LEU A . n A 1 106 SER 106 125 125 SER SER A . n A 1 107 ILE 107 126 126 ILE ILE A . n A 1 108 ARG 108 127 127 ARG ARG A . n A 1 109 GLN 109 128 128 GLN GLN A . n A 1 110 ALA 110 129 129 ALA ALA A . n A 1 111 GLU 111 130 130 GLU GLU A . n A 1 112 LEU 112 131 131 LEU LEU A . n A 1 113 LEU 113 132 132 LEU LEU A . n A 1 114 LEU 114 133 133 LEU LEU A . n A 1 115 PRO 115 134 134 PRO PRO A . n A 1 116 GLY 116 135 135 GLY GLY A . n A 1 117 ALA 117 136 136 ALA ALA A . n A 1 118 GLU 118 137 137 GLU GLU A . n A 1 119 PHE 119 138 138 PHE PHE A . n A 1 120 HIS 120 139 139 HIS HIS A . n A 1 121 HIS 121 140 140 HIS HIS A . n A 1 122 TYR 122 141 141 TYR TYR A . n A 1 123 VAL 123 142 142 VAL VAL A . n A 1 124 GLY 124 143 143 GLY GLY A . n A 1 125 GLY 125 144 144 GLY GLY A . n A 1 126 PRO 126 145 145 PRO PRO A . n A 1 127 THR 127 146 146 THR THR A . n A 1 128 GLU 128 147 147 GLU GLU A . n A 1 129 THR 129 148 148 THR THR A . n A 1 130 HIS 130 149 149 HIS HIS A . n A 1 131 VAL 131 150 150 VAL VAL A . n A 1 132 VAL 132 151 151 VAL VAL A . n A 1 133 ARG 133 152 152 ARG ARG A . n A 1 134 SER 134 153 153 SER SER A . n A 1 135 PRO 135 154 154 PRO PRO A . n A 1 136 HIS 136 155 155 HIS HIS A . n A 1 137 PRO 137 156 156 PRO PRO A . n A 1 138 TYR 138 157 157 TYR TYR A . n A 1 139 GLN 139 158 158 GLN GLN A . n A 1 140 LEU 140 159 159 LEU LEU A . n A 1 141 PRO 141 160 160 PRO PRO A . n A 1 142 GLN 142 161 161 GLN GLN A . n A 1 143 ALA 143 162 162 ALA ALA A . n A 1 144 LEU 144 163 163 LEU LEU A . n A 1 145 ALA 145 164 164 ALA ALA A . n A 1 146 PRO 146 165 165 PRO PRO A . n A 1 147 HIS 147 166 166 HIS HIS A . n A 1 148 VAL 148 167 167 VAL VAL A . n A 1 149 ASP 149 168 168 ASP ASP A . n A 1 150 PHE 150 169 169 PHE PHE A . n A 1 151 VAL 151 170 170 VAL VAL A . n A 1 152 GLY 152 171 171 GLY GLY A . n A 1 153 GLY 153 172 172 GLY GLY A . n A 1 154 LEU 154 173 173 LEU LEU A . n A 1 155 HIS 155 174 174 HIS HIS A . n A 1 156 ARG 156 175 175 ARG ARG A . n A 1 157 PHE 157 176 176 PHE PHE A . n A 1 158 PRO 158 177 177 PRO PRO A . n A 1 159 PRO 159 178 178 PRO PRO A . n A 1 160 THR 160 179 179 THR THR A . n A 1 161 SER 161 180 180 SER SER A . n A 1 162 SER 162 181 181 SER SER A . n A 1 163 LEU 163 182 182 LEU LEU A . n A 1 164 ARG 164 183 183 ARG ARG A . n A 1 165 GLN 165 184 184 GLN GLN A . n A 1 166 ARG 166 185 185 ARG ARG A . n A 1 167 PRO 167 186 186 PRO PRO A . n A 1 168 GLU 168 187 187 GLU GLU A . n A 1 169 PRO 169 188 188 PRO PRO A . n A 1 170 GLN 170 189 189 GLN GLN A . n A 1 171 VAL 171 190 190 VAL VAL A . n A 1 172 THR 172 191 191 THR THR A . n A 1 173 GLY 173 192 192 GLY GLY A . n A 1 174 THR 174 193 193 THR THR A . n A 1 175 VAL 175 194 194 VAL VAL A . n A 1 176 GLY 176 195 195 GLY GLY A . n A 1 177 LEU 177 196 196 LEU LEU A . n A 1 178 HIS 178 197 197 HIS HIS A . n A 1 179 LEU 179 198 198 LEU LEU A . n A 1 180 GLY 180 199 199 GLY GLY A . n A 1 181 VAL 181 200 200 VAL VAL A . n A 1 182 THR 182 201 201 THR THR A . n A 1 183 PRO 183 202 202 PRO PRO A . n A 1 184 SER 184 203 203 SER SER A . n A 1 185 VAL 185 204 204 VAL VAL A . n A 1 186 ILE 186 205 205 ILE ILE A . n A 1 187 ARG 187 206 206 ARG ARG A . n A 1 188 LYS 188 207 207 LYS LYS A . n A 1 189 ARG 189 208 208 ARG ARG A . n A 1 190 TYR 190 209 209 TYR TYR A . n A 1 191 ASN 191 210 210 ASN ASN A . n A 1 192 LEU 192 211 211 LEU LEU A . n A 1 193 THR 193 212 212 THR THR A . n A 1 194 SER 194 213 213 SER SER A . n A 1 195 GLN 195 214 214 GLN GLN A . n A 1 196 ASP 196 215 215 ASP ASP A . n A 1 197 VAL 197 216 216 VAL VAL A . n A 1 198 GLY 198 217 217 GLY GLY A . n A 1 199 SER 199 218 218 SER SER A . n A 1 200 GLY 200 219 219 GLY GLY A . n A 1 201 THR 201 220 220 THR THR A . n A 1 202 SER 202 221 221 SER SER A . n A 1 203 ASN 203 222 222 ASN ASN A . n A 1 204 ASN 204 223 223 ASN ASN A . n A 1 205 SER 205 224 224 SER SER A . n A 1 206 GLN 206 225 225 GLN GLN A . n A 1 207 ALA 207 226 226 ALA ALA A . n A 1 208 CYS 208 227 227 CYS CYS A . n A 1 209 ALA 209 228 228 ALA ALA A . n A 1 210 GLN 210 229 229 GLN GLN A . n A 1 211 PHE 211 230 230 PHE PHE A . n A 1 212 LEU 212 231 231 LEU LEU A . n A 1 213 GLU 213 232 232 GLU GLU A . n A 1 214 GLN 214 233 233 GLN GLN A . n A 1 215 TYR 215 234 234 TYR TYR A . n A 1 216 PHE 216 235 235 PHE PHE A . n A 1 217 HIS 217 236 236 HIS HIS A . n A 1 218 ASP 218 237 237 ASP ASP A . n A 1 219 SER 219 238 238 SER SER A . n A 1 220 ASP 220 239 239 ASP ASP A . n A 1 221 LEU 221 240 240 LEU LEU A . n A 1 222 ALA 222 241 241 ALA ALA A . n A 1 223 GLN 223 242 242 GLN GLN A . n A 1 224 PHE 224 243 243 PHE PHE A . n A 1 225 MET 225 244 244 MET MET A . n A 1 226 ARG 226 245 245 ARG ARG A . n A 1 227 LEU 227 246 246 LEU LEU A . n A 1 228 PHE 228 247 247 PHE PHE A . n A 1 229 GLY 229 248 248 GLY GLY A . n A 1 230 GLY 230 249 249 GLY GLY A . n A 1 231 ASN 231 250 250 ASN ASN A . n A 1 232 PHE 232 251 251 PHE PHE A . n A 1 233 ALA 233 252 252 ALA ALA A . n A 1 234 HIS 234 253 253 HIS HIS A . n A 1 235 GLN 235 254 254 GLN GLN A . n A 1 236 ALA 236 255 255 ALA ALA A . n A 1 237 SER 237 256 256 SER SER A . n A 1 238 VAL 238 257 257 VAL VAL A . n A 1 239 ALA 239 258 258 ALA ALA A . n A 1 240 ARG 240 259 259 ARG ARG A . n A 1 241 VAL 241 260 260 VAL VAL A . n A 1 242 VAL 242 261 261 VAL VAL A . n A 1 243 GLY 243 262 262 GLY GLY A . n A 1 244 GLN 244 263 263 GLN GLN A . n A 1 245 GLN 245 264 264 GLN GLN A . n A 1 246 GLY 246 265 265 GLY GLY A . n A 1 247 ARG 247 266 266 ARG ARG A . n A 1 248 GLY 248 267 267 GLY GLY A . n A 1 249 ARG 249 268 268 ARG ARG A . n A 1 250 ALA 250 269 269 ALA ALA A . n A 1 251 GLY 251 270 270 GLY GLY A . n A 1 252 ILE 252 271 271 ILE ILE A . n A 1 253 GLU 253 272 272 GLU GLU A . n A 1 254 ALA 254 273 273 ALA ALA A . n A 1 255 SER 255 274 274 SER SER A . n A 1 256 LEU 256 275 275 LEU LEU A . n A 1 257 ASP 257 276 276 ASP ASP A . n A 1 258 VAL 258 277 277 VAL VAL A . n A 1 259 GLN 259 278 278 GLN GLN A . n A 1 260 TYR 260 279 279 TYR TYR A . n A 1 261 LEU 261 280 280 LEU LEU A . n A 1 262 MET 262 281 281 MET MET A . n A 1 263 SER 263 282 282 SER SER A . n A 1 264 ALA 264 283 283 ALA ALA A . n A 1 265 GLY 265 284 284 GLY GLY A . n A 1 266 ALA 266 285 285 ALA ALA A . n A 1 267 ASN 267 286 286 ASN ASN A . n A 1 268 ILE 268 287 287 ILE ILE A . n A 1 269 SER 269 288 288 SER SER A . n A 1 270 THR 270 289 289 THR THR A . n A 1 271 TRP 271 290 290 TRP TRP A . n A 1 272 VAL 272 291 291 VAL VAL A . n A 1 273 TYR 273 292 292 TYR TYR A . n A 1 274 SER 274 293 293 SER SER A . n A 1 275 SER 275 294 294 SER SER A . n A 1 276 PRO 276 295 295 PRO PRO A . n A 1 277 GLY 277 296 296 GLY GLY A . n A 1 278 ARG 278 297 297 ARG ARG A . n A 1 279 HIS 279 298 298 HIS HIS A . n A 1 280 GLU 280 299 299 GLU GLU A . n A 1 281 GLY 281 300 300 GLY GLY A . n A 1 282 GLN 282 301 301 GLN GLN A . n A 1 283 GLU 283 302 302 GLU GLU A . n A 1 284 PRO 284 303 303 PRO PRO A . n A 1 285 PHE 285 304 304 PHE PHE A . n A 1 286 LEU 286 305 305 LEU LEU A . n A 1 287 GLN 287 306 306 GLN GLN A . n A 1 288 TRP 288 307 307 TRP TRP A . n A 1 289 LEU 289 308 308 LEU LEU A . n A 1 290 MET 290 309 309 MET MET A . n A 1 291 LEU 291 310 310 LEU LEU A . n A 1 292 LEU 292 311 311 LEU LEU A . n A 1 293 SER 293 312 312 SER SER A . n A 1 294 ASN 294 313 313 ASN ASN A . n A 1 295 GLU 295 314 314 GLU GLU A . n A 1 296 SER 296 315 315 SER SER A . n A 1 297 ALA 297 316 316 ALA ALA A . n A 1 298 LEU 298 317 317 LEU LEU A . n A 1 299 PRO 299 318 318 PRO PRO A . n A 1 300 HIS 300 319 319 HIS HIS A . n A 1 301 VAL 301 320 320 VAL VAL A . n A 1 302 HIS 302 321 321 HIS HIS A . n A 1 303 THR 303 322 322 THR THR A . n A 1 304 VAL 304 323 323 VAL VAL A . n A 1 305 SER 305 324 324 SER SER A . n A 1 306 TYR 306 325 325 TYR TYR A . n A 1 307 GLY 307 326 326 GLY GLY A . n A 1 308 ASP 308 327 327 ASP ASP A . n A 1 309 ASP 309 328 328 ASP ASP A . n A 1 310 GLU 310 329 329 GLU GLU A . n A 1 311 ASP 311 330 330 ASP ASP A . n A 1 312 SER 312 331 331 SER SER A . n A 1 313 LEU 313 332 332 LEU LEU A . n A 1 314 SER 314 333 333 SER SER A . n A 1 315 SER 315 334 334 SER SER A . n A 1 316 ALA 316 335 335 ALA ALA A . n A 1 317 TYR 317 336 336 TYR TYR A . n A 1 318 ILE 318 337 337 ILE ILE A . n A 1 319 GLN 319 338 338 GLN GLN A . n A 1 320 ARG 320 339 339 ARG ARG A . n A 1 321 VAL 321 340 340 VAL VAL A . n A 1 322 ASN 322 341 341 ASN ASN A . n A 1 323 THR 323 342 342 THR THR A . n A 1 324 GLU 324 343 343 GLU GLU A . n A 1 325 LEU 325 344 344 LEU LEU A . n A 1 326 MET 326 345 345 MET MET A . n A 1 327 LYS 327 346 346 LYS LYS A . n A 1 328 ALA 328 347 347 ALA ALA A . n A 1 329 ALA 329 348 348 ALA ALA A . n A 1 330 ALA 330 349 349 ALA ALA A . n A 1 331 ARG 331 350 350 ARG ARG A . n A 1 332 GLY 332 351 351 GLY GLY A . n A 1 333 LEU 333 352 352 LEU LEU A . n A 1 334 THR 334 353 353 THR THR A . n A 1 335 LEU 335 354 354 LEU LEU A . n A 1 336 LEU 336 355 355 LEU LEU A . n A 1 337 PHE 337 356 356 PHE PHE A . n A 1 338 ALA 338 357 357 ALA ALA A . n A 1 339 SER 339 358 358 SER SER A . n A 1 340 GLY 340 359 359 GLY GLY A . n A 1 341 ASP 341 360 360 ASP ASP A . n A 1 342 SER 342 361 361 SER SER A . n A 1 343 GLY 343 362 362 GLY GLY A . n A 1 344 ALA 344 363 363 ALA ALA A . n A 1 345 GLY 345 364 364 GLY GLY A . n A 1 346 CYS 346 365 365 CYS CYS A . n A 1 347 TRP 347 366 366 TRP TRP A . n A 1 348 SER 348 367 367 SER SER A . n A 1 349 VAL 349 368 368 VAL VAL A . n A 1 350 SER 350 369 369 SER SER A . n A 1 351 GLY 351 370 370 GLY GLY A . n A 1 352 ARG 352 371 371 ARG ARG A . n A 1 353 HIS 353 372 372 HIS HIS A . n A 1 354 GLN 354 373 373 GLN GLN A . n A 1 355 PHE 355 374 374 PHE PHE A . n A 1 356 ARG 356 375 375 ARG ARG A . n A 1 357 PRO 357 376 376 PRO PRO A . n A 1 358 THR 358 377 377 THR THR A . n A 1 359 PHE 359 378 378 PHE PHE A . n A 1 360 PRO 360 379 379 PRO PRO A . n A 1 361 ALA 361 380 380 ALA ALA A . n A 1 362 SER 362 381 381 SER SER A . n A 1 363 SER 363 382 382 SER SER A . n A 1 364 PRO 364 383 383 PRO PRO A . n A 1 365 TYR 365 384 384 TYR TYR A . n A 1 366 VAL 366 385 385 VAL VAL A . n A 1 367 THR 367 386 386 THR THR A . n A 1 368 THR 368 387 387 THR THR A . n A 1 369 VAL 369 388 388 VAL VAL A . n A 1 370 GLY 370 389 389 GLY GLY A . n A 1 371 GLY 371 390 390 GLY GLY A . n A 1 372 THR 372 391 391 THR THR A . n A 1 373 SER 373 392 392 SER SER A . n A 1 374 PHE 374 393 393 PHE PHE A . n A 1 375 GLN 375 394 394 GLN GLN A . n A 1 376 GLU 376 395 395 GLU GLU A . n A 1 377 PRO 377 396 396 PRO PRO A . n A 1 378 PHE 378 397 397 PHE PHE A . n A 1 379 LEU 379 398 398 LEU LEU A . n A 1 380 ILE 380 399 399 ILE ILE A . n A 1 381 THR 381 400 400 THR THR A . n A 1 382 ASN 382 401 401 ASN ASN A . n A 1 383 GLU 383 402 402 GLU GLU A . n A 1 384 ILE 384 403 403 ILE ILE A . n A 1 385 VAL 385 404 404 VAL VAL A . n A 1 386 ASP 386 405 405 ASP ASP A . n A 1 387 TYR 387 406 406 TYR TYR A . n A 1 388 ILE 388 407 407 ILE ILE A . n A 1 389 SER 389 408 408 SER SER A . n A 1 390 GLY 390 409 409 GLY GLY A . n A 1 391 GLY 391 410 410 GLY GLY A . n A 1 392 GLY 392 411 411 GLY GLY A . n A 1 393 PHE 393 412 412 PHE PHE A . n A 1 394 SER 394 413 413 SER SER A . n A 1 395 ASN 395 414 414 ASN ASN A . n A 1 396 VAL 396 415 415 VAL VAL A . n A 1 397 PHE 397 416 416 PHE PHE A . n A 1 398 PRO 398 417 417 PRO PRO A . n A 1 399 ARG 399 418 418 ARG ARG A . n A 1 400 PRO 400 419 419 PRO PRO A . n A 1 401 SER 401 420 420 SER SER A . n A 1 402 TYR 402 421 421 TYR TYR A . n A 1 403 GLN 403 422 422 GLN GLN A . n A 1 404 GLU 404 423 423 GLU GLU A . n A 1 405 GLU 405 424 424 GLU GLU A . n A 1 406 ALA 406 425 425 ALA ALA A . n A 1 407 VAL 407 426 426 VAL VAL A . n A 1 408 THR 408 427 427 THR THR A . n A 1 409 LYS 409 428 428 LYS LYS A . n A 1 410 PHE 410 429 429 PHE PHE A . n A 1 411 LEU 411 430 430 LEU LEU A . n A 1 412 SER 412 431 431 SER SER A . n A 1 413 SER 413 432 432 SER SER A . n A 1 414 SER 414 433 433 SER SER A . n A 1 415 PRO 415 434 434 PRO PRO A . n A 1 416 HIS 416 435 435 HIS HIS A . n A 1 417 LEU 417 436 436 LEU LEU A . n A 1 418 PRO 418 437 437 PRO PRO A . n A 1 419 PRO 419 438 438 PRO PRO A . n A 1 420 SER 420 439 439 SER SER A . n A 1 421 SER 421 440 440 SER SER A . n A 1 422 TYR 422 441 441 TYR TYR A . n A 1 423 PHE 423 442 442 PHE PHE A . n A 1 424 ASN 424 443 443 ASN ASN A . n A 1 425 ALA 425 444 444 ALA ALA A . n A 1 426 SER 426 445 445 SER SER A . n A 1 427 GLY 427 446 446 GLY GLY A . n A 1 428 ARG 428 447 447 ARG ARG A . n A 1 429 ALA 429 448 448 ALA ALA A . n A 1 430 TYR 430 449 449 TYR TYR A . n A 1 431 PRO 431 450 450 PRO PRO A . n A 1 432 ASP 432 451 451 ASP ASP A . n A 1 433 VAL 433 452 452 VAL VAL A . n A 1 434 ALA 434 453 453 ALA ALA A . n A 1 435 ALA 435 454 454 ALA ALA A . n A 1 436 LEU 436 455 455 LEU LEU A . n A 1 437 SER 437 456 456 SER SER A . n A 1 438 ASP 438 457 457 ASP ASP A . n A 1 439 GLY 439 458 458 GLY GLY A . n A 1 440 TYR 440 459 459 TYR TYR A . n A 1 441 TRP 441 460 460 TRP TRP A . n A 1 442 VAL 442 461 461 VAL VAL A . n A 1 443 VAL 443 462 462 VAL VAL A . n A 1 444 SER 444 463 463 SER SER A . n A 1 445 ASN 445 464 464 ASN ASN A . n A 1 446 ARG 446 465 465 ARG ARG A . n A 1 447 VAL 447 466 466 VAL VAL A . n A 1 448 PRO 448 467 467 PRO PRO A . n A 1 449 ILE 449 468 468 ILE ILE A . n A 1 450 PRO 450 469 469 PRO PRO A . n A 1 451 TRP 451 470 470 TRP TRP A . n A 1 452 VAL 452 471 471 VAL VAL A . n A 1 453 SER 453 472 472 SER SER A . n A 1 454 GLY 454 473 473 GLY GLY A . n A 1 455 THR 455 474 474 THR THR A . n A 1 456 SER 456 475 475 SER SER A . n A 1 457 ALA 457 476 476 ALA ALA A . n A 1 458 SER 458 477 477 SER SER A . n A 1 459 THR 459 478 478 THR THR A . n A 1 460 PRO 460 479 479 PRO PRO A . n A 1 461 VAL 461 480 480 VAL VAL A . n A 1 462 PHE 462 481 481 PHE PHE A . n A 1 463 GLY 463 482 482 GLY GLY A . n A 1 464 GLY 464 483 483 GLY GLY A . n A 1 465 ILE 465 484 484 ILE ILE A . n A 1 466 LEU 466 485 485 LEU LEU A . n A 1 467 SER 467 486 486 SER SER A . n A 1 468 LEU 468 487 487 LEU LEU A . n A 1 469 ILE 469 488 488 ILE ILE A . n A 1 470 ASN 470 489 489 ASN ASN A . n A 1 471 GLU 471 490 490 GLU GLU A . n A 1 472 HIS 472 491 491 HIS HIS A . n A 1 473 ARG 473 492 492 ARG ARG A . n A 1 474 ILE 474 493 493 ILE ILE A . n A 1 475 LEU 475 494 494 LEU LEU A . n A 1 476 SER 476 495 495 SER SER A . n A 1 477 GLY 477 496 496 GLY GLY A . n A 1 478 ARG 478 497 497 ARG ARG A . n A 1 479 PRO 479 498 498 PRO PRO A . n A 1 480 PRO 480 499 499 PRO PRO A . n A 1 481 LEU 481 500 500 LEU LEU A . n A 1 482 GLY 482 501 501 GLY GLY A . n A 1 483 PHE 483 502 502 PHE PHE A . n A 1 484 LEU 484 503 503 LEU LEU A . n A 1 485 ASN 485 504 504 ASN ASN A . n A 1 486 PRO 486 505 505 PRO PRO A . n A 1 487 ARG 487 506 506 ARG ARG A . n A 1 488 LEU 488 507 507 LEU LEU A . n A 1 489 TYR 489 508 508 TYR TYR A . n A 1 490 GLN 490 509 509 GLN GLN A . n A 1 491 GLN 491 510 510 GLN GLN A . n A 1 492 HIS 492 511 511 HIS HIS A . n A 1 493 GLY 493 512 512 GLY GLY A . n A 1 494 ALA 494 513 513 ALA ALA A . n A 1 495 GLY 495 514 514 GLY GLY A . n A 1 496 LEU 496 515 515 LEU LEU A . n A 1 497 PHE 497 516 516 PHE PHE A . n A 1 498 ASP 498 517 517 ASP ASP A . n A 1 499 VAL 499 518 518 VAL VAL A . n A 1 500 THR 500 519 519 THR THR A . n A 1 501 ARG 501 520 520 ARG ARG A . n A 1 502 GLY 502 521 521 GLY GLY A . n A 1 503 CYS 503 522 522 CYS CYS A . n A 1 504 HIS 504 523 523 HIS HIS A . n A 1 505 GLU 505 524 524 GLU GLU A . n A 1 506 SER 506 525 525 SER SER A . n A 1 507 CYS 507 526 526 CYS CYS A . n A 1 508 LEU 508 527 527 LEU LEU A . n A 1 509 ASP 509 528 528 ASP ASP A . n A 1 510 GLU 510 529 529 GLU GLU A . n A 1 511 GLU 511 530 530 GLU GLU A . n A 1 512 VAL 512 531 531 VAL VAL A . n A 1 513 GLU 513 532 532 GLU GLU A . n A 1 514 GLY 514 533 533 GLY GLY A . n A 1 515 GLN 515 534 534 GLN GLN A . n A 1 516 GLY 516 535 535 GLY GLY A . n A 1 517 PHE 517 536 536 PHE PHE A . n A 1 518 CYS 518 537 537 CYS CYS A . n A 1 519 SER 519 538 538 SER SER A . n A 1 520 GLY 520 539 539 GLY GLY A . n A 1 521 PRO 521 540 540 PRO PRO A . n A 1 522 GLY 522 541 541 GLY GLY A . n A 1 523 TRP 523 542 542 TRP TRP A . n A 1 524 ASP 524 543 543 ASP ASP A . n A 1 525 PRO 525 544 544 PRO PRO A . n A 1 526 VAL 526 545 545 VAL VAL A . n A 1 527 THR 527 546 546 THR THR A . n A 1 528 GLY 528 547 547 GLY GLY A . n A 1 529 TRP 529 548 548 TRP TRP A . n A 1 530 GLY 530 549 549 GLY GLY A . n A 1 531 THR 531 550 550 THR THR A . n A 1 532 PRO 532 551 551 PRO PRO A . n A 1 533 ASN 533 552 552 ASN ASN A . n A 1 534 PHE 534 553 553 PHE PHE A . n A 1 535 PRO 535 554 554 PRO PRO A . n A 1 536 ALA 536 555 555 ALA ALA A . n A 1 537 LEU 537 556 556 LEU LEU A . n A 1 538 LEU 538 557 557 LEU LEU A . n A 1 539 LYS 539 558 558 LYS LYS A . n A 1 540 THR 540 559 559 THR THR A . n A 1 541 LEU 541 560 560 LEU LEU A . n A 1 542 LEU 542 561 561 LEU LEU A . n A 1 543 ASN 543 562 562 ASN ASN A . n A 1 544 PRO 544 563 563 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1 1 CA CA A . C 3 NAG 1 564 564 NAG NAG A . D 3 NAG 1 565 565 NAG NAG A . E 3 NAG 1 566 566 NAG NAG A . F 3 NAG 1 567 567 NAG NAG A . G 4 EDO 1 701 701 EDO EDO A . H 4 EDO 1 702 702 EDO EDO A . I 4 EDO 1 703 703 EDO EDO A . J 4 EDO 1 704 704 EDO EDO A . K 5 HOH 1 705 705 HOH HOH A . K 5 HOH 2 706 706 HOH HOH A . K 5 HOH 3 707 707 HOH HOH A . K 5 HOH 4 708 708 HOH HOH A . K 5 HOH 5 709 709 HOH HOH A . K 5 HOH 6 710 710 HOH HOH A . K 5 HOH 7 711 711 HOH HOH A . K 5 HOH 8 712 712 HOH HOH A . K 5 HOH 9 713 713 HOH HOH A . K 5 HOH 10 714 714 HOH HOH A . K 5 HOH 11 715 715 HOH HOH A . K 5 HOH 12 716 716 HOH HOH A . K 5 HOH 13 717 717 HOH HOH A . K 5 HOH 14 718 718 HOH HOH A . K 5 HOH 15 719 719 HOH HOH A . K 5 HOH 16 720 720 HOH HOH A . K 5 HOH 17 721 721 HOH HOH A . K 5 HOH 18 722 722 HOH HOH A . K 5 HOH 19 723 723 HOH HOH A . K 5 HOH 20 724 724 HOH HOH A . K 5 HOH 21 725 725 HOH HOH A . K 5 HOH 22 726 726 HOH HOH A . K 5 HOH 23 727 727 HOH HOH A . K 5 HOH 24 728 728 HOH HOH A . K 5 HOH 25 729 729 HOH HOH A . K 5 HOH 26 730 730 HOH HOH A . K 5 HOH 27 731 731 HOH HOH A . K 5 HOH 28 732 732 HOH HOH A . K 5 HOH 29 733 733 HOH HOH A . K 5 HOH 30 734 734 HOH HOH A . K 5 HOH 31 735 735 HOH HOH A . K 5 HOH 32 736 736 HOH HOH A . K 5 HOH 33 737 737 HOH HOH A . K 5 HOH 34 738 738 HOH HOH A . K 5 HOH 35 739 739 HOH HOH A . K 5 HOH 36 740 740 HOH HOH A . K 5 HOH 37 741 741 HOH HOH A . K 5 HOH 38 742 742 HOH HOH A . K 5 HOH 39 743 743 HOH HOH A . K 5 HOH 40 744 744 HOH HOH A . K 5 HOH 41 745 745 HOH HOH A . K 5 HOH 42 746 746 HOH HOH A . K 5 HOH 43 747 747 HOH HOH A . K 5 HOH 44 748 748 HOH HOH A . K 5 HOH 45 749 749 HOH HOH A . K 5 HOH 46 750 750 HOH HOH A . K 5 HOH 47 751 751 HOH HOH A . K 5 HOH 48 752 752 HOH HOH A . K 5 HOH 49 753 753 HOH HOH A . K 5 HOH 50 754 754 HOH HOH A . K 5 HOH 51 755 755 HOH HOH A . K 5 HOH 52 756 756 HOH HOH A . K 5 HOH 53 757 757 HOH HOH A . K 5 HOH 54 758 758 HOH HOH A . K 5 HOH 55 759 759 HOH HOH A . K 5 HOH 56 760 760 HOH HOH A . K 5 HOH 57 761 761 HOH HOH A . K 5 HOH 58 762 762 HOH HOH A . K 5 HOH 59 763 763 HOH HOH A . K 5 HOH 60 764 764 HOH HOH A . K 5 HOH 61 765 765 HOH HOH A . K 5 HOH 62 766 766 HOH HOH A . K 5 HOH 63 767 767 HOH HOH A . K 5 HOH 64 768 768 HOH HOH A . K 5 HOH 65 769 769 HOH HOH A . K 5 HOH 66 770 770 HOH HOH A . K 5 HOH 67 771 771 HOH HOH A . K 5 HOH 68 772 772 HOH HOH A . K 5 HOH 69 773 773 HOH HOH A . K 5 HOH 70 774 774 HOH HOH A . K 5 HOH 71 775 775 HOH HOH A . K 5 HOH 72 776 776 HOH HOH A . K 5 HOH 73 777 777 HOH HOH A . K 5 HOH 74 778 778 HOH HOH A . K 5 HOH 75 779 779 HOH HOH A . K 5 HOH 76 780 780 HOH HOH A . K 5 HOH 77 781 781 HOH HOH A . K 5 HOH 78 782 782 HOH HOH A . K 5 HOH 79 783 783 HOH HOH A . K 5 HOH 80 784 784 HOH HOH A . K 5 HOH 81 785 785 HOH HOH A . K 5 HOH 82 786 786 HOH HOH A . K 5 HOH 83 787 787 HOH HOH A . K 5 HOH 84 788 788 HOH HOH A . K 5 HOH 85 789 789 HOH HOH A . K 5 HOH 86 790 790 HOH HOH A . K 5 HOH 87 791 791 HOH HOH A . K 5 HOH 88 792 792 HOH HOH A . K 5 HOH 89 793 793 HOH HOH A . K 5 HOH 90 794 794 HOH HOH A . K 5 HOH 91 795 795 HOH HOH A . K 5 HOH 92 796 796 HOH HOH A . K 5 HOH 93 797 797 HOH HOH A . K 5 HOH 94 798 798 HOH HOH A . K 5 HOH 95 799 799 HOH HOH A . K 5 HOH 96 800 800 HOH HOH A . K 5 HOH 97 801 801 HOH HOH A . K 5 HOH 98 802 802 HOH HOH A . K 5 HOH 99 803 803 HOH HOH A . K 5 HOH 100 804 804 HOH HOH A . K 5 HOH 101 805 805 HOH HOH A . K 5 HOH 102 806 806 HOH HOH A . K 5 HOH 103 807 807 HOH HOH A . K 5 HOH 104 808 808 HOH HOH A . K 5 HOH 105 809 809 HOH HOH A . K 5 HOH 106 810 810 HOH HOH A . K 5 HOH 107 811 811 HOH HOH A . K 5 HOH 108 812 812 HOH HOH A . K 5 HOH 109 813 813 HOH HOH A . K 5 HOH 110 814 814 HOH HOH A . K 5 HOH 111 815 815 HOH HOH A . K 5 HOH 112 816 816 HOH HOH A . K 5 HOH 113 817 817 HOH HOH A . K 5 HOH 114 818 818 HOH HOH A . K 5 HOH 115 819 819 HOH HOH A . K 5 HOH 116 820 820 HOH HOH A . K 5 HOH 117 821 821 HOH HOH A . K 5 HOH 118 822 822 HOH HOH A . K 5 HOH 119 823 823 HOH HOH A . K 5 HOH 120 824 824 HOH HOH A . K 5 HOH 121 825 825 HOH HOH A . K 5 HOH 122 826 826 HOH HOH A . K 5 HOH 123 827 827 HOH HOH A . K 5 HOH 124 828 828 HOH HOH A . K 5 HOH 125 829 829 HOH HOH A . K 5 HOH 126 830 830 HOH HOH A . K 5 HOH 127 831 831 HOH HOH A . K 5 HOH 128 832 832 HOH HOH A . K 5 HOH 129 833 833 HOH HOH A . K 5 HOH 130 834 834 HOH HOH A . K 5 HOH 131 835 835 HOH HOH A . K 5 HOH 132 836 836 HOH HOH A . K 5 HOH 133 837 837 HOH HOH A . K 5 HOH 134 838 838 HOH HOH A . K 5 HOH 135 839 839 HOH HOH A . K 5 HOH 136 840 840 HOH HOH A . K 5 HOH 137 841 841 HOH HOH A . K 5 HOH 138 842 842 HOH HOH A . K 5 HOH 139 843 843 HOH HOH A . K 5 HOH 140 844 844 HOH HOH A . K 5 HOH 141 845 845 HOH HOH A . K 5 HOH 142 846 846 HOH HOH A . K 5 HOH 143 847 847 HOH HOH A . K 5 HOH 144 848 848 HOH HOH A . K 5 HOH 145 849 849 HOH HOH A . K 5 HOH 146 850 850 HOH HOH A . K 5 HOH 147 851 851 HOH HOH A . K 5 HOH 148 852 852 HOH HOH A . K 5 HOH 149 853 853 HOH HOH A . K 5 HOH 150 854 854 HOH HOH A . K 5 HOH 151 855 855 HOH HOH A . K 5 HOH 152 856 856 HOH HOH A . K 5 HOH 153 857 857 HOH HOH A . K 5 HOH 154 858 858 HOH HOH A . K 5 HOH 155 859 859 HOH HOH A . K 5 HOH 156 860 860 HOH HOH A . K 5 HOH 157 861 861 HOH HOH A . K 5 HOH 158 862 862 HOH HOH A . K 5 HOH 159 863 863 HOH HOH A . K 5 HOH 160 864 864 HOH HOH A . K 5 HOH 161 865 865 HOH HOH A . K 5 HOH 162 866 866 HOH HOH A . K 5 HOH 163 867 867 HOH HOH A . K 5 HOH 164 868 868 HOH HOH A . K 5 HOH 165 869 869 HOH HOH A . K 5 HOH 166 870 870 HOH HOH A . K 5 HOH 167 871 871 HOH HOH A . K 5 HOH 168 872 872 HOH HOH A . K 5 HOH 169 873 873 HOH HOH A . K 5 HOH 170 874 874 HOH HOH A . K 5 HOH 171 875 875 HOH HOH A . K 5 HOH 172 876 876 HOH HOH A . K 5 HOH 173 877 877 HOH HOH A . K 5 HOH 174 878 878 HOH HOH A . K 5 HOH 175 879 879 HOH HOH A . K 5 HOH 176 880 880 HOH HOH A . K 5 HOH 177 881 881 HOH HOH A . K 5 HOH 178 882 882 HOH HOH A . K 5 HOH 179 883 883 HOH HOH A . K 5 HOH 180 884 884 HOH HOH A . K 5 HOH 181 885 885 HOH HOH A . K 5 HOH 182 886 886 HOH HOH A . K 5 HOH 183 887 887 HOH HOH A . K 5 HOH 184 888 888 HOH HOH A . K 5 HOH 185 889 889 HOH HOH A . K 5 HOH 186 890 890 HOH HOH A . K 5 HOH 187 891 891 HOH HOH A . K 5 HOH 188 892 892 HOH HOH A . K 5 HOH 189 893 893 HOH HOH A . K 5 HOH 190 894 894 HOH HOH A . K 5 HOH 191 895 895 HOH HOH A . K 5 HOH 192 896 896 HOH HOH A . K 5 HOH 193 897 897 HOH HOH A . K 5 HOH 194 898 898 HOH HOH A . K 5 HOH 195 899 899 HOH HOH A . K 5 HOH 196 900 900 HOH HOH A . K 5 HOH 197 901 901 HOH HOH A . K 5 HOH 198 902 902 HOH HOH A . K 5 HOH 199 903 903 HOH HOH A . K 5 HOH 200 904 904 HOH HOH A . K 5 HOH 201 905 905 HOH HOH A . K 5 HOH 202 906 906 HOH HOH A . K 5 HOH 203 907 907 HOH HOH A . K 5 HOH 204 908 908 HOH HOH A . K 5 HOH 205 909 909 HOH HOH A . K 5 HOH 206 910 910 HOH HOH A . K 5 HOH 207 911 911 HOH HOH A . K 5 HOH 208 912 912 HOH HOH A . K 5 HOH 209 913 913 HOH HOH A . K 5 HOH 210 914 914 HOH HOH A . K 5 HOH 211 915 915 HOH HOH A . K 5 HOH 212 916 916 HOH HOH A . K 5 HOH 213 917 917 HOH HOH A . K 5 HOH 214 918 918 HOH HOH A . K 5 HOH 215 919 919 HOH HOH A . K 5 HOH 216 920 920 HOH HOH A . K 5 HOH 217 921 921 HOH HOH A . K 5 HOH 218 922 922 HOH HOH A . K 5 HOH 219 923 923 HOH HOH A . K 5 HOH 220 924 924 HOH HOH A . K 5 HOH 221 925 925 HOH HOH A . K 5 HOH 222 926 926 HOH HOH A . K 5 HOH 223 927 927 HOH HOH A . K 5 HOH 224 928 928 HOH HOH A . K 5 HOH 225 929 929 HOH HOH A . K 5 HOH 226 930 930 HOH HOH A . K 5 HOH 227 931 931 HOH HOH A . K 5 HOH 228 932 932 HOH HOH A . K 5 HOH 229 933 933 HOH HOH A . K 5 HOH 230 934 934 HOH HOH A . K 5 HOH 231 935 935 HOH HOH A . K 5 HOH 232 936 936 HOH HOH A . K 5 HOH 233 937 937 HOH HOH A . K 5 HOH 234 938 938 HOH HOH A . K 5 HOH 235 939 939 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 5 SOLVE . ? ? ? ? phasing ? ? ? 6 # _cell.entry_id 3EDY _cell.length_a 59.807 _cell.length_b 93.173 _cell.length_c 102.479 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EDY _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3EDY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.temp 278 _exptl_crystal_grow.pdbx_details 'PEG 6000, citrate, pH 5.0, vapor diffusion, hanging drop, temperature 278K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2007-10-02 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'horizontally deflecting and focusing crystal preceded by a vertically focusing mirror' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97908 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_wavelength_list 0.97908 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C # _reflns.entry_id 3EDY _reflns.d_resolution_high 1.830 _reflns.d_resolution_low 50.000 _reflns.number_obs 50890 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_chi_squared 1.043 _reflns.pdbx_redundancy 7.000 _reflns.percent_possible_obs 99.100 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 48561 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 37.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.83 _reflns_shell.d_res_low 1.90 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.457 _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.644 _reflns_shell.pdbx_redundancy 4.80 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4675 _reflns_shell.percent_possible_all 93.10 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3EDY _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 29.720 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.010 _refine.ls_number_reflns_obs 48127 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_R_work 0.179 _refine.ls_wR_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.205 _refine.ls_wR_factor_R_free 0.214 _refine.ls_percent_reflns_R_free 2.600 _refine.ls_number_reflns_R_free 1231 _refine.B_iso_mean 26.882 _refine.aniso_B[1][1] -0.030 _refine.aniso_B[2][2] 0.130 _refine.aniso_B[3][3] -0.100 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.overall_SU_R_Cruickshank_DPI 0.141 _refine.overall_SU_R_free 0.125 _refine.pdbx_overall_ESU_R 0.134 _refine.pdbx_overall_ESU_R_Free 0.120 _refine.overall_SU_ML 0.082 _refine.overall_SU_B 5.220 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.871 _refine.B_iso_max 63.13 _refine.B_iso_min 13.10 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I 0.00 _refine.ls_number_reflns_all 48561 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4195 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 73 _refine_hist.number_atoms_solvent 235 _refine_hist.number_atoms_total 4503 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 29.720 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 4428 0.011 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 2987 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 6046 1.263 1.966 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 7204 1.038 3.002 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 543 7.328 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 200 36.405 23.300 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 638 13.894 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 30 15.069 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 656 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 4948 0.012 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 912 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 910 0.226 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 3163 0.227 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 2189 0.191 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 2223 0.106 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 234 0.146 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 5 0.135 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 16 0.188 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 63 0.291 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 12 0.109 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2788 1.466 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 1093 0.462 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4395 2.165 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1870 3.351 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1651 4.871 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 65.700 _refine_ls_shell.number_reflns_R_work 2319 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.193 _refine_ls_shell.R_factor_R_free 0.240 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2367 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EDY _struct.title 'Crystal Structure of the Precursor Form of Human Tripeptidyl-Peptidase 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EDY _struct_keywords.text ;protease, TPP1, sedolisin, Batten disease, LINCL, zymogen, prodomain, exopeptidase, endopeptidase, S53 family, cln2, catalytic triad, oxyanion hole, Disease mutation, Epilepsy, Glycoprotein, Hydrolase, Lysosome, Neuronal ceroid lipofuscinosis, Serine protease ; _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TPP1_HUMAN _struct_ref.pdbx_db_accession O14773 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTV QKWLLAAGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPT SSLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDLAQFMRLFGGNFAHQASVAR VVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQR VNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRP SYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPP LGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLLNP ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EDY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 544 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O14773 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 563 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 563 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 38 ? ASP A 51 ? ASN A 57 ASP A 70 1 ? 14 HELX_P HELX_P2 2 THR A 62 ? ARG A 71 ? THR A 81 ARG A 90 1 ? 10 HELX_P HELX_P3 3 SER A 73 ? GLY A 88 ? SER A 92 GLY A 107 1 ? 16 HELX_P HELX_P4 4 ILE A 107 ? LEU A 114 ? ILE A 126 LEU A 133 1 ? 8 HELX_P HELX_P5 5 PRO A 141 ? ALA A 145 ? PRO A 160 ALA A 164 5 ? 5 HELX_P HELX_P6 6 THR A 182 ? TYR A 190 ? THR A 201 TYR A 209 1 ? 9 HELX_P HELX_P7 7 HIS A 217 ? GLY A 229 ? HIS A 236 GLY A 248 1 ? 13 HELX_P HELX_P8 8 GLY A 251 ? GLY A 265 ? GLY A 270 GLY A 284 1 ? 15 HELX_P HELX_P9 9 GLU A 283 ? SER A 293 ? GLU A 302 SER A 312 1 ? 11 HELX_P HELX_P10 10 ASP A 311 ? LEU A 313 ? ASP A 330 LEU A 332 5 ? 3 HELX_P HELX_P11 11 SER A 314 ? ARG A 331 ? SER A 333 ARG A 350 1 ? 18 HELX_P HELX_P12 12 PRO A 400 ? TYR A 402 ? PRO A 419 TYR A 421 5 ? 3 HELX_P HELX_P13 13 GLN A 403 ? SER A 414 ? GLN A 422 SER A 433 1 ? 12 HELX_P HELX_P14 14 PRO A 419 ? PHE A 423 ? PRO A 438 PHE A 442 5 ? 5 HELX_P HELX_P15 15 GLY A 454 ? SER A 476 ? GLY A 473 SER A 495 1 ? 23 HELX_P HELX_P16 16 LEU A 484 ? GLN A 491 ? LEU A 503 GLN A 510 1 ? 8 HELX_P HELX_P17 17 ASN A 533 ? THR A 540 ? ASN A 552 THR A 559 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 92 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 111 A CYS 122 1_555 ? ? ? ? ? ? ? 2.072 ? ? disulf2 disulf ? ? A CYS 346 SG ? ? ? 1_555 A CYS 507 SG ? ? A CYS 365 A CYS 526 1_555 ? ? ? ? ? ? ? 2.091 ? ? disulf3 disulf ? ? A CYS 503 SG ? ? ? 1_555 A CYS 518 SG ? ? A CYS 522 A CYS 537 1_555 ? ? ? ? ? ? ? 2.070 ? ? covale1 covale one ? A ASN 191 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 210 A NAG 564 1_555 ? ? ? ? ? ? ? 1.598 ? N-Glycosylation covale2 covale one ? A ASN 267 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 286 A NAG 565 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation covale3 covale one ? A ASN 294 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 313 A NAG 566 1_555 ? ? ? ? ? ? ? 1.548 ? N-Glycosylation covale4 covale one ? A ASN 424 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 443 A NAG 567 1_555 ? ? ? ? ? ? ? 1.458 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG C . ? ASN A 191 ? NAG A 564 ? 1_555 ASN A 210 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG D . ? ASN A 267 ? NAG A 565 ? 1_555 ASN A 286 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 NAG E . ? ASN A 294 ? NAG A 566 ? 1_555 ASN A 313 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 NAG F . ? ASN A 424 ? NAG A 567 ? 1_555 ASN A 443 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 5 CYS A 92 ? CYS A 103 ? CYS A 111 ? 1_555 CYS A 122 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 346 ? CYS A 507 ? CYS A 365 ? 1_555 CYS A 526 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 503 ? CYS A 518 ? CYS A 522 ? 1_555 CYS A 537 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 359 A . ? PHE 378 A PRO 360 A ? PRO 379 A 1 8.61 2 TYR 430 A . ? TYR 449 A PRO 431 A ? PRO 450 A 1 24.78 3 ASN 543 A . ? ASN 562 A PRO 544 A ? PRO 563 A 1 0.77 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 7 ? D ? 7 ? E ? 2 ? F ? 2 ? G ? 2 ? H ? 2 ? I ? 2 ? J ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel C 5 6 ? parallel C 6 7 ? anti-parallel D 1 2 ? parallel D 2 3 ? parallel D 3 4 ? parallel D 4 5 ? parallel D 5 6 ? parallel D 6 7 ? parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel I 1 2 ? anti-parallel J 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 16 ? ARG A 21 ? TRP A 35 ARG A 40 A 2 HIS A 120 ? GLY A 124 ? HIS A 139 GLY A 143 A 3 THR A 129 ? ARG A 133 ? THR A 148 ARG A 152 B 1 GLN A 90 ? SER A 94 ? GLN A 109 SER A 113 B 2 PHE A 100 ? SER A 106 ? PHE A 119 SER A 125 B 3 GLU A 27 ? LEU A 34 ? GLU A 46 LEU A 53 B 4 VAL A 148 ? VAL A 151 ? VAL A 167 VAL A 170 C 1 ARG A 240 ? VAL A 242 ? ARG A 259 VAL A 261 C 2 SER A 269 ? TYR A 273 ? SER A 288 TYR A 292 C 3 SER A 205 ? GLN A 210 ? SER A 224 GLN A 229 C 4 VAL A 301 ? SER A 305 ? VAL A 320 SER A 324 C 5 THR A 334 ? ALA A 338 ? THR A 353 ALA A 357 C 6 THR A 367 ? PHE A 374 ? THR A 386 PHE A 393 C 7 GLU A 383 ? VAL A 385 ? GLU A 402 VAL A 404 D 1 ARG A 240 ? VAL A 242 ? ARG A 259 VAL A 261 D 2 SER A 269 ? TYR A 273 ? SER A 288 TYR A 292 D 3 SER A 205 ? GLN A 210 ? SER A 224 GLN A 229 D 4 VAL A 301 ? SER A 305 ? VAL A 320 SER A 324 D 5 THR A 334 ? ALA A 338 ? THR A 353 ALA A 357 D 6 THR A 367 ? PHE A 374 ? THR A 386 PHE A 393 D 7 VAL A 433 ? LEU A 436 ? VAL A 452 LEU A 455 E 1 ASP A 308 ? ASP A 309 ? ASP A 327 ASP A 328 E 2 THR A 358 ? PHE A 359 ? THR A 377 PHE A 378 F 1 TRP A 347 ? VAL A 349 ? TRP A 366 VAL A 368 F 2 ARG A 352 ? GLN A 354 ? ARG A 371 GLN A 373 G 1 GLY A 392 ? PRO A 398 ? GLY A 411 PRO A 417 G 2 GLY A 427 ? TYR A 430 ? GLY A 446 TYR A 449 H 1 TYR A 440 ? SER A 444 ? TYR A 459 SER A 463 H 2 VAL A 447 ? VAL A 452 ? VAL A 466 VAL A 471 I 1 LEU A 496 ? PHE A 497 ? LEU A 515 PHE A 516 I 2 THR A 531 ? PRO A 532 ? THR A 550 PRO A 551 J 1 CYS A 503 ? GLU A 505 ? CYS A 522 GLU A 524 J 2 GLN A 515 ? CYS A 518 ? GLN A 534 CYS A 537 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 19 ? N LEU A 38 O HIS A 121 ? O HIS A 140 A 2 3 N HIS A 120 ? N HIS A 139 O ARG A 133 ? O ARG A 152 B 1 2 N GLN A 90 ? N GLN A 109 O TRP A 104 ? O TRP A 123 B 2 3 O LEU A 105 ? O LEU A 124 N LEU A 28 ? N LEU A 47 B 3 4 N ALA A 33 ? N ALA A 52 O ASP A 149 ? O ASP A 168 C 1 2 N VAL A 242 ? N VAL A 261 O VAL A 272 ? O VAL A 291 C 2 3 O TRP A 271 ? O TRP A 290 N GLN A 206 ? N GLN A 225 C 3 4 N ALA A 207 ? N ALA A 226 O THR A 303 ? O THR A 322 C 4 5 N VAL A 304 ? N VAL A 323 O LEU A 336 ? O LEU A 355 C 5 6 N PHE A 337 ? N PHE A 356 O VAL A 369 ? O VAL A 388 C 6 7 N SER A 373 ? N SER A 392 O ILE A 384 ? O ILE A 403 D 1 2 N VAL A 242 ? N VAL A 261 O VAL A 272 ? O VAL A 291 D 2 3 O TRP A 271 ? O TRP A 290 N GLN A 206 ? N GLN A 225 D 3 4 N ALA A 207 ? N ALA A 226 O THR A 303 ? O THR A 322 D 4 5 N VAL A 304 ? N VAL A 323 O LEU A 336 ? O LEU A 355 D 5 6 N PHE A 337 ? N PHE A 356 O VAL A 369 ? O VAL A 388 D 6 7 N GLY A 370 ? N GLY A 389 O VAL A 433 ? O VAL A 452 E 1 2 N ASP A 308 ? N ASP A 327 O PHE A 359 ? O PHE A 378 F 1 2 N VAL A 349 ? N VAL A 368 O ARG A 352 ? O ARG A 371 G 1 2 N PHE A 397 ? N PHE A 416 O ARG A 428 ? O ARG A 447 H 1 2 N VAL A 442 ? N VAL A 461 O ILE A 449 ? O ILE A 468 I 1 2 N PHE A 497 ? N PHE A 516 O THR A 531 ? O THR A 550 J 1 2 N HIS A 504 ? N HIS A 523 O GLY A 516 ? O GLY A 535 # _pdbx_entry_details.entry_id 3EDY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 174 ? ? -142.74 -55.50 2 1 HIS A 197 ? ? -169.11 112.85 3 1 GLU A 232 ? ? -66.02 70.70 4 1 SER A 293 ? ? -167.01 89.95 5 1 SER A 294 ? ? -115.76 61.61 6 1 PRO A 295 ? ? -55.99 -178.84 7 1 HIS A 298 ? ? -151.58 78.95 8 1 ILE A 399 ? ? -93.99 32.80 9 1 THR A 400 ? ? -79.17 -150.65 10 1 VAL A 415 ? ? -122.57 -53.19 11 1 SER A 525 ? ? -155.04 -156.62 12 1 PRO A 544 ? ? -87.77 32.09 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 VAL A 190 ? ? THR A 191 ? ? 145.34 2 1 PHE A 397 ? ? LEU A 398 ? ? -146.56 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 191 A ASN 210 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 267 A ASN 286 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 294 A ASN 313 ? ASN 'GLYCOSYLATION SITE' 4 A ASN 424 A ASN 443 ? ASN 'GLYCOSYLATION SITE' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 66.2738 -13.0538 2.1520 0.1090 -0.0184 0.0690 0.0046 0.0230 0.0418 0.5650 0.4290 2.4410 0.1373 0.3702 0.3489 0.0294 -0.0523 0.0229 0.0164 -0.1074 -0.0371 0.0235 0.3268 -0.0087 'X-RAY DIFFRACTION' 2 ? refined 62.6178 31.8842 -3.9333 0.1573 0.0908 0.1681 -0.0775 -0.0203 0.0363 6.3336 6.8069 6.1013 -0.6618 0.4216 -6.4409 -0.0083 -0.3865 0.3947 -0.2337 0.5860 -0.3336 1.3167 -0.9541 0.6932 'X-RAY DIFFRACTION' 3 ? refined 78.2416 15.3592 5.4954 0.0480 0.0869 0.0993 -0.0017 0.0054 0.0342 1.4037 1.6964 1.5827 0.1583 -0.1315 -0.3295 0.0123 -0.0353 0.0230 0.0931 -0.0044 -0.1322 -0.0877 0.0029 0.1054 'X-RAY DIFFRACTION' 4 ? refined 63.3730 2.6706 8.3560 0.0762 0.0683 0.0576 0.0004 0.0202 0.0432 1.5278 1.1679 1.0363 -0.1039 0.1647 -0.0415 0.0340 -0.0643 0.0303 0.0259 0.0340 -0.0200 -0.0423 0.0100 -0.0206 'X-RAY DIFFRACTION' 5 ? refined 60.1360 12.7024 16.8630 0.0682 0.0989 0.0534 0.0086 0.0273 0.0171 0.8905 0.5261 0.3547 0.1013 0.0795 -0.0848 0.0297 -0.0316 0.0019 -0.1673 0.0512 0.0229 0.0851 -0.0269 -0.0671 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 183 ? 20 A 1 A 164 'X-RAY DIFFRACTION' ? 2 2 A A 197 ? 184 A 165 A 178 'X-RAY DIFFRACTION' ? 3 3 A A 292 ? 198 A 179 A 273 'X-RAY DIFFRACTION' ? 4 4 A A 401 ? 293 A 274 A 382 'X-RAY DIFFRACTION' ? 5 5 A A 563 ? 402 A 383 A 544 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 EDO C1 C N N 89 EDO O1 O N N 90 EDO C2 C N N 91 EDO O2 O N N 92 EDO H11 H N N 93 EDO H12 H N N 94 EDO HO1 H N N 95 EDO H21 H N N 96 EDO H22 H N N 97 EDO HO2 H N N 98 GLN N N N N 99 GLN CA C N S 100 GLN C C N N 101 GLN O O N N 102 GLN CB C N N 103 GLN CG C N N 104 GLN CD C N N 105 GLN OE1 O N N 106 GLN NE2 N N N 107 GLN OXT O N N 108 GLN H H N N 109 GLN H2 H N N 110 GLN HA H N N 111 GLN HB2 H N N 112 GLN HB3 H N N 113 GLN HG2 H N N 114 GLN HG3 H N N 115 GLN HE21 H N N 116 GLN HE22 H N N 117 GLN HXT H N N 118 GLU N N N N 119 GLU CA C N S 120 GLU C C N N 121 GLU O O N N 122 GLU CB C N N 123 GLU CG C N N 124 GLU CD C N N 125 GLU OE1 O N N 126 GLU OE2 O N N 127 GLU OXT O N N 128 GLU H H N N 129 GLU H2 H N N 130 GLU HA H N N 131 GLU HB2 H N N 132 GLU HB3 H N N 133 GLU HG2 H N N 134 GLU HG3 H N N 135 GLU HE2 H N N 136 GLU HXT H N N 137 GLY N N N N 138 GLY CA C N N 139 GLY C C N N 140 GLY O O N N 141 GLY OXT O N N 142 GLY H H N N 143 GLY H2 H N N 144 GLY HA2 H N N 145 GLY HA3 H N N 146 GLY HXT H N N 147 HIS N N N N 148 HIS CA C N S 149 HIS C C N N 150 HIS O O N N 151 HIS CB C N N 152 HIS CG C Y N 153 HIS ND1 N Y N 154 HIS CD2 C Y N 155 HIS CE1 C Y N 156 HIS NE2 N Y N 157 HIS OXT O N N 158 HIS H H N N 159 HIS H2 H N N 160 HIS HA H N N 161 HIS HB2 H N N 162 HIS HB3 H N N 163 HIS HD1 H N N 164 HIS HD2 H N N 165 HIS HE1 H N N 166 HIS HE2 H N N 167 HIS HXT H N N 168 HOH O O N N 169 HOH H1 H N N 170 HOH H2 H N N 171 ILE N N N N 172 ILE CA C N S 173 ILE C C N N 174 ILE O O N N 175 ILE CB C N S 176 ILE CG1 C N N 177 ILE CG2 C N N 178 ILE CD1 C N N 179 ILE OXT O N N 180 ILE H H N N 181 ILE H2 H N N 182 ILE HA H N N 183 ILE HB H N N 184 ILE HG12 H N N 185 ILE HG13 H N N 186 ILE HG21 H N N 187 ILE HG22 H N N 188 ILE HG23 H N N 189 ILE HD11 H N N 190 ILE HD12 H N N 191 ILE HD13 H N N 192 ILE HXT H N N 193 LEU N N N N 194 LEU CA C N S 195 LEU C C N N 196 LEU O O N N 197 LEU CB C N N 198 LEU CG C N N 199 LEU CD1 C N N 200 LEU CD2 C N N 201 LEU OXT O N N 202 LEU H H N N 203 LEU H2 H N N 204 LEU HA H N N 205 LEU HB2 H N N 206 LEU HB3 H N N 207 LEU HG H N N 208 LEU HD11 H N N 209 LEU HD12 H N N 210 LEU HD13 H N N 211 LEU HD21 H N N 212 LEU HD22 H N N 213 LEU HD23 H N N 214 LEU HXT H N N 215 LYS N N N N 216 LYS CA C N S 217 LYS C C N N 218 LYS O O N N 219 LYS CB C N N 220 LYS CG C N N 221 LYS CD C N N 222 LYS CE C N N 223 LYS NZ N N N 224 LYS OXT O N N 225 LYS H H N N 226 LYS H2 H N N 227 LYS HA H N N 228 LYS HB2 H N N 229 LYS HB3 H N N 230 LYS HG2 H N N 231 LYS HG3 H N N 232 LYS HD2 H N N 233 LYS HD3 H N N 234 LYS HE2 H N N 235 LYS HE3 H N N 236 LYS HZ1 H N N 237 LYS HZ2 H N N 238 LYS HZ3 H N N 239 LYS HXT H N N 240 MET N N N N 241 MET CA C N S 242 MET C C N N 243 MET O O N N 244 MET CB C N N 245 MET CG C N N 246 MET SD S N N 247 MET CE C N N 248 MET OXT O N N 249 MET H H N N 250 MET H2 H N N 251 MET HA H N N 252 MET HB2 H N N 253 MET HB3 H N N 254 MET HG2 H N N 255 MET HG3 H N N 256 MET HE1 H N N 257 MET HE2 H N N 258 MET HE3 H N N 259 MET HXT H N N 260 NAG C1 C N R 261 NAG C2 C N R 262 NAG C3 C N R 263 NAG C4 C N S 264 NAG C5 C N R 265 NAG C6 C N N 266 NAG C7 C N N 267 NAG C8 C N N 268 NAG N2 N N N 269 NAG O1 O N N 270 NAG O3 O N N 271 NAG O4 O N N 272 NAG O5 O N N 273 NAG O6 O N N 274 NAG O7 O N N 275 NAG H1 H N N 276 NAG H2 H N N 277 NAG H3 H N N 278 NAG H4 H N N 279 NAG H5 H N N 280 NAG H61 H N N 281 NAG H62 H N N 282 NAG H81 H N N 283 NAG H82 H N N 284 NAG H83 H N N 285 NAG HN2 H N N 286 NAG HO1 H N N 287 NAG HO3 H N N 288 NAG HO4 H N N 289 NAG HO6 H N N 290 PHE N N N N 291 PHE CA C N S 292 PHE C C N N 293 PHE O O N N 294 PHE CB C N N 295 PHE CG C Y N 296 PHE CD1 C Y N 297 PHE CD2 C Y N 298 PHE CE1 C Y N 299 PHE CE2 C Y N 300 PHE CZ C Y N 301 PHE OXT O N N 302 PHE H H N N 303 PHE H2 H N N 304 PHE HA H N N 305 PHE HB2 H N N 306 PHE HB3 H N N 307 PHE HD1 H N N 308 PHE HD2 H N N 309 PHE HE1 H N N 310 PHE HE2 H N N 311 PHE HZ H N N 312 PHE HXT H N N 313 PRO N N N N 314 PRO CA C N S 315 PRO C C N N 316 PRO O O N N 317 PRO CB C N N 318 PRO CG C N N 319 PRO CD C N N 320 PRO OXT O N N 321 PRO H H N N 322 PRO HA H N N 323 PRO HB2 H N N 324 PRO HB3 H N N 325 PRO HG2 H N N 326 PRO HG3 H N N 327 PRO HD2 H N N 328 PRO HD3 H N N 329 PRO HXT H N N 330 SER N N N N 331 SER CA C N S 332 SER C C N N 333 SER O O N N 334 SER CB C N N 335 SER OG O N N 336 SER OXT O N N 337 SER H H N N 338 SER H2 H N N 339 SER HA H N N 340 SER HB2 H N N 341 SER HB3 H N N 342 SER HG H N N 343 SER HXT H N N 344 THR N N N N 345 THR CA C N S 346 THR C C N N 347 THR O O N N 348 THR CB C N R 349 THR OG1 O N N 350 THR CG2 C N N 351 THR OXT O N N 352 THR H H N N 353 THR H2 H N N 354 THR HA H N N 355 THR HB H N N 356 THR HG1 H N N 357 THR HG21 H N N 358 THR HG22 H N N 359 THR HG23 H N N 360 THR HXT H N N 361 TRP N N N N 362 TRP CA C N S 363 TRP C C N N 364 TRP O O N N 365 TRP CB C N N 366 TRP CG C Y N 367 TRP CD1 C Y N 368 TRP CD2 C Y N 369 TRP NE1 N Y N 370 TRP CE2 C Y N 371 TRP CE3 C Y N 372 TRP CZ2 C Y N 373 TRP CZ3 C Y N 374 TRP CH2 C Y N 375 TRP OXT O N N 376 TRP H H N N 377 TRP H2 H N N 378 TRP HA H N N 379 TRP HB2 H N N 380 TRP HB3 H N N 381 TRP HD1 H N N 382 TRP HE1 H N N 383 TRP HE3 H N N 384 TRP HZ2 H N N 385 TRP HZ3 H N N 386 TRP HH2 H N N 387 TRP HXT H N N 388 TYR N N N N 389 TYR CA C N S 390 TYR C C N N 391 TYR O O N N 392 TYR CB C N N 393 TYR CG C Y N 394 TYR CD1 C Y N 395 TYR CD2 C Y N 396 TYR CE1 C Y N 397 TYR CE2 C Y N 398 TYR CZ C Y N 399 TYR OH O N N 400 TYR OXT O N N 401 TYR H H N N 402 TYR H2 H N N 403 TYR HA H N N 404 TYR HB2 H N N 405 TYR HB3 H N N 406 TYR HD1 H N N 407 TYR HD2 H N N 408 TYR HE1 H N N 409 TYR HE2 H N N 410 TYR HH H N N 411 TYR HXT H N N 412 VAL N N N N 413 VAL CA C N S 414 VAL C C N N 415 VAL O O N N 416 VAL CB C N N 417 VAL CG1 C N N 418 VAL CG2 C N N 419 VAL OXT O N N 420 VAL H H N N 421 VAL H2 H N N 422 VAL HA H N N 423 VAL HB H N N 424 VAL HG11 H N N 425 VAL HG12 H N N 426 VAL HG13 H N N 427 VAL HG21 H N N 428 VAL HG22 H N N 429 VAL HG23 H N N 430 VAL HXT H N N 431 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 NAG C1 C2 sing N N 246 NAG C1 O1 sing N N 247 NAG C1 O5 sing N N 248 NAG C1 H1 sing N N 249 NAG C2 C3 sing N N 250 NAG C2 N2 sing N N 251 NAG C2 H2 sing N N 252 NAG C3 C4 sing N N 253 NAG C3 O3 sing N N 254 NAG C3 H3 sing N N 255 NAG C4 C5 sing N N 256 NAG C4 O4 sing N N 257 NAG C4 H4 sing N N 258 NAG C5 C6 sing N N 259 NAG C5 O5 sing N N 260 NAG C5 H5 sing N N 261 NAG C6 O6 sing N N 262 NAG C6 H61 sing N N 263 NAG C6 H62 sing N N 264 NAG C7 C8 sing N N 265 NAG C7 N2 sing N N 266 NAG C7 O7 doub N N 267 NAG C8 H81 sing N N 268 NAG C8 H82 sing N N 269 NAG C8 H83 sing N N 270 NAG N2 HN2 sing N N 271 NAG O1 HO1 sing N N 272 NAG O3 HO3 sing N N 273 NAG O4 HO4 sing N N 274 NAG O6 HO6 sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # _atom_sites.entry_id 3EDY _atom_sites.fract_transf_matrix[1][1] 0.016720 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010733 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009758 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_