HEADER ELECTRON TRANSPORT 08-SEP-08 3EF4 TITLE CRYSTAL STRUCTURE OF NATIVE PSEUDOAZURIN FROM HYPHOMICROBIUM TITLE 2 DENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLUE COPPER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PSEUDOAZURIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPHOMICROBIUM DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 53399 KEYWDS COPPER, ELECTRON TRANSFER, BLUE COPPER PROTEIN, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.HIRA,M.NOJIRI,S.SUZUKI REVDAT 3 01-NOV-23 3EF4 1 REMARK REVDAT 2 07-APR-09 3EF4 1 JRNL REVDAT 1 30-DEC-08 3EF4 0 JRNL AUTH D.HIRA,M.NOJIRI,S.SUZUKI JRNL TITL ATOMIC RESOLUTION STRUCTURE OF PSEUDOAZURIN FROM THE JRNL TITL 2 METHYLOTROPHIC DENITRIFYING BACTERIUM HYPHOMICROBIUM JRNL TITL 3 DENITRIFICANS: STRUCTURAL INSIGHTS INTO ITS SPECTROSCOPIC JRNL TITL 4 PROPERTIES JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 85 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19153470 JRNL DOI 10.1107/S0907444908040195 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.135 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.135 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6376 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 132934 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.122 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.122 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 5355 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 100866 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 500 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3402.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2724.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 30 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 32026 REMARK 3 NUMBER OF RESTRAINTS : 45026 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 ANGLE DISTANCES (A) : 0.033 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : DOUBLE SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132934 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 49.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REFMAC SHELX REMARK 200 STARTING MODEL: PDB ENTRY 1ADW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2M AMMONIUM PHOSPHATE, 0.05M REMARK 280 POTASSIUM PHOSPHATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.84500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.31150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.84500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.31150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 520 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 579 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 39 CE NZ REMARK 470 LYS A 58 NZ REMARK 470 LYS A 71 NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 113 NZ REMARK 470 LYS A 121 NZ REMARK 470 LYS B 10 CD CE NZ REMARK 470 LYS B 33 NZ REMARK 470 LYS B 39 CE NZ REMARK 470 LYS B 63 CD CE NZ REMARK 470 LYS B 71 NZ REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 112 CE NZ REMARK 470 LYS B 113 CE NZ REMARK 470 LYS B 121 NZ REMARK 470 LYS C 10 CD CE NZ REMARK 470 LYS C 58 CE NZ REMARK 470 LYS C 63 CE NZ REMARK 470 LYS C 95 CD CE NZ REMARK 470 LYS C 106 CG CD CE NZ REMARK 470 LYS C 121 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLU A 64 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 LYS A 95 CB - CG - CD ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 MET B 17 CG - SD - CE ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR B 105 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 114 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 8 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR C 105 CG - CD2 - CE2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 17 73.94 54.94 REMARK 500 SER A 40 31.35 80.54 REMARK 500 GLU A 70 -62.11 -135.95 REMARK 500 MET B 17 71.72 61.49 REMARK 500 GLU B 52 100.16 -14.36 REMARK 500 GLU B 70 -56.21 -133.07 REMARK 500 MET C 17 74.94 60.81 REMARK 500 SER C 40 34.08 75.83 REMARK 500 GLU C 70 -64.07 -129.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 ND1 REMARK 620 2 CYS A 79 SG 134.2 REMARK 620 3 HIS A 82 ND1 97.0 109.5 REMARK 620 4 MET A 87 SD 90.5 111.2 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 41 ND1 REMARK 620 2 CYS B 79 SG 135.6 REMARK 620 3 HIS B 82 ND1 95.9 109.6 REMARK 620 4 MET B 87 SD 90.0 110.5 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 41 ND1 REMARK 620 2 CYS C 79 SG 137.7 REMARK 620 3 HIS C 82 ND1 95.7 108.6 REMARK 620 4 MET C 87 SD 88.9 110.1 114.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 406 DBREF 3EF4 A 1 124 UNP A7VL37 A7VL37_9RHIZ 27 150 DBREF 3EF4 B 1 124 UNP A7VL37 A7VL37_9RHIZ 27 150 DBREF 3EF4 C 1 124 UNP A7VL37 A7VL37_9RHIZ 27 150 SEQRES 1 A 124 ALA GLU HIS ILE VAL GLU MET ARG ASN LYS ASP ASP ALA SEQRES 2 A 124 GLY ASN THR MET VAL PHE GLN PRO GLY PHE VAL LYS VAL SEQRES 3 A 124 GLU ALA GLY ASP THR VAL LYS PHE VAL PRO THR ASP LYS SEQRES 4 A 124 SER HIS ASN ALA GLU SER VAL ARG GLU VAL TRP PRO GLU SEQRES 5 A 124 GLY VAL ALA PRO VAL LYS GLY GLY PHE SER LYS GLU VAL SEQRES 6 A 124 VAL PHE ASN ALA GLU LYS GLU GLY LEU TYR VAL LEU LYS SEQRES 7 A 124 CYS ALA PRO HIS TYR GLY MET GLY MET VAL VAL LEU VAL SEQRES 8 A 124 GLN VAL GLY LYS PRO VAL ASN LEU ASP GLN ILE LYS GLU SEQRES 9 A 124 TYR LYS ALA THR GLY LEU ALA LYS LYS ARG LEU ASP GLY SEQRES 10 A 124 GLU ILE ALA LYS VAL VAL GLN SEQRES 1 B 124 ALA GLU HIS ILE VAL GLU MET ARG ASN LYS ASP ASP ALA SEQRES 2 B 124 GLY ASN THR MET VAL PHE GLN PRO GLY PHE VAL LYS VAL SEQRES 3 B 124 GLU ALA GLY ASP THR VAL LYS PHE VAL PRO THR ASP LYS SEQRES 4 B 124 SER HIS ASN ALA GLU SER VAL ARG GLU VAL TRP PRO GLU SEQRES 5 B 124 GLY VAL ALA PRO VAL LYS GLY GLY PHE SER LYS GLU VAL SEQRES 6 B 124 VAL PHE ASN ALA GLU LYS GLU GLY LEU TYR VAL LEU LYS SEQRES 7 B 124 CYS ALA PRO HIS TYR GLY MET GLY MET VAL VAL LEU VAL SEQRES 8 B 124 GLN VAL GLY LYS PRO VAL ASN LEU ASP GLN ILE LYS GLU SEQRES 9 B 124 TYR LYS ALA THR GLY LEU ALA LYS LYS ARG LEU ASP GLY SEQRES 10 B 124 GLU ILE ALA LYS VAL VAL GLN SEQRES 1 C 124 ALA GLU HIS ILE VAL GLU MET ARG ASN LYS ASP ASP ALA SEQRES 2 C 124 GLY ASN THR MET VAL PHE GLN PRO GLY PHE VAL LYS VAL SEQRES 3 C 124 GLU ALA GLY ASP THR VAL LYS PHE VAL PRO THR ASP LYS SEQRES 4 C 124 SER HIS ASN ALA GLU SER VAL ARG GLU VAL TRP PRO GLU SEQRES 5 C 124 GLY VAL ALA PRO VAL LYS GLY GLY PHE SER LYS GLU VAL SEQRES 6 C 124 VAL PHE ASN ALA GLU LYS GLU GLY LEU TYR VAL LEU LYS SEQRES 7 C 124 CYS ALA PRO HIS TYR GLY MET GLY MET VAL VAL LEU VAL SEQRES 8 C 124 GLN VAL GLY LYS PRO VAL ASN LEU ASP GLN ILE LYS GLU SEQRES 9 C 124 TYR LYS ALA THR GLY LEU ALA LYS LYS ARG LEU ASP GLY SEQRES 10 C 124 GLU ILE ALA LYS VAL VAL GLN HET CU A 401 1 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET PO4 A 405 5 HET CU B 401 1 HET PO4 B 402 5 HET PO4 B 403 5 HET PO4 B 404 5 HET PO4 B 405 5 HET PO4 B 406 5 HET PO4 B 407 5 HET CU C 401 1 HET PO4 C 402 5 HET PO4 C 403 10 HET PO4 C 404 5 HET PO4 C 405 5 HET PO4 C 406 5 HETNAM CU COPPER (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 4 CU 3(CU 2+) FORMUL 5 PO4 15(O4 P 3-) FORMUL 22 HOH *500(H2 O) HELIX 1 1 HIS A 82 GLY A 86 5 5 HELIX 2 2 ASN A 98 TYR A 105 1 8 HELIX 3 3 THR A 108 ALA A 120 1 13 HELIX 4 4 HIS B 82 GLY B 86 5 5 HELIX 5 5 ASN B 98 GLU B 104 1 7 HELIX 6 6 LEU B 110 ALA B 120 1 11 HELIX 7 7 HIS C 82 GLY C 86 5 5 HELIX 8 8 ASN C 98 TYR C 105 1 8 HELIX 9 9 LEU C 110 ALA C 120 1 11 SHEET 1 A 4 THR A 16 GLN A 20 0 SHEET 2 A 4 GLU A 2 LYS A 10 -1 N GLU A 6 O GLN A 20 SHEET 3 A 4 THR A 31 VAL A 35 1 O LYS A 33 N HIS A 3 SHEET 4 A 4 VAL A 65 ASN A 68 -1 O VAL A 65 N PHE A 34 SHEET 1 B 4 PHE A 23 VAL A 26 0 SHEET 2 B 4 VAL A 88 VAL A 93 1 O GLN A 92 N VAL A 26 SHEET 3 B 4 GLY A 73 LYS A 78 -1 N GLY A 73 O VAL A 93 SHEET 4 B 4 GLU A 44 SER A 45 -1 N GLU A 44 O LYS A 78 SHEET 1 C 4 THR B 16 GLN B 20 0 SHEET 2 C 4 GLU B 2 LYS B 10 -1 N GLU B 6 O GLN B 20 SHEET 3 C 4 THR B 31 VAL B 35 1 O LYS B 33 N HIS B 3 SHEET 4 C 4 VAL B 65 ASN B 68 -1 O PHE B 67 N VAL B 32 SHEET 1 D 4 PHE B 23 VAL B 26 0 SHEET 2 D 4 VAL B 88 VAL B 93 1 O GLN B 92 N VAL B 26 SHEET 3 D 4 GLY B 73 LYS B 78 -1 N GLY B 73 O VAL B 93 SHEET 4 D 4 GLU B 44 SER B 45 -1 N GLU B 44 O LYS B 78 SHEET 1 E 4 THR C 16 GLN C 20 0 SHEET 2 E 4 GLU C 2 LYS C 10 -1 N GLU C 6 O GLN C 20 SHEET 3 E 4 THR C 31 VAL C 35 1 O LYS C 33 N HIS C 3 SHEET 4 E 4 VAL C 65 ASN C 68 -1 O VAL C 65 N PHE C 34 SHEET 1 F 4 PHE C 23 VAL C 26 0 SHEET 2 F 4 VAL C 88 VAL C 93 1 O GLN C 92 N VAL C 26 SHEET 3 F 4 GLY C 73 LYS C 78 -1 N GLY C 73 O VAL C 93 SHEET 4 F 4 GLU C 44 SER C 45 -1 N GLU C 44 O LYS C 78 LINK ND1 HIS A 41 CU CU A 401 1555 1555 2.01 LINK SG CYS A 79 CU CU A 401 1555 1555 2.21 LINK ND1 HIS A 82 CU CU A 401 1555 1555 2.03 LINK SD MET A 87 CU CU A 401 1555 1555 2.51 LINK ND1 HIS B 41 CU CU B 401 1555 1555 2.01 LINK SG CYS B 79 CU CU B 401 1555 1555 2.20 LINK ND1 HIS B 82 CU CU B 401 1555 1555 2.03 LINK SD MET B 87 CU CU B 401 1555 1555 2.55 LINK ND1 HIS C 41 CU CU C 401 1555 1555 2.00 LINK SG CYS C 79 CU CU C 401 1555 1555 2.20 LINK ND1 HIS C 82 CU CU C 401 1555 1555 2.05 LINK SD MET C 87 CU CU C 401 1555 1555 2.58 CISPEP 1 GLN A 20 PRO A 21 0 -2.60 CISPEP 2 GLN B 20 PRO B 21 0 -2.75 CISPEP 3 GLN C 20 PRO C 21 0 -0.52 SITE 1 AC1 4 HIS A 41 CYS A 79 HIS A 82 MET A 87 SITE 1 AC2 7 HIS A 3 ILE A 4 PRO A 21 VAL A 24 SITE 2 AC2 7 HOH A 546 ARG B 47 GLU B 52 SITE 1 AC3 6 ALA A 1 HIS A 3 LYS A 25 VAL A 26 SITE 2 AC3 6 ASP A 30 HOH A 483 SITE 1 AC4 8 PRO A 51 GLU A 52 ASN A 98 HOH A 433 SITE 2 AC4 8 HOH A 475 HOH A 554 GLU C 6 ARG C 8 SITE 1 AC5 6 GLU A 44 LYS A 58 LYS A 78 HOH A 448 SITE 2 AC5 6 LYS C 39 PO4 C 403 SITE 1 AC6 4 HIS B 41 CYS B 79 HIS B 82 MET B 87 SITE 1 AC7 6 HIS B 3 ILE B 4 PRO B 21 HOH B 503 SITE 2 AC7 6 ARG C 47 GLU C 52 SITE 1 AC8 11 GLU A 6 ARG A 8 THR A 37 PRO B 51 SITE 2 AC8 11 GLU B 52 ASN B 98 GLN B 101 HOH B 497 SITE 3 AC8 11 HOH B 546 HOH B 556 HOH B 566 SITE 1 AC9 12 GLU A 2 LYS A 33 SER B 45 VAL B 46 SITE 2 AC9 12 ARG B 47 GLU B 48 LYS B 78 HOH B 443 SITE 3 AC9 12 HOH B 464 HOH B 465 HOH B 509 HOH B 553 SITE 1 BC1 8 GLU B 44 LYS B 58 LYS B 78 ALA B 80 SITE 2 BC1 8 HOH B 464 HOH B 465 HOH B 529 HOH B 567 SITE 1 BC2 7 ALA B 1 HIS B 3 LYS B 25 VAL B 26 SITE 2 BC2 7 ASP B 30 HOH B 481 HOH B 544 SITE 1 BC3 6 LYS B 25 GLU B 27 GLY B 94 LYS B 95 SITE 2 BC3 6 HOH B 562 HOH B 570 SITE 1 BC4 4 HIS C 41 CYS C 79 HIS C 82 MET C 87 SITE 1 BC5 5 LYS A 103 VAL C 66 ASN C 68 HOH C 431 SITE 2 BC5 5 HOH C 450 SITE 1 BC6 10 SER A 45 ARG A 47 GLU A 48 LYS A 78 SITE 2 BC6 10 PO4 A 405 HOH A 415 GLU C 2 LYS C 33 SITE 3 BC6 10 LYS C 39 HOH C 567 SITE 1 BC7 8 HIS C 3 ILE C 4 PRO C 21 VAL C 24 SITE 2 BC7 8 HOH C 477 HOH C 478 HOH C 533 HOH C 581 SITE 1 BC8 4 HOH A 458 HOH A 479 GLU C 44 LYS C 78 SITE 1 BC9 8 GLU B 2 SER C 45 ARG C 47 GLU C 48 SITE 2 BC9 8 LYS C 78 HOH C 469 HOH C 473 HOH C 569 CRYST1 97.690 50.623 82.378 90.00 90.98 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010236 0.000000 0.000175 0.00000 SCALE2 0.000000 0.019754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012141 0.00000