HEADER MEMBRANE PROTEIN 09-SEP-08 3EFM TITLE STRUCTURE OF THE ALCALIGIN OUTER MEMBRANE RECEPTEUR FAUA FROM TITLE 2 BORDETELLA PERTUSSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRIC ALCALIGIN SIDEROPHORE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 36-734; COMPND 5 SYNONYM: FAUA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 GENE: FAUA, BP2463; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, MEMBRANE RECEPTOR, MEMBRANE TRANSPORTER, KEYWDS 2 SIDEROPHORE, MEMBRANE, RECEPTOR, TONB BOX EXPDTA X-RAY DIFFRACTION AUTHOR K.BRILLET,E.LAUBER,C.REIMMANN,S.K.ARMSTRONG,D.COBESSI REVDAT 4 01-NOV-23 3EFM 1 REMARK SEQADV REVDAT 3 27-JUN-12 3EFM 1 JRNL REVDAT 2 13-JUL-11 3EFM 1 VERSN REVDAT 1 31-MAR-09 3EFM 0 JRNL AUTH K.BRILLET,A.MEKSEM,E.LAUBER,C.REIMMANN,D.COBESSI JRNL TITL USE OF AN IN-HOUSE APPROACH TO STUDY THE THREE-DIMENSIONAL JRNL TITL 2 STRUCTURES OF VARIOUS OUTER MEMBRANE PROTEINS: STRUCTURE OF JRNL TITL 3 THE ALCALIGIN OUTER MEMBRANE TRANSPORTER FAUA FROM JRNL TITL 4 BORDETELLA PERTUSSIS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 326 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19307713 JRNL DOI 10.1107/S0907444909002200 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2141 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2897 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : -2.96000 REMARK 3 B33 (A**2) : 1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4482 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6095 ; 1.565 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 565 ; 7.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;38.776 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 669 ;16.054 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.000 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3476 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1716 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2952 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 261 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2912 ; 0.910 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4509 ; 1.539 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1813 ; 2.249 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1586 ; 3.498 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6427 27.6082 1.0831 REMARK 3 T TENSOR REMARK 3 T11: -0.0609 T22: -0.0546 REMARK 3 T33: -0.0679 T12: -0.0243 REMARK 3 T13: -0.0066 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.4525 L22: 3.6808 REMARK 3 L33: 1.8403 L12: -0.3711 REMARK 3 L13: 0.2198 L23: 0.1718 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.0053 S13: -0.1457 REMARK 3 S21: 0.0349 S22: -0.0018 S23: 0.2165 REMARK 3 S31: 0.1147 S32: -0.2038 S33: -0.0267 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 652 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3340 29.2175 -0.8267 REMARK 3 T TENSOR REMARK 3 T11: -0.1187 T22: -0.0650 REMARK 3 T33: -0.0873 T12: -0.0261 REMARK 3 T13: 0.0173 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5408 L22: 1.2393 REMARK 3 L33: 1.0045 L12: 0.1404 REMARK 3 L13: 0.2129 L23: 0.0614 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: -0.0466 S13: -0.0167 REMARK 3 S21: 0.0411 S22: -0.0442 S23: 0.1386 REMARK 3 S31: 0.0282 S32: -0.1678 S33: 0.0310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : FLAT PANEL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 29.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.72400 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2O5P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75% C8E4, 0.1M HEPES, PH7.5, 0.3 REMARK 280 -0.5M NH4SO4, 13-17% MPD, PROTEIN CONCENTRATION 10MG/ML, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.21850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.21850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 82.94650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 94.42350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 82.94650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 94.42350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.21850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 82.94650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 94.42350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.21850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 82.94650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 94.42350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 ASP A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 GLN A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 VAL A 17 REMARK 465 THR A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 SER A 204 REMARK 465 TYR A 205 REMARK 465 VAL A 206 REMARK 465 HIS A 207 REMARK 465 PHE A 208 REMARK 465 PHE A 243A REMARK 465 GLY A 243B REMARK 465 SER A 243C REMARK 465 GLY A 243D REMARK 465 PHE A 243E REMARK 465 PRO A 243F REMARK 465 LEU A 243G REMARK 465 PHE A 243H REMARK 465 TYR A 243I REMARK 465 SER A 243J REMARK 465 ASP A 243K REMARK 465 GLY A 243L REMARK 465 SER A 243M REMARK 465 ARG A 243N REMARK 465 THR A 243O REMARK 465 ASP A 243P REMARK 465 PHE A 243Q REMARK 465 ASN A 243R REMARK 465 ARG A 243S REMARK 465 SER A 243T REMARK 465 VAL A 243U REMARK 465 ALA A 243V REMARK 465 ASN A 243W REMARK 465 ASN A 243X REMARK 465 ALA A 243Y REMARK 465 TYR A 298A REMARK 465 ARG A 298B REMARK 465 GLY A 298C REMARK 465 GLY A 298D REMARK 465 TYR A 298E REMARK 465 PRO A 298F REMARK 465 ASP A 298G REMARK 465 ARG A 298H REMARK 465 HIS A 298I REMARK 465 THR A 298J REMARK 465 GLY A 298K REMARK 465 ILE A 298L REMARK 465 ILE A 298M REMARK 465 ALA A 298N REMARK 465 ALA A 298O REMARK 465 PRO A 298P REMARK 465 PRO A 298Q REMARK 465 ALA A 298R REMARK 465 VAL A 348A REMARK 465 GLY A 348B REMARK 465 PRO A 348C REMARK 465 ALA A 348D REMARK 465 PRO A 348E REMARK 465 ALA A 348F REMARK 465 ILE A 348G REMARK 465 GLY A 348H REMARK 465 SER A 348I REMARK 465 PHE A 348J REMARK 465 PHE A 348K REMARK 465 ASP A 348L REMARK 465 TRP A 348M REMARK 465 ARG A 348N REMARK 465 ARG A 348O REMARK 465 ALA A 348P REMARK 465 GLY A 348Q REMARK 465 SER A 348R REMARK 465 HIS A 348S REMARK 465 HIS A 348T REMARK 465 HIS A 348U REMARK 465 HIS A 348V REMARK 465 HIS A 348W REMARK 465 HIS A 348X REMARK 465 HIS A 348Y REMARK 465 ILE A 348Z REMARK 465 GLN A 349A REMARK 465 GLU A 349B REMARK 465 PRO A 349C REMARK 465 SER A 349D REMARK 465 TRP A 349E REMARK 465 ALA A 349F REMARK 465 ASP A 349G REMARK 465 TYR A 588A REMARK 465 GLN A 588B REMARK 465 ALA A 588C REMARK 465 ALA A 588D REMARK 465 ALA A 588E REMARK 465 SER A 588F REMARK 465 PRO A 588G REMARK 465 ARG A 588H REMARK 465 GLY A 588I REMARK 465 ASN A 588J REMARK 465 VAL A 588K REMARK 465 GLU A 588L REMARK 465 VAL A 588M REMARK 465 GLU A 588N REMARK 465 PHE A 622 REMARK 465 ASP A 623 REMARK 465 LYS A 624 REMARK 465 LYS A 625 REMARK 465 TYR A 626 REMARK 465 TYR A 627 REMARK 465 ASP A 628 REMARK 465 GLN A 629 REMARK 465 ILE A 630 REMARK 465 GLY A 631 REMARK 465 PHE A 632 REMARK 465 TYR A 633 REMARK 465 SER A 634 REMARK 465 GLN A 635 REMARK 465 GLY A 636 REMARK 465 TRP A 637 REMARK 465 TRP A 638 REMARK 465 GLY A 639 REMARK 465 ALA A 640 REMARK 465 PRO A 641 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 ILE A 22 CG1 CG2 CD1 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 SER A 85 OG REMARK 470 ASP A 86 CG OD1 OD2 REMARK 470 SER A 87 OG REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 PRO A 257 CG CD REMARK 470 TRP A 258 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 258 CZ3 CH2 REMARK 470 VAL A 298 CG1 CG2 REMARK 470 PHE A 301 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 302 OG REMARK 470 TYR A 346 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 348 CG SD CE REMARK 470 LEU A 365 CG CD1 CD2 REMARK 470 PRO A 497 CG CD REMARK 470 SER A 499 OG REMARK 470 SER A 500 OG REMARK 470 ILE A 501 CG1 CG2 CD1 REMARK 470 PRO A 502 CG CD REMARK 470 PHE A 504 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 505 CG CD REMARK 470 ASN A 506 CG OD1 ND2 REMARK 470 MET A 507 CG SD CE REMARK 470 GLN A 508 CG CD OE1 NE2 REMARK 470 ARG A 587 CG CD NE CZ NH1 NH2 REMARK 470 MET A 588 CG SD CE REMARK 470 LEU A 621 CG CD1 CD2 REMARK 470 ARG A 642 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 55 NH2 ARG A 134 2.12 REMARK 500 OG SER A 481 O HOH A 763 2.18 REMARK 500 OD1 ASP A 178 O HOH A 771 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 154 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 PRO A 505 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 LEU A 560 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 100.21 74.47 REMARK 500 SER A 85 -49.88 45.72 REMARK 500 SER A 87 -61.46 -143.20 REMARK 500 ASN A 88 141.24 163.21 REMARK 500 ARG A 89 -3.50 82.49 REMARK 500 TYR A 90 -72.03 -38.08 REMARK 500 SER A 113 -118.71 56.83 REMARK 500 PRO A 146 49.68 -80.07 REMARK 500 SER A 147 -78.51 -99.08 REMARK 500 ALA A 259 -99.44 -72.55 REMARK 500 ARG A 260 105.57 91.56 REMARK 500 ARG A 411 98.96 -161.46 REMARK 500 ASN A 431 -157.20 -153.39 REMARK 500 ASP A 451 173.21 -47.76 REMARK 500 PRO A 458 151.27 -49.58 REMARK 500 PRO A 497 -121.02 19.83 REMARK 500 ILE A 501 45.38 -155.65 REMARK 500 PRO A 505 132.29 -176.21 REMARK 500 ASN A 506 -117.71 85.00 REMARK 500 GLN A 508 140.86 83.45 REMARK 500 ASP A 532 -1.19 75.11 REMARK 500 ASP A 595 -169.78 -128.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 653 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 654 DBREF 3EFM A 1 652 UNP Q9X6A5 Q9X6A5_BORPE 36 734 SEQADV 3EFM GLY A 348Q UNP Q9X6A5 EXPRESSION TAG SEQADV 3EFM SER A 348R UNP Q9X6A5 EXPRESSION TAG SEQADV 3EFM HIS A 348S UNP Q9X6A5 EXPRESSION TAG SEQADV 3EFM HIS A 348T UNP Q9X6A5 EXPRESSION TAG SEQADV 3EFM HIS A 348U UNP Q9X6A5 EXPRESSION TAG SEQADV 3EFM HIS A 348V UNP Q9X6A5 EXPRESSION TAG SEQADV 3EFM HIS A 348W UNP Q9X6A5 EXPRESSION TAG SEQADV 3EFM HIS A 348X UNP Q9X6A5 EXPRESSION TAG SEQRES 1 A 707 GLN GLU ALA ARG THR GLY ASN ASP ILE ALA GLN LEU PRO SEQRES 2 A 707 ALA ILE SER VAL THR GLY ARG GLU ILE SER ASP LEU THR SEQRES 3 A 707 GLU GLY THR ASN ALA TYR THR THR GLU ALA MET SER THR SEQRES 4 A 707 ALA THR GLY LEU THR LEU SER PRO ARG GLU THR PRO GLN SEQRES 5 A 707 SER VAL SER VAL VAL THR ARG GLN GLN ILE GLU ASP GLN SEQRES 6 A 707 GLY LEU THR ASP THR GLY ALA ILE LEU ALA THR ALA PRO SEQRES 7 A 707 GLY ILE SER VAL THR ARG SER ASP SER ASN ARG TYR SER SEQRES 8 A 707 PHE SER ALA ARG GLY PHE THR ILE ASP ASN PHE GLN PHE SEQRES 9 A 707 ASP GLY LEU VAL SER PRO ILE LEU SER GLN TRP ASN TYR SEQRES 10 A 707 GLY SER THR ASP MET ASP ALA ALA ILE TYR ASP HIS VAL SEQRES 11 A 707 GLU ILE VAL ARG GLY ALA THR GLY LEU MET THR GLY SER SEQRES 12 A 707 GLY ASN PRO SER ALA ALA VAL ASN PHE VAL ARG LYS ARG SEQRES 13 A 707 PRO LEU ARG GLU PHE ALA ALA THR PHE ASN ALA SER VAL SEQRES 14 A 707 GLY SER TRP ASP TYR VAL ARG GLY ASP ALA ASP ILE SER SEQRES 15 A 707 VAL PRO ILE THR GLU ASP GLY ARG ILE ARG SER ARG LEU SEQRES 16 A 707 VAL ALA ALA TYR SER GLN GLY ASP SER TYR VAL HIS PHE SEQRES 17 A 707 LEU ASP THR ARG ARG ARG THR PHE TYR GLY VAL VAL SER SEQRES 18 A 707 ALA ASP LEU THR PRO ASP THR VAL LEU THR THR SER VAL SEQRES 19 A 707 GLU TYR GLN HIS ASN HIS SER ASN GLY PHE GLY SER GLY SEQRES 20 A 707 PHE PRO LEU PHE TYR SER ASP GLY SER ARG THR ASP PHE SEQRES 21 A 707 ASN ARG SER VAL ALA ASN ASN ALA PRO TRP ALA ARG GLN SEQRES 22 A 707 ASP THR GLU ALA THR THR TYR PHE VAL ASP LEU THR HIS SEQRES 23 A 707 ARG PHE THR ASN ASP TRP LYS LEU ARG ALA ALA TYR SER SEQRES 24 A 707 HIS THR ASP GLY ARG TYR LEU MET LYS HIS VAL TYR ARG SEQRES 25 A 707 GLY GLY TYR PRO ASP ARG HIS THR GLY ILE ILE ALA ALA SEQRES 26 A 707 PRO PRO ALA PHE SER ASN TYR ASP GLY ASN LEU ASP ARG SEQRES 27 A 707 ASP ASP ILE HIS PHE SER LEU SER ALA PRO PHE GLU ALA SEQRES 28 A 707 PHE GLY LEU ARG HIS GLU VAL ALA LEU GLY TRP MET SER SEQRES 29 A 707 ILE ASP ASN HIS SER ASP ILE GLN ARG TYR ALA MET VAL SEQRES 30 A 707 GLY PRO ALA PRO ALA ILE GLY SER PHE PHE ASP TRP ARG SEQRES 31 A 707 ARG ALA GLY SER HIS HIS HIS HIS HIS HIS HIS ILE GLN SEQRES 32 A 707 GLU PRO SER TRP ALA ASP THR LEU SER PRO ALA ASP ASP SEQRES 33 A 707 VAL ARG THR LYS GLN THR GLY ALA TYR LEU VAL GLY ARG SEQRES 34 A 707 PHE ALA LEU ALA GLU PRO LEU HIS LEU ILE VAL GLY ASP SEQRES 35 A 707 ARG TRP SER ASP TRP LYS THR LYS GLN MET TYR PHE GLY SEQRES 36 A 707 SER ARG ARG GLU TYR ARG ILE LYS ASN GLN PHE THR PRO SEQRES 37 A 707 TYR ALA GLY LEU THR TYR ASP ILE ASN ASP THR TYR THR SEQRES 38 A 707 ALA TYR ALA SER TYR THR GLU ILE PHE GLN PRO GLN ASN SEQRES 39 A 707 ALA ARG ASP THR SER GLY GLY ILE LEU PRO PRO ILE LYS SEQRES 40 A 707 SER LYS SER TYR GLU LEU GLY LEU LYS ALA ALA TYR LEU SEQRES 41 A 707 GLU GLY ARG LEU ASN THR SER ALA ALA LEU PHE GLN THR SEQRES 42 A 707 ARG GLN ASP ASN LEU ALA GLN VAL ILE PRO GLY SER SER SEQRES 43 A 707 ILE PRO GLY PHE PRO ASN MET GLN ALA SER ARG ALA ALA SEQRES 44 A 707 SER GLY ALA LYS VAL GLU GLY ILE ASP LEU GLU ALA SER SEQRES 45 A 707 GLY GLN ILE LEU PRO ASP TRP ASN ILE GLY ALA SER TYR SEQRES 46 A 707 THR HIS PHE THR THR LYS ASP ALA SER GLY ASN PRO ILE SEQRES 47 A 707 ASN THR ASN HIS PRO ARG SER LEU PHE LYS LEU TYR THR SEQRES 48 A 707 THR TYR ARG LEU PRO GLY ALA LEU HIS ARG LEU THR VAL SEQRES 49 A 707 GLY GLY GLY VAL ASP TRP GLN SER ARG MET TYR GLN ALA SEQRES 50 A 707 ALA ALA SER PRO ARG GLY ASN VAL GLU VAL GLU GLN ASP SEQRES 51 A 707 SER TYR ALA LEU VAL SER LEU MET ALA ARG PHE ASP PHE SEQRES 52 A 707 ASN LYS LYS LEU SER ALA THR LEU ASN VAL ASN ASN LEU SEQRES 53 A 707 PHE ASP LYS LYS TYR TYR ASP GLN ILE GLY PHE TYR SER SEQRES 54 A 707 GLN GLY TRP TRP GLY ALA PRO ARG ASN VAL MET LEU ASN SEQRES 55 A 707 LEU ARG ALA GLN TYR HET SO4 A 653 5 HET SO4 A 654 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *136(H2 O) HELIX 1 1 SER A 46 THR A 50 5 5 HELIX 2 2 THR A 58 GLN A 65 1 8 HELIX 3 3 ASP A 69 THR A 76 1 8 HELIX 4 4 LEU A 112 ASN A 116 5 5 HELIX 5 5 GLY A 118 MET A 122 5 5 HELIX 6 6 ASP A 123 ALA A 125 5 3 HELIX 7 7 THR A 137 GLY A 142 1 6 HELIX 8 8 LEU A 474 GLY A 476 5 3 SHEET 1 A 5 VAL A 54 VAL A 57 0 SHEET 2 A 5 TYR A 127 ARG A 134 -1 O ILE A 132 N SER A 55 SHEET 3 A 5 ALA A 148 ARG A 154 -1 O ASN A 151 N GLU A 131 SHEET 4 A 5 ASN A 101 PHE A 104 1 N GLN A 103 O VAL A 150 SHEET 5 A 5 LEU A 107 PRO A 110 -1 O SER A 109 N PHE A 102 SHEET 1 B 3 SER A 81 THR A 83 0 SHEET 2 B 3 SER A 91 ALA A 94 -1 O SER A 93 N SER A 81 SHEET 3 B 3 PHE A 97 THR A 98 -1 O PHE A 97 N ALA A 94 SHEET 1 C23 ALA A 162 GLY A 170 0 SHEET 2 C23 TYR A 174 PRO A 184 -1 O ARG A 176 N SER A 168 SHEET 3 C23 ILE A 191 GLY A 202 -1 O LEU A 195 N ILE A 181 SHEET 4 C23 THR A 211 THR A 225 -1 O TYR A 217 N VAL A 196 SHEET 5 C23 THR A 228 SER A 241 -1 O HIS A 240 N ARG A 212 SHEET 6 C23 GLN A 261 ARG A 275 -1 O GLN A 261 N SER A 241 SHEET 7 C23 LYS A 281 HIS A 297 -1 O LEU A 294 N ASP A 262 SHEET 8 C23 SER A 302 ALA A 323 -1 O LEU A 308 N GLY A 291 SHEET 9 C23 LEU A 326 ALA A 347 -1 O HIS A 328 N PHE A 321 SHEET 10 C23 ALA A 368 ALA A 387 -1 O THR A 373 N ASN A 339 SHEET 11 C23 LEU A 390 TYR A 407 -1 O MET A 406 N ASP A 370 SHEET 12 C23 SER A 410 ASP A 429 -1 O GLN A 419 N SER A 399 SHEET 13 C23 TYR A 434 GLN A 445 -1 O ALA A 436 N TYR A 428 SHEET 14 C23 ILE A 460 TYR A 473 -1 O LYS A 470 N THR A 435 SHEET 15 C23 LEU A 478 ASP A 490 -1 O GLN A 486 N TYR A 465 SHEET 16 C23 LYS A 517 LEU A 530 -1 O VAL A 518 N THR A 487 SHEET 17 C23 TRP A 533 LYS A 545 -1 O TYR A 539 N LEU A 523 SHEET 18 C23 SER A 559 ARG A 568 -1 O LYS A 562 N SER A 538 SHEET 19 C23 LEU A 576 SER A 586 -1 O TRP A 584 N PHE A 561 SHEET 20 C23 TYR A 597 ASN A 609 -1 O SER A 601 N GLY A 581 SHEET 21 C23 LEU A 612 ASN A 619 -1 O VAL A 618 N LEU A 602 SHEET 22 C23 ASN A 643 GLN A 651 -1 O ARG A 649 N SER A 613 SHEET 23 C23 ALA A 162 GLY A 170 -1 N VAL A 169 O LEU A 646 SHEET 1 D 2 LEU A 492 VAL A 495 0 SHEET 2 D 2 SER A 510 ALA A 513 -1 O ALA A 513 N LEU A 492 SITE 1 AC1 3 LYS A 461 LYS A 463 ASN A 491 SITE 1 AC2 3 ARG A 383 HOH A 745 HOH A 778 CRYST1 165.893 188.847 62.437 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016016 0.00000