HEADER TRANSFERASE 12-SEP-08 3EHJ TITLE CRYSTAL STRUCTURE OF DESKC-H188V IN COMPLEX WITH AMP-PCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR KINASE (YOCF PROTEIN); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ENTIRE CYTOPLASMIC REGION; COMPND 5 SYNONYM: DESK HISTIDINE KINASE; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YOCF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE32 KEYWDS FOUR-HELIX BUNDLE, GHL ATPASE DOMAIN, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.ALBANESI,P.M.ALZARI,A.BUSCHIAZZO REVDAT 3 10-NOV-21 3EHJ 1 REMARK SEQADV LINK REVDAT 2 28-JUL-10 3EHJ 1 JRNL REVDAT 1 15-SEP-09 3EHJ 0 JRNL AUTH D.ALBANESI,M.MARTIN,F.TRAJTENBERG,M.C.MANSILLA,A.HAOUZ, JRNL AUTH 2 P.M.ALZARI,D.DE MENDOZA,A.BUSCHIAZZO JRNL TITL STRUCTURAL PLASTICITY AND CATALYSIS REGULATION OF A JRNL TITL 2 THERMOSENSOR HISTIDINE KINASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 16185 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805278 JRNL DOI 10.1073/PNAS.0906699106 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1313 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -2.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.94000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.427 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3424 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2365 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4599 ; 2.030 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5799 ; 1.069 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.327 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;42.632 ;25.096 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 693 ;19.101 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.745 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 528 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3691 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 622 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2083 ; 1.204 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 846 ; 0.245 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3337 ; 2.081 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 3.092 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1258 ; 5.323 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 180 A 242 3 REMARK 3 1 B 180 B 242 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 369 ; 0.070 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 469 ; 0.070 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 369 ; 0.240 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 469 ; 0.620 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 245 A 367 3 REMARK 3 1 B 245 B 367 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 698 ; 0.040 ; 0.050 REMARK 3 LOOSE POSITIONAL 2 A (A): 828 ; 0.070 ; 5.000 REMARK 3 TIGHT THERMAL 2 A (A**2): 698 ; 0.420 ; 0.500 REMARK 3 LOOSE THERMAL 2 A (A**2): 828 ; 0.670 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 242 REMARK 3 RESIDUE RANGE : B 156 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4110 -0.5380 29.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.0579 REMARK 3 T33: 0.1071 T12: 0.0229 REMARK 3 T13: -0.0110 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.1843 L22: 1.3192 REMARK 3 L33: 2.8883 L12: 0.3426 REMARK 3 L13: -1.4898 L23: 0.0283 REMARK 3 S TENSOR REMARK 3 S11: 0.1242 S12: -0.1446 S13: -0.1526 REMARK 3 S21: 0.0407 S22: -0.0467 S23: 0.0774 REMARK 3 S31: -0.0721 S32: 0.0080 S33: -0.0774 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 243 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6170 14.4380 51.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.2585 T22: 0.0302 REMARK 3 T33: 0.0914 T12: 0.0024 REMARK 3 T13: -0.0051 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.2846 L22: 3.9420 REMARK 3 L33: 10.0208 L12: 0.3768 REMARK 3 L13: 0.7670 L23: 0.2716 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: 0.1849 S13: -0.1004 REMARK 3 S21: 0.2402 S22: 0.0148 S23: -0.2525 REMARK 3 S31: 0.0272 S32: 0.2692 S33: 0.0290 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 243 B 369 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4380 -14.5770 9.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0254 REMARK 3 T33: 0.1023 T12: 0.0137 REMARK 3 T13: -0.0022 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 4.1715 L22: 3.9124 REMARK 3 L33: 8.1878 L12: -0.3158 REMARK 3 L13: 4.9060 L23: 0.1470 REMARK 3 S TENSOR REMARK 3 S11: -0.1241 S12: 0.0890 S13: 0.1630 REMARK 3 S21: 0.1791 S22: 0.0470 S23: -0.2680 REMARK 3 S31: 0.0307 S32: 0.3420 S33: 0.0772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B ANISOU REMARK 3 RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 4 REMARK 4 3EHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : CHANNEL-CUT REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19539 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, CACL2, BICINE, ADP, PH 9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 153 REMARK 465 ARG A 154 REMARK 465 LYS A 155 REMARK 465 GLU A 156 REMARK 465 ARG A 157 REMARK 465 GLU A 158 REMARK 465 ARG A 159 REMARK 465 LEU A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 465 SER A 332 REMARK 465 LYS A 333 REMARK 465 GLY A 334 REMARK 465 SER A 369 REMARK 465 LYS A 370 REMARK 465 GLY B 153 REMARK 465 ARG B 154 REMARK 465 LYS B 155 REMARK 465 SER B 332 REMARK 465 LYS B 333 REMARK 465 GLY B 334 REMARK 465 LYS B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 163 CB CG CD CE NZ REMARK 470 LEU A 164 CB CG CD1 CD2 REMARK 470 GLU A 165 CB CG CD OE1 OE2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 328 CB CG CD OE1 OE2 REMARK 470 ASN A 329 CB CG OD1 ND2 REMARK 470 ARG B 228 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 328 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 249 CG GLU B 249 CD 0.092 REMARK 500 VAL B 291 CB VAL B 291 CG2 0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 304 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 212 69.95 -158.60 REMARK 500 LEU A 310 -149.26 -91.92 REMARK 500 TRP A 311 -79.50 -72.63 REMARK 500 ASP B 212 72.88 -158.22 REMARK 500 LEU B 310 -143.59 -87.67 REMARK 500 TRP B 311 -84.55 -79.70 REMARK 500 SER B 330 54.53 -69.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 289 OE2 REMARK 620 2 ASN A 293 OD1 96.7 REMARK 620 3 ACP A1303 O1G 83.9 147.0 REMARK 620 4 ACP A1303 O3G 128.6 133.0 62.0 REMARK 620 5 ACP A1303 O2B 144.1 89.0 72.9 62.5 REMARK 620 6 ACP A1303 O1A 82.4 83.5 63.8 110.9 63.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 19 O REMARK 620 2 GLU B 289 OE2 82.3 REMARK 620 3 ASN B 293 OD1 99.1 99.8 REMARK 620 4 ACP B1303 O3G 105.9 91.3 153.8 REMARK 620 5 ACP B1303 O2B 113.2 156.2 95.5 67.6 REMARK 620 6 ACP B1303 O1A 165.3 89.9 94.5 61.7 70.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EHF RELATED DB: PDB REMARK 900 RELATED ID: 3EHG RELATED DB: PDB REMARK 900 RELATED ID: 3EHH RELATED DB: PDB DBREF 3EHJ A 154 370 UNP O34757 O34757_BACSU 154 370 DBREF 3EHJ B 154 370 UNP O34757 O34757_BACSU 154 370 SEQADV 3EHJ GLY A 153 UNP O34757 EXPRESSION TAG SEQADV 3EHJ MSE A 183 UNP O34757 ILE 183 ENGINEERED MUTATION SEQADV 3EHJ VAL A 188 UNP O34757 HIS 188 ENGINEERED MUTATION SEQADV 3EHJ MSE A 198 UNP O34757 ILE 198 ENGINEERED MUTATION SEQADV 3EHJ GLY B 153 UNP O34757 EXPRESSION TAG SEQADV 3EHJ MSE B 183 UNP O34757 ILE 183 ENGINEERED MUTATION SEQADV 3EHJ VAL B 188 UNP O34757 HIS 188 ENGINEERED MUTATION SEQADV 3EHJ MSE B 198 UNP O34757 ILE 198 ENGINEERED MUTATION SEQRES 1 A 218 GLY ARG LYS GLU ARG GLU ARG LEU GLU GLU LYS LEU GLU SEQRES 2 A 218 ASP ALA ASN GLU ARG ILE ALA GLU LEU VAL LYS LEU GLU SEQRES 3 A 218 GLU ARG GLN ARG MSE ALA ARG ASP LEU VAL ASP THR LEU SEQRES 4 A 218 GLY GLN LYS LEU SER LEU MSE GLY LEU LYS SER ASP LEU SEQRES 5 A 218 ALA ARG LYS LEU ILE TYR LYS ASP PRO GLU GLN ALA ALA SEQRES 6 A 218 ARG GLU LEU LYS SER VAL GLN GLN THR ALA ARG THR SER SEQRES 7 A 218 LEU ASN GLU VAL ARG LYS ILE VAL SER SER MSE LYS GLY SEQRES 8 A 218 ILE ARG LEU LYS ASP GLU LEU ILE ASN ILE LYS GLN ILE SEQRES 9 A 218 LEU GLU ALA ALA ASP ILE MSE PHE ILE TYR GLU GLU GLU SEQRES 10 A 218 LYS TRP PRO GLU ASN ILE SER LEU LEU ASN GLU ASN ILE SEQRES 11 A 218 LEU SER MSE CYS LEU LYS GLU ALA VAL THR ASN VAL VAL SEQRES 12 A 218 LYS HIS SER GLN ALA LYS THR CYS ARG VAL ASP ILE GLN SEQRES 13 A 218 GLN LEU TRP LYS GLU VAL VAL ILE THR VAL SER ASP ASP SEQRES 14 A 218 GLY THR PHE LYS GLY GLU GLU ASN SER PHE SER LYS GLY SEQRES 15 A 218 HIS GLY LEU LEU GLY MSE ARG GLU ARG LEU GLU PHE ALA SEQRES 16 A 218 ASN GLY SER LEU HIS ILE ASP THR GLU ASN GLY THR LYS SEQRES 17 A 218 LEU THR MSE ALA ILE PRO ASN ASN SER LYS SEQRES 1 B 218 GLY ARG LYS GLU ARG GLU ARG LEU GLU GLU LYS LEU GLU SEQRES 2 B 218 ASP ALA ASN GLU ARG ILE ALA GLU LEU VAL LYS LEU GLU SEQRES 3 B 218 GLU ARG GLN ARG MSE ALA ARG ASP LEU VAL ASP THR LEU SEQRES 4 B 218 GLY GLN LYS LEU SER LEU MSE GLY LEU LYS SER ASP LEU SEQRES 5 B 218 ALA ARG LYS LEU ILE TYR LYS ASP PRO GLU GLN ALA ALA SEQRES 6 B 218 ARG GLU LEU LYS SER VAL GLN GLN THR ALA ARG THR SER SEQRES 7 B 218 LEU ASN GLU VAL ARG LYS ILE VAL SER SER MSE LYS GLY SEQRES 8 B 218 ILE ARG LEU LYS ASP GLU LEU ILE ASN ILE LYS GLN ILE SEQRES 9 B 218 LEU GLU ALA ALA ASP ILE MSE PHE ILE TYR GLU GLU GLU SEQRES 10 B 218 LYS TRP PRO GLU ASN ILE SER LEU LEU ASN GLU ASN ILE SEQRES 11 B 218 LEU SER MSE CYS LEU LYS GLU ALA VAL THR ASN VAL VAL SEQRES 12 B 218 LYS HIS SER GLN ALA LYS THR CYS ARG VAL ASP ILE GLN SEQRES 13 B 218 GLN LEU TRP LYS GLU VAL VAL ILE THR VAL SER ASP ASP SEQRES 14 B 218 GLY THR PHE LYS GLY GLU GLU ASN SER PHE SER LYS GLY SEQRES 15 B 218 HIS GLY LEU LEU GLY MSE ARG GLU ARG LEU GLU PHE ALA SEQRES 16 B 218 ASN GLY SER LEU HIS ILE ASP THR GLU ASN GLY THR LYS SEQRES 17 B 218 LEU THR MSE ALA ILE PRO ASN ASN SER LYS MODRES 3EHJ MSE A 183 MET SELENOMETHIONINE MODRES 3EHJ MSE A 198 MET SELENOMETHIONINE MODRES 3EHJ MSE A 241 MET SELENOMETHIONINE MODRES 3EHJ MSE A 263 MET SELENOMETHIONINE MODRES 3EHJ MSE A 285 MET SELENOMETHIONINE MODRES 3EHJ MSE A 340 MET SELENOMETHIONINE MODRES 3EHJ MSE A 363 MET SELENOMETHIONINE MODRES 3EHJ MSE B 183 MET SELENOMETHIONINE MODRES 3EHJ MSE B 198 MET SELENOMETHIONINE MODRES 3EHJ MSE B 241 MET SELENOMETHIONINE MODRES 3EHJ MSE B 263 MET SELENOMETHIONINE MODRES 3EHJ MSE B 285 MET SELENOMETHIONINE MODRES 3EHJ MSE B 340 MET SELENOMETHIONINE MODRES 3EHJ MSE B 363 MET SELENOMETHIONINE HET MSE A 183 8 HET MSE A 198 8 HET MSE A 241 8 HET MSE A 263 8 HET MSE A 285 8 HET MSE A 340 8 HET MSE A 363 8 HET MSE B 183 8 HET MSE B 198 8 HET MSE B 241 8 HET MSE B 263 8 HET MSE B 285 13 HET MSE B 340 8 HET MSE B 363 13 HET ACP A1303 31 HET CA A 1 1 HET ACP B1303 31 HET CA B 1 1 HETNAM MSE SELENOMETHIONINE HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM CA CALCIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 ACP 2(C11 H18 N5 O12 P3) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *53(H2 O) HELIX 1 1 LYS A 163 VAL A 175 1 13 HELIX 2 2 LYS A 176 ILE A 209 1 34 HELIX 3 3 ASP A 212 VAL A 238 1 27 HELIX 4 4 ARG A 245 ALA A 260 1 16 HELIX 5 5 SER A 276 SER A 298 1 23 HELIX 6 6 HIS A 335 ALA A 347 1 13 HELIX 7 7 GLU B 156 ILE B 209 1 54 HELIX 8 8 ASP B 212 LYS B 236 1 25 HELIX 9 9 ARG B 245 ALA B 260 1 16 HELIX 10 10 SER B 276 SER B 298 1 23 HELIX 11 11 HIS B 335 ALA B 347 1 13 SHEET 1 A 5 MSE A 263 ILE A 265 0 SHEET 2 A 5 THR A 302 GLN A 309 1 O CYS A 303 N MSE A 263 SHEET 3 A 5 GLU A 313 ASP A 320 -1 O SER A 319 N ARG A 304 SHEET 4 A 5 THR A 359 PRO A 366 -1 O MSE A 363 N ILE A 316 SHEET 5 A 5 SER A 350 ASP A 354 -1 N ASP A 354 O LYS A 360 SHEET 1 B 5 MSE B 263 ILE B 265 0 SHEET 2 B 5 THR B 302 GLN B 309 1 O CYS B 303 N MSE B 263 SHEET 3 B 5 GLU B 313 ASP B 320 -1 O SER B 319 N ARG B 304 SHEET 4 B 5 THR B 359 PRO B 366 -1 O MSE B 363 N ILE B 316 SHEET 5 B 5 SER B 350 ASP B 354 -1 N ASP B 354 O LYS B 360 LINK C ARG A 182 N MSE A 183 1555 1555 1.34 LINK C MSE A 183 N ALA A 184 1555 1555 1.34 LINK C LEU A 197 N MSE A 198 1555 1555 1.32 LINK C MSE A 198 N GLY A 199 1555 1555 1.34 LINK C SER A 240 N MSE A 241 1555 1555 1.34 LINK C MSE A 241 N LYS A 242 1555 1555 1.34 LINK C ILE A 262 N MSE A 263 1555 1555 1.31 LINK C MSE A 263 N PHE A 264 1555 1555 1.32 LINK C SER A 284 N MSE A 285 1555 1555 1.30 LINK C MSE A 285 N CYS A 286 1555 1555 1.32 LINK C GLY A 339 N MSE A 340 1555 1555 1.33 LINK C MSE A 340 N ARG A 341 1555 1555 1.32 LINK C THR A 362 N MSE A 363 1555 1555 1.30 LINK C MSE A 363 N ALA A 364 1555 1555 1.34 LINK C ARG B 182 N MSE B 183 1555 1555 1.33 LINK C MSE B 183 N ALA B 184 1555 1555 1.32 LINK C LEU B 197 N MSE B 198 1555 1555 1.32 LINK C MSE B 198 N GLY B 199 1555 1555 1.33 LINK C SER B 240 N MSE B 241 1555 1555 1.33 LINK C MSE B 241 N LYS B 242 1555 1555 1.34 LINK C ILE B 262 N MSE B 263 1555 1555 1.30 LINK C MSE B 263 N PHE B 264 1555 1555 1.33 LINK C SER B 284 N MSE B 285 1555 1555 1.31 LINK C MSE B 285 N CYS B 286 1555 1555 1.32 LINK C GLY B 339 N MSE B 340 1555 1555 1.33 LINK C MSE B 340 N ARG B 341 1555 1555 1.33 LINK C THR B 362 N MSE B 363 1555 1555 1.31 LINK C MSE B 363 N ALA B 364 1555 1555 1.33 LINK CA CA A 1 OE2 GLU A 289 1555 1555 2.28 LINK CA CA A 1 OD1 ASN A 293 1555 1555 2.33 LINK CA CA A 1 O1G ACP A1303 1555 1555 2.70 LINK CA CA A 1 O3G ACP A1303 1555 1555 2.31 LINK CA CA A 1 O2B ACP A1303 1555 1555 2.30 LINK CA CA A 1 O1A ACP A1303 1555 1555 2.27 LINK CA CA B 1 O HOH B 19 1555 1555 2.28 LINK CA CA B 1 OE2 GLU B 289 1555 1555 2.30 LINK CA CA B 1 OD1 ASN B 293 1555 1555 2.29 LINK CA CA B 1 O3G ACP B1303 1555 1555 2.32 LINK CA CA B 1 O2B ACP B1303 1555 1555 2.30 LINK CA CA B 1 O1A ACP B1303 1555 1555 2.20 SITE 1 AC1 16 CA A 1 HOH A 8 HOH A 55 GLU A 289 SITE 2 AC1 16 ASN A 293 HIS A 297 SER A 298 ASP A 320 SITE 3 AC1 16 THR A 323 PHE A 324 LYS A 325 GLY A 326 SITE 4 AC1 16 HIS A 335 GLY A 336 LEU A 337 THR A 359 SITE 1 AC2 3 GLU A 289 ASN A 293 ACP A1303 SITE 1 AC3 17 CA B 1 HOH B 2 HOH B 19 HOH B 38 SITE 2 AC3 17 GLU B 289 ASN B 293 HIS B 297 SER B 298 SITE 3 AC3 17 ASP B 320 THR B 323 PHE B 324 LYS B 325 SITE 4 AC3 17 GLY B 326 HIS B 335 GLY B 336 LEU B 337 SITE 5 AC3 17 THR B 359 SITE 1 AC4 4 HOH B 19 GLU B 289 ASN B 293 ACP B1303 CRYST1 62.300 34.300 131.200 90.00 96.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016051 0.000000 0.001857 0.00000 SCALE2 0.000000 0.029155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007673 0.00000