HEADER ISOMERASE 07-SEP-08 3EEZ TITLE CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE TITLE 2 LACTONIZING ENZYME FROM SILICIBACTER POMEROYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI; SOURCE 3 ORGANISM_TAXID: 89184; SOURCE 4 GENE: SPO1594; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,S.HU,S.OZYURT,S.WASSERMAN,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 7 30-AUG-23 3EEZ 1 REMARK REVDAT 6 20-OCT-21 3EEZ 1 SEQADV REVDAT 5 10-FEB-21 3EEZ 1 AUTHOR JRNL REVDAT 4 14-NOV-18 3EEZ 1 AUTHOR REVDAT 3 25-OCT-17 3EEZ 1 REMARK REVDAT 2 24-FEB-09 3EEZ 1 VERSN REVDAT 1 30-SEP-08 3EEZ 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,S.HU,S.OZYURT,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE JRNL TITL 2 LACTONIZING ENZYME FROM SILICIBACTER POMEROYI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 17478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 905 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1198 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.11000 REMARK 3 B22 (A**2) : -5.11000 REMARK 3 B33 (A**2) : 10.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.470 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.333 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.564 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2809 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3832 ; 1.574 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 365 ; 6.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;35.471 ;22.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;22.121 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.493 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2162 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1298 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1839 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 79 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1855 ; 0.705 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2896 ; 1.174 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1076 ; 1.474 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 935 ; 2.405 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17526 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.686 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.18100 REMARK 200 R SYM (I) : 0.18100 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : 0.56800 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2QDD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200MM LITHIUM NITRATE, REMARK 280 PH 7.0, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 84930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 ARG A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 VAL A 144 CG1 CG2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 156 CG CD OE1 NE2 REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 -29.04 -149.28 REMARK 500 PRO A 59 78.42 -63.84 REMARK 500 LEU A 77 151.35 -46.88 REMARK 500 LEU A 95 94.24 -161.35 REMARK 500 MET A 107 -70.82 -52.40 REMARK 500 SER A 137 -169.85 -71.05 REMARK 500 LYS A 142 154.49 178.88 REMARK 500 THR A 147 -71.38 -61.53 REMARK 500 ARG A 157 13.87 -67.00 REMARK 500 PRO A 220 55.37 -67.08 REMARK 500 PRO A 232 0.21 -69.61 REMARK 500 ASP A 241 -85.68 -121.42 REMARK 500 SER A 297 -157.45 -82.36 REMARK 500 VAL A 319 -169.09 -112.29 REMARK 500 ASN A 338 88.87 -60.26 REMARK 500 ASP A 340 71.42 50.70 REMARK 500 VAL A 353 118.40 179.30 REMARK 500 GLU A 357 0.23 -65.10 REMARK 500 SER A 368 -163.90 -121.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9394O RELATED DB: TARGETDB DBREF 3EEZ A 2 368 UNP Q5LT20 Q5LT20_SILPO 2 368 SEQADV 3EEZ MET A -1 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ SER A 0 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ LEU A 1 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ GLU A 185 UNP Q5LT20 LYS 185 ENGINEERED MUTATION SEQADV 3EEZ THR A 284 UNP Q5LT20 ALA 284 ENGINEERED MUTATION SEQADV 3EEZ GLU A 369 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ GLY A 370 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ HIS A 371 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ HIS A 372 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ HIS A 373 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ HIS A 374 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ HIS A 375 UNP Q5LT20 EXPRESSION TAG SEQADV 3EEZ HIS A 376 UNP Q5LT20 EXPRESSION TAG SEQRES 1 A 378 MET SER LEU LYS ILE THR ARG ILE THR VAL TYR GLN VAL SEQRES 2 A 378 ASP LEU PRO LEU GLU HIS PRO TYR TRP LEU SER GLY GLY SEQRES 3 A 378 ARG LEU LYS PHE GLU LEU LEU ASP ALA THR LEU VAL LYS SEQRES 4 A 378 LEU GLU THR ASP ALA GLY ILE THR GLY TRP GLY GLU GLY SEQRES 5 A 378 THR PRO TRP GLY HIS THR TYR VAL PRO ALA HIS GLY PRO SEQRES 6 A 378 GLY ILE ARG ALA GLY ILE GLU THR MET ALA PRO PHE VAL SEQRES 7 A 378 LEU GLY LEU ASP PRO ARG ARG LEU LEU ASP VAL GLU ARG SEQRES 8 A 378 ALA MET ASP ILE ALA LEU PRO GLY HIS LEU TYR ALA LYS SEQRES 9 A 378 SER PRO ILE ASP MET ALA CYS TRP ASP ILE ALA GLY GLN SEQRES 10 A 378 ALA ALA GLY LEU PRO ILE ALA ASP LEU MET GLY GLY GLY SEQRES 11 A 378 SER ARG THR PRO ARG PRO ILE ALA SER SER VAL GLY ALA SEQRES 12 A 378 LYS SER VAL GLU GLU THR ARG ALA VAL ILE ASP ARG TYR SEQRES 13 A 378 ARG GLN ARG GLY TYR VAL ALA HIS SER VAL LYS ILE GLY SEQRES 14 A 378 GLY ASP VAL GLU ARG ASP ILE ALA ARG ILE ARG ASP VAL SEQRES 15 A 378 GLU ASP ILE ARG GLU PRO GLY GLU ILE VAL LEU TYR ASP SEQRES 16 A 378 VAL ASN ARG GLY TRP THR ARG GLN GLN ALA LEU ARG VAL SEQRES 17 A 378 MET ARG ALA THR GLU ASP LEU HIS VAL MET PHE GLU GLN SEQRES 18 A 378 PRO GLY GLU THR LEU ASP ASP ILE ALA ALA ILE ARG PRO SEQRES 19 A 378 LEU HIS SER ALA PRO VAL SER VAL ASP GLU CYS LEU VAL SEQRES 20 A 378 THR LEU GLN ASP ALA ALA ARG VAL ALA ARG ASP GLY LEU SEQRES 21 A 378 ALA GLU VAL PHE GLY ILE LYS LEU ASN ARG VAL GLY GLY SEQRES 22 A 378 LEU THR ARG ALA ALA ARG MET ARG ASP ILE ALA LEU THR SEQRES 23 A 378 HIS GLY ILE ASP MET PHE VAL MET ALA THR GLY GLY SER SEQRES 24 A 378 VAL LEU ALA ASP ALA GLU ALA LEU HIS LEU ALA ALA THR SEQRES 25 A 378 ILE PRO ASP HIS ALA CYS HIS ALA VAL TRP ALA CYS GLN SEQRES 26 A 378 ASP MET LEU THR VAL ASP ILE ALA GLY GLY ARG GLY PRO SEQRES 27 A 378 ARG ASN ILE ASP GLY HIS LEU HIS LEU PRO GLU THR PRO SEQRES 28 A 378 GLY LEU GLY VAL HIS PRO ASP GLU ASP ALA LEU GLY ASP SEQRES 29 A 378 PRO VAL ALA VAL TYR SER GLU GLY HIS HIS HIS HIS HIS SEQRES 30 A 378 HIS FORMUL 2 HOH *4(H2 O) HELIX 1 1 HIS A 61 LEU A 77 1 17 HELIX 2 2 ARG A 83 LEU A 95 1 13 HELIX 3 3 HIS A 98 ALA A 117 1 20 HELIX 4 4 PRO A 120 MET A 125 1 6 HELIX 5 5 SER A 143 ARG A 157 1 15 HELIX 6 6 ASP A 169 GLU A 181 1 13 HELIX 7 7 THR A 199 THR A 210 1 12 HELIX 8 8 GLU A 211 HIS A 214 5 4 HELIX 9 9 THR A 223 ILE A 230 1 8 HELIX 10 10 ARG A 231 HIS A 234 5 4 HELIX 11 11 THR A 246 ASP A 256 1 11 HELIX 12 12 LEU A 266 GLY A 270 1 5 HELIX 13 13 GLY A 271 HIS A 285 1 15 HELIX 14 14 SER A 297 THR A 310 1 14 HELIX 15 15 ILE A 311 CYS A 316 5 6 HELIX 16 16 CYS A 322 LEU A 326 5 5 SHEET 1 A 4 GLY A 46 GLY A 50 0 SHEET 2 A 4 LEU A 30 THR A 40 -1 N VAL A 36 O GLY A 48 SHEET 3 A 4 ILE A 3 PRO A 14 -1 N THR A 4 O GLU A 39 SHEET 4 A 4 ALA A 365 TYR A 367 -1 O TYR A 367 N ILE A 6 SHEET 1 B 2 ARG A 133 PRO A 134 0 SHEET 2 B 2 HIS A 342 LEU A 343 -1 O LEU A 343 N ARG A 133 SHEET 1 C 6 ALA A 161 LYS A 165 0 SHEET 2 C 6 ILE A 189 ASP A 193 1 O ILE A 189 N HIS A 162 SHEET 3 C 6 PHE A 217 GLU A 218 1 O GLU A 218 N TYR A 192 SHEET 4 C 6 VAL A 238 VAL A 240 1 O SER A 239 N PHE A 217 SHEET 5 C 6 VAL A 261 LYS A 265 1 O VAL A 261 N VAL A 240 SHEET 6 C 6 ASP A 288 MET A 292 1 O ASP A 288 N PHE A 262 CRYST1 110.626 110.626 120.272 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008314 0.00000