HEADER ANTITUMOR PROTEIN 16-SEP-08 3EIJ TITLE CRYSTAL STRUCTURE OF PDCD4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 157-469; COMPND 5 SYNONYM: NUCLEAR ANTIGEN H731-LIKE, NEOPLASTIC TRANSFORMATION COMPND 6 INHIBITOR PROTEIN, PROTEIN 197/15A; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS PROTEIN, HEAT MOTIF, ANTI-ONCOGENE, APOPTOSIS, CELL CYCLE, NUCLEUS, KEYWDS 2 PHOSPHOPROTEIN, RNA-BINDING, TRANSLATION, ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.G.LOH REVDAT 3 20-MAR-24 3EIJ 1 SEQADV REVDAT 2 13-JUL-11 3EIJ 1 VERSN REVDAT 1 17-FEB-09 3EIJ 0 JRNL AUTH P.G.LOH,H.-S.YANG,M.A.WALSH,Q.WANG,X.WANG,Z.CHENG,D.LIU, JRNL AUTH 2 H.SONG JRNL TITL STRUCTURAL BASIS FOR TRANSLATIONAL INHIBITION BY THE TUMOUR JRNL TITL 2 SUPPRESSOR PDCD4 JRNL REF EMBO J. V. 28 274 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19153607 JRNL DOI 10.1038/EMBOJ.2008.278 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1394 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1976 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.438 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4430 ; 0.004 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5980 ; 0.806 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 3.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;37.367 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 842 ;16.597 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3216 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2213 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3141 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.321 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.356 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2750 ; 0.221 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4452 ; 0.419 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1680 ; 0.465 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1528 ; 0.826 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): -66.5971 83.2157 -26.9134 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.1556 REMARK 3 T33: 0.1744 T12: -0.0507 REMARK 3 T13: -0.0432 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.1992 L22: 1.8114 REMARK 3 L33: 3.9973 L12: 0.3534 REMARK 3 L13: 0.5698 L23: 0.5066 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: 0.0148 S13: 0.2015 REMARK 3 S21: 0.0002 S22: -0.0941 S23: 0.0996 REMARK 3 S31: 0.0199 S32: -0.3156 S33: 0.0537 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 324 A 450 REMARK 3 ORIGIN FOR THE GROUP (A): -64.8536 64.1974 -57.3137 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.3080 REMARK 3 T33: 0.1358 T12: -0.1166 REMARK 3 T13: -0.0493 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 2.3549 L22: 1.8009 REMARK 3 L33: 4.6867 L12: 0.1022 REMARK 3 L13: 1.1672 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: -0.1765 S12: 0.3112 S13: 0.1951 REMARK 3 S21: 0.0117 S22: -0.0650 S23: -0.1114 REMARK 3 S31: -0.4600 S32: 0.1321 S33: 0.2416 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 157 B 306 REMARK 3 ORIGIN FOR THE GROUP (A): -43.7368 42.2252 -52.8415 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.2168 REMARK 3 T33: 0.4231 T12: -0.0928 REMARK 3 T13: 0.0472 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.6684 L22: 3.5071 REMARK 3 L33: 4.4025 L12: -0.1373 REMARK 3 L13: -1.0071 L23: -1.0738 REMARK 3 S TENSOR REMARK 3 S11: -0.1918 S12: 0.2623 S13: -0.1896 REMARK 3 S21: -0.0880 S22: -0.0894 S23: -0.8375 REMARK 3 S31: 0.2370 S32: 0.2941 S33: 0.2812 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 324 B 450 REMARK 3 ORIGIN FOR THE GROUP (A): -65.8283 52.5404 -27.2198 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.1661 REMARK 3 T33: 0.0850 T12: -0.0326 REMARK 3 T13: -0.0578 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.1194 L22: 2.1339 REMARK 3 L33: 3.5138 L12: 0.6848 REMARK 3 L13: -1.0186 L23: 0.0845 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: -0.0768 S13: -0.1157 REMARK 3 S21: 0.2551 S22: 0.0693 S23: -0.0506 REMARK 3 S31: 0.1492 S32: 0.0648 S33: 0.0099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27711 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG MME 2000, 0.1M TRIS-HCL PH8.5, REMARK 280 0.2M TRIMETHYLAMINE N-OXIDE (TMAO), 10MM DTT, 10MM SARCOSINE, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.30633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.61267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.61267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.30633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 149 REMARK 465 PRO A 150 REMARK 465 LEU A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 PRO A 154 REMARK 465 GLY A 284 REMARK 465 THR A 285 REMARK 465 VAL A 286 REMARK 465 GLY A 307 REMARK 465 GLY A 308 REMARK 465 LYS A 309 REMARK 465 ARG A 310 REMARK 465 LYS A 311 REMARK 465 ASP A 312 REMARK 465 SER A 313 REMARK 465 VAL A 314 REMARK 465 TRP A 315 REMARK 465 GLY A 316 REMARK 465 SER A 317 REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 GLY A 320 REMARK 465 GLN A 321 REMARK 465 GLN A 322 REMARK 465 SER A 323 REMARK 465 GLY A 451 REMARK 465 ARG A 452 REMARK 465 LYS A 453 REMARK 465 ARG A 454 REMARK 465 PHE A 455 REMARK 465 VAL A 456 REMARK 465 SER A 457 REMARK 465 GLU A 458 REMARK 465 GLY A 459 REMARK 465 ASP A 460 REMARK 465 GLY A 461 REMARK 465 GLY A 462 REMARK 465 ARG A 463 REMARK 465 LEU A 464 REMARK 465 LYS A 465 REMARK 465 PRO A 466 REMARK 465 GLU A 467 REMARK 465 SER A 468 REMARK 465 TYR A 469 REMARK 465 GLY B 149 REMARK 465 PRO B 150 REMARK 465 LEU B 151 REMARK 465 GLY B 152 REMARK 465 SER B 153 REMARK 465 PRO B 154 REMARK 465 GLY B 284 REMARK 465 THR B 285 REMARK 465 VAL B 286 REMARK 465 GLY B 307 REMARK 465 GLY B 308 REMARK 465 LYS B 309 REMARK 465 ARG B 310 REMARK 465 LYS B 311 REMARK 465 ASP B 312 REMARK 465 SER B 313 REMARK 465 VAL B 314 REMARK 465 TRP B 315 REMARK 465 GLY B 316 REMARK 465 SER B 317 REMARK 465 GLY B 318 REMARK 465 GLY B 319 REMARK 465 GLY B 320 REMARK 465 GLN B 321 REMARK 465 GLN B 322 REMARK 465 SER B 323 REMARK 465 GLY B 451 REMARK 465 ARG B 452 REMARK 465 LYS B 453 REMARK 465 ARG B 454 REMARK 465 PHE B 455 REMARK 465 VAL B 456 REMARK 465 SER B 457 REMARK 465 GLU B 458 REMARK 465 GLY B 459 REMARK 465 ASP B 460 REMARK 465 GLY B 461 REMARK 465 GLY B 462 REMARK 465 ARG B 463 REMARK 465 LEU B 464 REMARK 465 LYS B 465 REMARK 465 PRO B 466 REMARK 465 GLU B 467 REMARK 465 SER B 468 REMARK 465 TYR B 469 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 403 O HOH A 9 0.45 REMARK 500 CZ ARG A 403 O HOH A 9 1.06 REMARK 500 CG2 VAL A 371 CD1 ILE A 383 1.69 REMARK 500 NH2 ARG A 403 O HOH A 9 1.90 REMARK 500 O LEU B 351 O HOH B 4 2.04 REMARK 500 OG1 THR B 397 OD2 ASP B 399 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 229 -57.80 -135.86 REMARK 500 CYS A 288 98.24 75.55 REMARK 500 ASN A 325 86.93 57.77 REMARK 500 THR A 397 171.02 -56.70 REMARK 500 THR B 229 -59.79 -128.43 REMARK 500 CYS B 288 96.94 72.47 REMARK 500 ASN B 325 83.44 55.09 REMARK 500 GLU B 377 -126.70 -57.75 REMARK 500 SER B 378 -77.25 59.75 REMARK 500 PRO B 420 -177.65 -63.31 REMARK 500 HIS B 421 -24.58 71.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EIQ RELATED DB: PDB DBREF 3EIJ A 157 469 UNP Q53EL6 PDCD4_HUMAN 157 469 DBREF 3EIJ B 157 469 UNP Q53EL6 PDCD4_HUMAN 157 469 SEQADV 3EIJ GLY A 149 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ PRO A 150 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ LEU A 151 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ GLY A 152 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ SER A 153 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ PRO A 154 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ GLU A 155 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ PHE A 156 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ GLY B 149 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ PRO B 150 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ LEU B 151 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ GLY B 152 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ SER B 153 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ PRO B 154 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ GLU B 155 UNP Q53EL6 EXPRESSION TAG SEQADV 3EIJ PHE B 156 UNP Q53EL6 EXPRESSION TAG SEQRES 1 A 321 GLY PRO LEU GLY SER PRO GLU PHE LEU PRO LEU ASP GLU SEQRES 2 A 321 ARG ALA PHE GLU LYS THR LEU THR PRO ILE ILE GLN GLU SEQRES 3 A 321 TYR PHE GLU HIS GLY ASP THR ASN GLU VAL ALA GLU MET SEQRES 4 A 321 LEU ARG ASP LEU ASN LEU GLY GLU MET LYS SER GLY VAL SEQRES 5 A 321 PRO VAL LEU ALA VAL SER LEU ALA LEU GLU GLY LYS ALA SEQRES 6 A 321 SER HIS ARG GLU MET THR SER LYS LEU LEU SER ASP LEU SEQRES 7 A 321 CYS GLY THR VAL MET SER THR THR ASP VAL GLU LYS SER SEQRES 8 A 321 PHE ASP LYS LEU LEU LYS ASP LEU PRO GLU LEU ALA LEU SEQRES 9 A 321 ASP THR PRO ARG ALA PRO GLN LEU VAL GLY GLN PHE ILE SEQRES 10 A 321 ALA ARG ALA VAL GLY ASP GLY ILE LEU CYS ASN THR TYR SEQRES 11 A 321 ILE ASP SER TYR LYS GLY THR VAL ASP CYS VAL GLN ALA SEQRES 12 A 321 ARG ALA ALA LEU ASP LYS ALA THR VAL LEU LEU SER MET SEQRES 13 A 321 SER LYS GLY GLY LYS ARG LYS ASP SER VAL TRP GLY SER SEQRES 14 A 321 GLY GLY GLY GLN GLN SER VAL ASN HIS LEU VAL LYS GLU SEQRES 15 A 321 ILE ASP MET LEU LEU LYS GLU TYR LEU LEU SER GLY ASP SEQRES 16 A 321 ILE SER GLU ALA GLU HIS CYS LEU LYS GLU LEU GLU VAL SEQRES 17 A 321 PRO HIS PHE HIS HIS GLU LEU VAL TYR GLU ALA ILE ILE SEQRES 18 A 321 MET VAL LEU GLU SER THR GLY GLU SER THR PHE LYS MET SEQRES 19 A 321 ILE LEU ASP LEU LEU LYS SER LEU TRP LYS SER SER THR SEQRES 20 A 321 ILE THR VAL ASP GLN MET LYS ARG GLY TYR GLU ARG ILE SEQRES 21 A 321 TYR ASN GLU ILE PRO ASP ILE ASN LEU ASP VAL PRO HIS SEQRES 22 A 321 SER TYR SER VAL LEU GLU ARG PHE VAL GLU GLU CYS PHE SEQRES 23 A 321 GLN ALA GLY ILE ILE SER LYS GLN LEU ARG ASP LEU CYS SEQRES 24 A 321 PRO SER ARG GLY ARG LYS ARG PHE VAL SER GLU GLY ASP SEQRES 25 A 321 GLY GLY ARG LEU LYS PRO GLU SER TYR SEQRES 1 B 321 GLY PRO LEU GLY SER PRO GLU PHE LEU PRO LEU ASP GLU SEQRES 2 B 321 ARG ALA PHE GLU LYS THR LEU THR PRO ILE ILE GLN GLU SEQRES 3 B 321 TYR PHE GLU HIS GLY ASP THR ASN GLU VAL ALA GLU MET SEQRES 4 B 321 LEU ARG ASP LEU ASN LEU GLY GLU MET LYS SER GLY VAL SEQRES 5 B 321 PRO VAL LEU ALA VAL SER LEU ALA LEU GLU GLY LYS ALA SEQRES 6 B 321 SER HIS ARG GLU MET THR SER LYS LEU LEU SER ASP LEU SEQRES 7 B 321 CYS GLY THR VAL MET SER THR THR ASP VAL GLU LYS SER SEQRES 8 B 321 PHE ASP LYS LEU LEU LYS ASP LEU PRO GLU LEU ALA LEU SEQRES 9 B 321 ASP THR PRO ARG ALA PRO GLN LEU VAL GLY GLN PHE ILE SEQRES 10 B 321 ALA ARG ALA VAL GLY ASP GLY ILE LEU CYS ASN THR TYR SEQRES 11 B 321 ILE ASP SER TYR LYS GLY THR VAL ASP CYS VAL GLN ALA SEQRES 12 B 321 ARG ALA ALA LEU ASP LYS ALA THR VAL LEU LEU SER MET SEQRES 13 B 321 SER LYS GLY GLY LYS ARG LYS ASP SER VAL TRP GLY SER SEQRES 14 B 321 GLY GLY GLY GLN GLN SER VAL ASN HIS LEU VAL LYS GLU SEQRES 15 B 321 ILE ASP MET LEU LEU LYS GLU TYR LEU LEU SER GLY ASP SEQRES 16 B 321 ILE SER GLU ALA GLU HIS CYS LEU LYS GLU LEU GLU VAL SEQRES 17 B 321 PRO HIS PHE HIS HIS GLU LEU VAL TYR GLU ALA ILE ILE SEQRES 18 B 321 MET VAL LEU GLU SER THR GLY GLU SER THR PHE LYS MET SEQRES 19 B 321 ILE LEU ASP LEU LEU LYS SER LEU TRP LYS SER SER THR SEQRES 20 B 321 ILE THR VAL ASP GLN MET LYS ARG GLY TYR GLU ARG ILE SEQRES 21 B 321 TYR ASN GLU ILE PRO ASP ILE ASN LEU ASP VAL PRO HIS SEQRES 22 B 321 SER TYR SER VAL LEU GLU ARG PHE VAL GLU GLU CYS PHE SEQRES 23 B 321 GLN ALA GLY ILE ILE SER LYS GLN LEU ARG ASP LEU CYS SEQRES 24 B 321 PRO SER ARG GLY ARG LYS ARG PHE VAL SER GLU GLY ASP SEQRES 25 B 321 GLY GLY ARG LEU LYS PRO GLU SER TYR FORMUL 3 HOH *56(H2 O) HELIX 1 1 LEU A 157 GLY A 179 1 23 HELIX 2 2 ASP A 180 LEU A 191 1 12 HELIX 3 3 GLY A 194 LYS A 197 5 4 HELIX 4 4 SER A 198 GLU A 210 1 13 HELIX 5 5 ALA A 213 CYS A 227 1 15 HELIX 6 6 SER A 232 ASP A 246 1 15 HELIX 7 7 ASP A 246 THR A 254 1 9 HELIX 8 8 ARG A 256 ASP A 271 1 16 HELIX 9 9 CYS A 288 LYS A 306 1 19 HELIX 10 10 ASN A 325 GLY A 342 1 18 HELIX 11 11 ASP A 343 LEU A 354 1 12 HELIX 12 12 GLU A 355 PHE A 359 5 5 HELIX 13 13 HIS A 360 SER A 374 1 15 HELIX 14 14 GLY A 376 SER A 393 1 18 HELIX 15 15 THR A 397 VAL A 419 1 23 HELIX 16 16 HIS A 421 ALA A 436 1 16 HELIX 17 17 SER A 440 CYS A 447 1 8 HELIX 18 18 LEU B 157 GLY B 179 1 23 HELIX 19 19 ASP B 180 ASN B 192 1 13 HELIX 20 20 GLY B 194 LYS B 197 5 4 HELIX 21 21 SER B 198 GLU B 210 1 13 HELIX 22 22 ALA B 213 CYS B 227 1 15 HELIX 23 23 SER B 232 ASP B 246 1 15 HELIX 24 24 ASP B 246 THR B 254 1 9 HELIX 25 25 ARG B 256 ASP B 271 1 16 HELIX 26 26 CYS B 275 ILE B 279 5 5 HELIX 27 27 CYS B 288 LYS B 306 1 19 HELIX 28 28 ASN B 325 GLY B 342 1 18 HELIX 29 29 ASP B 343 LEU B 354 1 12 HELIX 30 30 VAL B 356 HIS B 358 5 3 HELIX 31 31 PHE B 359 SER B 374 1 16 HELIX 32 32 SER B 378 SER B 393 1 16 HELIX 33 33 THR B 397 VAL B 419 1 23 HELIX 34 34 HIS B 421 ALA B 436 1 16 HELIX 35 35 SER B 440 LEU B 446 1 7 CRYST1 170.325 170.325 66.919 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005871 0.003390 0.000000 0.00000 SCALE2 0.000000 0.006779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014943 0.00000