HEADER HYDROLASE 08-SEP-08 3EF5 TITLE STRUCTURE OF THE RNA PYROPHOSPHOHYDROLASE BDRPPH IN COMPLEX WITH DGTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS; SOURCE 3 ORGANISM_TAXID: 959; SOURCE 4 STRAIN: HD100; SOURCE 5 GENE: MUTT, BD0714; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS NUDIX, RNA PYROPHOSPHOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MESSING,S.B.GABELLI,L.M.AMZEL REVDAT 4 21-FEB-24 3EF5 1 REMARK REVDAT 3 25-OCT-17 3EF5 1 REMARK REVDAT 2 13-JUL-11 3EF5 1 VERSN REVDAT 1 24-MAR-09 3EF5 0 JRNL AUTH S.A.MESSING,S.B.GABELLI,Q.LIU,H.CELESNIK,J.G.BELASCO, JRNL AUTH 2 S.A.PINEIRO,L.M.AMZEL JRNL TITL STRUCTURE AND BIOLOGICAL FUNCTION OF THE RNA JRNL TITL 2 PYROPHOSPHOHYDROLASE BDRPPH FROM BDELLOVIBRIO BACTERIOVORUS. JRNL REF STRUCTURE V. 17 472 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19278661 JRNL DOI 10.1016/J.STR.2008.12.022 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 13703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 844 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2131 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.15000 REMARK 3 B22 (A**2) : 2.57000 REMARK 3 B33 (A**2) : -4.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.473 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2256 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3062 ; 1.246 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 6.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;35.206 ;24.019 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;18.398 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.665 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1691 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 882 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1420 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 78 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.133 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1338 ; 0.439 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2061 ; 0.747 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 1.092 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1001 ; 1.796 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 21 REMARK 3 RESIDUE RANGE : A 40 A 49 REMARK 3 RESIDUE RANGE : A 90 A 96 REMARK 3 RESIDUE RANGE : A 112 A 118 REMARK 3 RESIDUE RANGE : A 148 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8200 -14.1664 -11.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.5016 T22: 0.6665 REMARK 3 T33: 0.5038 T12: -0.1918 REMARK 3 T13: -0.0723 T23: 0.1174 REMARK 3 L TENSOR REMARK 3 L11: 6.9922 L22: 15.0928 REMARK 3 L33: 3.2220 L12: -0.7383 REMARK 3 L13: 2.7487 L23: 5.3802 REMARK 3 S TENSOR REMARK 3 S11: 0.5028 S12: -0.3728 S13: 0.8298 REMARK 3 S21: -0.0226 S22: -0.7551 S23: -1.6284 REMARK 3 S31: -0.0269 S32: 0.9342 S33: 0.2524 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 39 REMARK 3 RESIDUE RANGE : A 50 A 89 REMARK 3 RESIDUE RANGE : A 97 A 111 REMARK 3 RESIDUE RANGE : A 119 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0015 -17.9579 -15.2407 REMARK 3 T TENSOR REMARK 3 T11: -0.1574 T22: -0.0441 REMARK 3 T33: -0.1798 T12: -0.1016 REMARK 3 T13: 0.0238 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 4.7721 L22: 5.8748 REMARK 3 L33: 4.9248 L12: -2.2064 REMARK 3 L13: 1.6515 L23: -0.5362 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: -0.0967 S13: 0.0368 REMARK 3 S21: 0.0336 S22: 0.0157 S23: -0.2056 REMARK 3 S31: 0.1705 S32: 0.3587 S33: -0.1287 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 21 REMARK 3 RESIDUE RANGE : B 40 B 42 REMARK 3 RESIDUE RANGE : B 47 B 49 REMARK 3 RESIDUE RANGE : B 90 B 96 REMARK 3 RESIDUE RANGE : B 112 B 118 REMARK 3 RESIDUE RANGE : B 148 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9428 6.7909 -12.2755 REMARK 3 T TENSOR REMARK 3 T11: 0.4532 T22: 0.3902 REMARK 3 T33: 0.2182 T12: -0.2208 REMARK 3 T13: -0.2619 T23: 0.1532 REMARK 3 L TENSOR REMARK 3 L11: 10.8664 L22: 9.6520 REMARK 3 L33: 3.5230 L12: -0.4812 REMARK 3 L13: -4.7346 L23: -3.5402 REMARK 3 S TENSOR REMARK 3 S11: -0.7745 S12: 0.3578 S13: 1.3372 REMARK 3 S21: -0.6696 S22: 0.5348 S23: -0.2022 REMARK 3 S31: -1.0054 S32: -0.0753 S33: 0.2397 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 39 REMARK 3 RESIDUE RANGE : B 50 B 89 REMARK 3 RESIDUE RANGE : B 97 B 111 REMARK 3 RESIDUE RANGE : B 119 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8379 -0.1123 -7.9333 REMARK 3 T TENSOR REMARK 3 T11: -0.0288 T22: -0.1694 REMARK 3 T33: -0.1790 T12: -0.1033 REMARK 3 T13: -0.0301 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 6.1113 L22: 4.9998 REMARK 3 L33: 4.6317 L12: -2.2370 REMARK 3 L13: 0.0081 L23: -1.8522 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: 0.0172 S13: 0.1501 REMARK 3 S21: -0.1255 S22: 0.1111 S23: -0.0315 REMARK 3 S31: -0.4139 S32: -0.1694 S33: -0.1312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.2670 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NA ACETATE, PH 7, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.22300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.22400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.22300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.22400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: GEL FILTRATION WAS USED TO DETERMINE THE BIOLOGICAL REMARK 300 ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 GLN A 11 REMARK 465 LYS A 12 REMARK 465 LYS A 13 REMARK 465 SER A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 152 REMARK 465 LYS A 153 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 GLU B 8 REMARK 465 SER B 9 REMARK 465 LYS B 10 REMARK 465 GLN B 11 REMARK 465 LYS B 12 REMARK 465 LYS B 13 REMARK 465 SER B 14 REMARK 465 LYS B 15 REMARK 465 ILE B 16 REMARK 465 ARG B 17 REMARK 465 LYS B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 43 REMARK 465 ASN B 44 REMARK 465 SER B 45 REMARK 465 LEU B 46 REMARK 465 LYS B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 42 87.40 -62.97 REMARK 500 ASN A 44 15.73 -64.96 REMARK 500 MET A 118 146.23 -172.21 REMARK 500 TYR B 92 73.64 -117.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A3800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B3801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EEU RELATED DB: PDB REMARK 900 RELATED ID: 3EES RELATED DB: PDB DBREF 3EF5 A 1 153 UNP Q6MPX4 Q6MPX4_BDEBA 1 153 DBREF 3EF5 B 1 153 UNP Q6MPX4 Q6MPX4_BDEBA 1 153 SEQRES 1 A 153 MET THR ASP ASP SER ALA VAL GLU SER LYS GLN LYS LYS SEQRES 2 A 153 SER LYS ILE ARG LYS GLY HIS TRP ILE PRO VAL VAL ALA SEQRES 3 A 153 GLY PHE LEU ARG LYS ASP GLY LYS ILE LEU VAL GLY GLN SEQRES 4 A 153 ARG PRO GLU ASN ASN SER LEU ALA GLY GLN TRP GLU PHE SEQRES 5 A 153 PRO GLY GLY LYS ILE GLU ASN GLY GLU THR PRO GLU GLU SEQRES 6 A 153 ALA LEU ALA ARG GLU LEU ASN GLU GLU LEU GLY ILE GLU SEQRES 7 A 153 ALA GLU VAL GLY GLU LEU LYS LEU ALA CYS THR HIS SER SEQRES 8 A 153 TYR GLY ASP VAL GLY ILE LEU ILE LEU PHE TYR GLU ILE SEQRES 9 A 153 LEU TYR TRP LYS GLY GLU PRO ARG ALA LYS HIS HIS MET SEQRES 10 A 153 MET LEU GLU TRP ILE HIS PRO GLU GLU LEU LYS HIS ARG SEQRES 11 A 153 ASN ILE PRO GLU ALA ASN ARG LYS ILE LEU HIS LYS ILE SEQRES 12 A 153 TYR LYS ALA LEU GLY LEU GLU TRP ARG LYS SEQRES 1 B 153 MET THR ASP ASP SER ALA VAL GLU SER LYS GLN LYS LYS SEQRES 2 B 153 SER LYS ILE ARG LYS GLY HIS TRP ILE PRO VAL VAL ALA SEQRES 3 B 153 GLY PHE LEU ARG LYS ASP GLY LYS ILE LEU VAL GLY GLN SEQRES 4 B 153 ARG PRO GLU ASN ASN SER LEU ALA GLY GLN TRP GLU PHE SEQRES 5 B 153 PRO GLY GLY LYS ILE GLU ASN GLY GLU THR PRO GLU GLU SEQRES 6 B 153 ALA LEU ALA ARG GLU LEU ASN GLU GLU LEU GLY ILE GLU SEQRES 7 B 153 ALA GLU VAL GLY GLU LEU LYS LEU ALA CYS THR HIS SER SEQRES 8 B 153 TYR GLY ASP VAL GLY ILE LEU ILE LEU PHE TYR GLU ILE SEQRES 9 B 153 LEU TYR TRP LYS GLY GLU PRO ARG ALA LYS HIS HIS MET SEQRES 10 B 153 MET LEU GLU TRP ILE HIS PRO GLU GLU LEU LYS HIS ARG SEQRES 11 B 153 ASN ILE PRO GLU ALA ASN ARG LYS ILE LEU HIS LYS ILE SEQRES 12 B 153 TYR LYS ALA LEU GLY LEU GLU TRP ARG LYS HET DGT A3800 31 HET DGT B3801 31 HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE FORMUL 3 DGT 2(C10 H16 N5 O13 P3) FORMUL 5 HOH *44(H2 O) HELIX 1 1 THR A 62 GLY A 76 1 15 HELIX 2 2 HIS A 123 ARG A 130 5 8 HELIX 3 3 PRO A 133 LYS A 138 1 6 HELIX 4 4 ILE A 139 LEU A 147 1 9 HELIX 5 5 THR B 62 GLY B 76 1 15 HELIX 6 6 HIS B 123 ARG B 130 5 8 HELIX 7 7 PRO B 133 LYS B 138 1 6 HELIX 8 8 ILE B 139 LEU B 147 1 9 SHEET 1 A 4 GLY A 54 LYS A 56 0 SHEET 2 A 4 TRP A 21 PHE A 28 -1 N VAL A 25 O GLY A 55 SHEET 3 A 4 GLY A 96 GLU A 103 1 O LEU A 98 N VAL A 24 SHEET 4 A 4 LEU A 84 SER A 91 -1 N LYS A 85 O PHE A 101 SHEET 1 B 3 ARG A 30 LYS A 31 0 SHEET 2 B 3 LYS A 34 GLN A 39 -1 O LYS A 34 N LYS A 31 SHEET 3 B 3 TRP A 50 GLU A 51 -1 O GLU A 51 N GLY A 38 SHEET 1 C 3 ARG A 30 LYS A 31 0 SHEET 2 C 3 LYS A 34 GLN A 39 -1 O LYS A 34 N LYS A 31 SHEET 3 C 3 LEU A 119 ILE A 122 -1 O ILE A 122 N ILE A 35 SHEET 1 D 2 GLU A 78 GLU A 80 0 SHEET 2 D 2 TYR A 106 LYS A 108 -1 O TYR A 106 N GLU A 80 SHEET 1 E 4 GLY B 54 LYS B 56 0 SHEET 2 E 4 TRP B 21 PHE B 28 -1 N VAL B 25 O GLY B 55 SHEET 3 E 4 VAL B 95 GLU B 103 1 O LEU B 98 N VAL B 24 SHEET 4 E 4 LEU B 84 TYR B 92 -1 N LYS B 85 O PHE B 101 SHEET 1 F 3 ARG B 30 LYS B 31 0 SHEET 2 F 3 LYS B 34 GLN B 39 -1 O LYS B 34 N LYS B 31 SHEET 3 F 3 TRP B 50 GLU B 51 -1 O GLU B 51 N GLY B 38 SHEET 1 G 3 ARG B 30 LYS B 31 0 SHEET 2 G 3 LYS B 34 GLN B 39 -1 O LYS B 34 N LYS B 31 SHEET 3 G 3 MET B 118 ILE B 122 -1 O MET B 118 N GLN B 39 SHEET 1 H 2 GLU B 78 GLU B 80 0 SHEET 2 H 2 TYR B 106 LYS B 108 -1 O TYR B 106 N GLU B 80 SITE 1 AC1 12 VAL A 24 ARG A 40 PHE A 52 GLY A 54 SITE 2 AC1 12 GLY A 55 LYS A 56 ILE A 97 ILE A 99 SITE 3 AC1 12 PRO A 133 ASN A 136 HOH A3818 HOH A3819 SITE 1 AC2 12 VAL B 24 ARG B 40 GLU B 51 PHE B 52 SITE 2 AC2 12 GLY B 54 GLY B 55 LYS B 56 ILE B 97 SITE 3 AC2 12 ILE B 99 PRO B 133 ASN B 136 HOH B 176 CRYST1 68.446 68.448 92.740 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014610 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010783 0.00000