data_3EIL # _entry.id 3EIL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EIL pdb_00003eil 10.2210/pdb3eil/pdb NDB BD0106 ? ? RCSB RCSB049368 ? ? WWPDB D_1000049368 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EIL _pdbx_database_status.recvd_initial_deposition_date 2008-09-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Millonig, H.' 1 'Pous, J.' 2 'Campos, L.J.' 3 'Subirana, J.A.' 4 # _citation.id primary _citation.title 'The interaction of manganese ions with DNA' _citation.journal_abbrev J.Inorg.Biochem. _citation.journal_volume 103 _citation.page_first 876 _citation.page_last 880 _citation.year 2009 _citation.journal_id_ASTM JIBIDJ _citation.country US _citation.journal_id_ISSN 0162-0134 _citation.journal_id_CSD 0525 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19375803 _citation.pdbx_database_id_DOI 10.1016/j.jinorgbio.2009.03.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Millonig, H.' 1 ? primary 'Pous, J.' 2 ? primary 'Gouyette, C.' 3 ? primary 'Subirana, J.A.' 4 ? primary 'Campos, J.L.' 5 ? # _cell.entry_id 3EIL _cell.length_a 43.795 _cell.length_b 43.795 _cell.length_c 98.345 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EIL _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*DCP*DGP*DTP*DTP*DAP*DAP*DTP*DTP*DAP*DAP*DCP*DG)-3'" 3661.416 6 ? ? ? ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 7 ? ? ? ? 3 water nat water 18.015 34 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DT)(DA)(DA)(DT)(DT)(DA)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTTAATTAACG _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DA n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthesized by using the phosphoramidite method' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3EIL _struct_ref.pdbx_db_accession 3EIL _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code CGTTAATTAACG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EIL A 1 ? 12 ? 3EIL 1 ? 12 ? 1 12 2 1 3EIL B 1 ? 12 ? 3EIL 1 ? 12 ? 1 12 3 1 3EIL C 1 ? 12 ? 3EIL 1 ? 12 ? 1 12 4 1 3EIL D 1 ? 12 ? 3EIL 1 ? 12 ? 1 12 5 1 3EIL E 1 ? 12 ? 3EIL 1 ? 12 ? 1 12 6 1 3EIL F 1 ? 12 ? 3EIL 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 # _exptl.entry_id 3EIL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;25 mM Sodium Cacodylate, 10 mM Manganese, 25 mM spermine, 25 % MPD,0,1 mM DNA, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K ; # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Sodium Cacodylate' ? ? ? 1 2 1 Manganese ? ? ? 1 3 1 spermine ? ? ? 1 4 1 MPD ? ? ? 1 5 2 'Sodium Cacodylate' ? ? ? 1 6 2 Manganese ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-12-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97827 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM16' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM16 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97827 # _reflns.entry_id 3EIL _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 37.93 _reflns.d_resolution_high 2.41 _reflns.number_obs 6461 _reflns.number_all 6489 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.59 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.795 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3EIL _refine.ls_number_reflns_obs 6146 _refine.ls_number_reflns_all 6489 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.93 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.57 _refine.ls_R_factor_obs 0.23679 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23465 _refine.ls_R_factor_R_free 0.28471 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 316 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.B_iso_mean 56.315 _refine.aniso_B[1][1] 4.34 _refine.aniso_B[2][2] 4.34 _refine.aniso_B[3][3] -6.50 _refine.aniso_B[1][2] 2.17 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 463d' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.007 _refine.pdbx_overall_ESU_R_Free 0.360 _refine.overall_SU_ML 0.296 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 15.878 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1362 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 1403 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 37.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 1524 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 666 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.398 3.000 ? 2340 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.511 3.000 ? 1662 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.055 0.200 ? 264 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 702 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.004 0.020 ? 132 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 11.637 3.000 ? 1524 'X-RAY DIFFRACTION' ? r_scangle_it 11.061 4.500 ? 2340 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.601 _refine_ls_shell.d_res_low 2.668 _refine_ls_shell.number_reflns_R_work 436 _refine_ls_shell.R_factor_R_work 0.450 _refine_ls_shell.percent_reflns_obs 99.35 _refine_ls_shell.R_factor_R_free 0.534 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3EIL _struct.title 'Structure of B-DNA d(CGTTAATTAACG)2 in the presence of Manganese' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EIL _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, Manganese, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 12 OP1 ? ? ? 1_555 G MN . MN ? ? A DG 12 A MN 39 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc2 metalc ? ? H MN . MN ? ? ? 1_555 O HOH . O ? ? B MN 35 B HOH 36 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc3 metalc ? ? H MN . MN ? ? ? 1_555 O HOH . O ? ? B MN 35 B HOH 38 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc4 metalc ? ? C DG 12 OP1 ? ? ? 1_555 J MN . MN ? ? C DG 12 C MN 41 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc5 metalc ? ? K MN . MN ? ? ? 1_555 Q HOH . O ? ? D MN 38 D HOH 43 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc6 metalc ? ? F DG 12 OP1 ? ? ? 1_555 M MN . MN ? ? F DG 12 F MN 40 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc7 metalc ? ? L MN . MN ? ? ? 1_555 S HOH . O ? ? F MN 37 F HOH 44 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc8 metalc ? ? L MN . MN ? ? ? 1_555 S HOH . O ? ? F MN 37 F HOH 45 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc9 metalc ? ? M MN . MN ? ? ? 1_555 S HOH . O ? ? F MN 40 F HOH 41 1_555 ? ? ? ? ? ? ? 2.438 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 9 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 9 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 10 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 10 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 3 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 3 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 4 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 4 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 5 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 5 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 6 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 6 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 7 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 7 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 8 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 8 D DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 9 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 9 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 11 N3 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 11 O2 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 11 N4 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DT 3 N3 ? ? ? 1_555 F DA 10 N1 ? ? E DT 3 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DT 3 O4 ? ? ? 1_555 F DA 10 N6 ? ? E DT 3 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DT 4 N3 ? ? ? 1_555 F DA 9 N1 ? ? E DT 4 F DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DT 4 O4 ? ? ? 1_555 F DA 9 N6 ? ? E DT 4 F DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DA 5 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 5 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DA 5 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 5 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 7 N3 ? ? E DA 6 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 7 O4 ? ? E DA 6 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F DA 6 N1 ? ? E DT 7 F DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F DA 6 N6 ? ? E DT 7 F DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 5 N1 ? ? E DT 8 F DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 5 N6 ? ? E DT 8 F DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DA 9 N1 ? ? ? 1_555 F DT 4 N3 ? ? E DA 9 F DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DA 9 N6 ? ? ? 1_555 F DT 4 O4 ? ? E DA 9 F DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DA 10 N1 ? ? ? 1_555 F DT 3 N3 ? ? E DA 10 F DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DT 3 O4 ? ? E DA 10 F DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DC 11 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DC 11 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DC 11 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 39 ? 4 'BINDING SITE FOR RESIDUE MN A 39' AC2 Software B MN 35 ? 4 'BINDING SITE FOR RESIDUE MN B 35' AC3 Software C MN 36 ? 2 'BINDING SITE FOR RESIDUE MN C 36' AC4 Software C MN 41 ? 2 'BINDING SITE FOR RESIDUE MN C 41' AC5 Software D MN 38 ? 3 'BINDING SITE FOR RESIDUE MN D 38' AC6 Software F MN 37 ? 4 'BINDING SITE FOR RESIDUE MN F 37' AC7 Software F MN 40 ? 3 'BINDING SITE FOR RESIDUE MN F 40' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DG A 12 ? DG A 12 . ? 1_555 ? 2 AC1 4 DG B 12 ? DG B 12 . ? 3_565 ? 3 AC1 4 HOH O . ? HOH B 42 . ? 3_565 ? 4 AC1 4 HOH S . ? HOH F 42 . ? 2_665 ? 5 AC2 4 DG B 12 ? DG B 12 . ? 1_555 ? 6 AC2 4 HOH O . ? HOH B 36 . ? 1_555 ? 7 AC2 4 HOH O . ? HOH B 38 . ? 1_555 ? 8 AC2 4 DG D 12 ? DG D 12 . ? 1_555 ? 9 AC3 2 DG C 12 ? DG C 12 . ? 1_555 ? 10 AC3 2 DT F 7 ? DT F 7 . ? 1_545 ? 11 AC4 2 DG C 12 ? DG C 12 . ? 1_555 ? 12 AC4 2 DG D 12 ? DG D 12 . ? 2_654 ? 13 AC5 3 DT D 7 ? DT D 7 . ? 1_555 ? 14 AC5 3 HOH Q . ? HOH D 43 . ? 1_555 ? 15 AC5 3 DG E 12 ? DG E 12 . ? 1_545 ? 16 AC6 4 DG A 12 ? DG A 12 . ? 1_654 ? 17 AC6 4 DG F 12 ? DG F 12 . ? 1_555 ? 18 AC6 4 HOH S . ? HOH F 44 . ? 1_555 ? 19 AC6 4 HOH S . ? HOH F 45 . ? 1_555 ? 20 AC7 3 DG E 12 ? DG E 12 . ? 2_764 ? 21 AC7 3 DG F 12 ? DG F 12 . ? 1_555 ? 22 AC7 3 HOH S . ? HOH F 41 . ? 1_555 ? # _database_PDB_matrix.entry_id 3EIL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3EIL _atom_sites.fract_transf_matrix[1][1] 0.022834 _atom_sites.fract_transf_matrix[1][2] 0.013183 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026366 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010168 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 ? ? ? A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 1 ? ? ? B . n B 1 2 DG 2 2 2 DG G B . n B 1 3 DT 3 3 3 DT T B . n B 1 4 DT 4 4 4 DT T B . n B 1 5 DA 5 5 5 DA A B . n B 1 6 DA 6 6 6 DA A B . n B 1 7 DT 7 7 7 DT T B . n B 1 8 DT 8 8 8 DT T B . n B 1 9 DA 9 9 9 DA A B . n B 1 10 DA 10 10 10 DA A B . n B 1 11 DC 11 11 11 DC C B . n B 1 12 DG 12 12 12 DG G B . n C 1 1 DC 1 1 ? ? ? C . n C 1 2 DG 2 2 2 DG G C . n C 1 3 DT 3 3 3 DT T C . n C 1 4 DT 4 4 4 DT T C . n C 1 5 DA 5 5 5 DA A C . n C 1 6 DA 6 6 6 DA A C . n C 1 7 DT 7 7 7 DT T C . n C 1 8 DT 8 8 8 DT T C . n C 1 9 DA 9 9 9 DA A C . n C 1 10 DA 10 10 10 DA A C . n C 1 11 DC 11 11 11 DC C C . n C 1 12 DG 12 12 12 DG G C . n D 1 1 DC 1 1 ? ? ? D . n D 1 2 DG 2 2 2 DG G D . n D 1 3 DT 3 3 3 DT T D . n D 1 4 DT 4 4 4 DT T D . n D 1 5 DA 5 5 5 DA A D . n D 1 6 DA 6 6 6 DA A D . n D 1 7 DT 7 7 7 DT T D . n D 1 8 DT 8 8 8 DT T D . n D 1 9 DA 9 9 9 DA A D . n D 1 10 DA 10 10 10 DA A D . n D 1 11 DC 11 11 11 DC C D . n D 1 12 DG 12 12 12 DG G D . n E 1 1 DC 1 1 ? ? ? E . n E 1 2 DG 2 2 2 DG G E . n E 1 3 DT 3 3 3 DT T E . n E 1 4 DT 4 4 4 DT T E . n E 1 5 DA 5 5 5 DA A E . n E 1 6 DA 6 6 6 DA A E . n E 1 7 DT 7 7 7 DT T E . n E 1 8 DT 8 8 8 DT T E . n E 1 9 DA 9 9 9 DA A E . n E 1 10 DA 10 10 10 DA A E . n E 1 11 DC 11 11 11 DC C E . n E 1 12 DG 12 12 12 DG G E . n F 1 1 DC 1 1 ? ? ? F . n F 1 2 DG 2 2 2 DG G F . n F 1 3 DT 3 3 3 DT T F . n F 1 4 DT 4 4 4 DT T F . n F 1 5 DA 5 5 5 DA A F . n F 1 6 DA 6 6 6 DA A F . n F 1 7 DT 7 7 7 DT T F . n F 1 8 DT 8 8 8 DT T F . n F 1 9 DA 9 9 9 DA A F . n F 1 10 DA 10 10 10 DA A F . n F 1 11 DC 11 11 11 DC C F . n F 1 12 DG 12 12 12 DG G F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MN 1 39 39 MN MN A . H 2 MN 1 35 35 MN MN B . I 2 MN 1 36 36 MN MN C . J 2 MN 1 41 41 MN MN C . K 2 MN 1 38 38 MN MN D . L 2 MN 1 37 37 MN MN F . M 2 MN 1 40 40 MN MN F . N 3 HOH 1 14 14 HOH HOH A . O 3 HOH 1 36 2 HOH HOH B . O 3 HOH 2 37 4 HOH HOH B . O 3 HOH 3 38 6 HOH HOH B . O 3 HOH 4 39 9 HOH HOH B . O 3 HOH 5 40 11 HOH HOH B . O 3 HOH 6 42 19 HOH HOH B . O 3 HOH 7 43 21 HOH HOH B . O 3 HOH 8 44 23 HOH HOH B . O 3 HOH 9 46 29 HOH HOH B . O 3 HOH 10 47 34 HOH HOH B . P 3 HOH 1 42 5 HOH HOH C . P 3 HOH 2 43 12 HOH HOH C . P 3 HOH 3 44 15 HOH HOH C . P 3 HOH 4 45 27 HOH HOH C . P 3 HOH 5 46 30 HOH HOH C . Q 3 HOH 1 39 1 HOH HOH D . Q 3 HOH 2 40 7 HOH HOH D . Q 3 HOH 3 41 13 HOH HOH D . Q 3 HOH 4 42 17 HOH HOH D . Q 3 HOH 5 43 22 HOH HOH D . Q 3 HOH 6 44 24 HOH HOH D . R 3 HOH 1 13 8 HOH HOH E . R 3 HOH 2 14 16 HOH HOH E . R 3 HOH 3 46 32 HOH HOH E . S 3 HOH 1 41 20 HOH HOH F . S 3 HOH 2 42 18 HOH HOH F . S 3 HOH 3 43 28 HOH HOH F . S 3 HOH 4 44 3 HOH HOH F . S 3 HOH 5 45 10 HOH HOH F . S 3 HOH 6 46 25 HOH HOH F . S 3 HOH 7 47 26 HOH HOH F . S 3 HOH 8 48 31 HOH HOH F . S 3 HOH 9 49 33 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H,N,O 2 1 C,D,I,J,K,P,Q 3 1 E,F,L,M,R,S # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 950 ? 1 MORE -3 ? 1 'SSA (A^2)' 4310 ? 2 'ABSA (A^2)' 960 ? 2 MORE -3 ? 2 'SSA (A^2)' 4350 ? 3 'ABSA (A^2)' 1140 ? 3 MORE -9 ? 3 'SSA (A^2)' 4580 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? O HOH . ? B HOH 36 ? 1_555 MN ? H MN . ? B MN 35 ? 1_555 O ? O HOH . ? B HOH 38 ? 1_555 81.7 ? 2 OP1 ? F DG 12 ? F DG 12 ? 1_555 MN ? M MN . ? F MN 40 ? 1_555 O ? S HOH . ? F HOH 41 ? 1_555 68.2 ? 3 O ? S HOH . ? F HOH 44 ? 1_555 MN ? L MN . ? F MN 37 ? 1_555 O ? S HOH . ? F HOH 45 ? 1_555 73.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.value' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.4.0069 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N7 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 2 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 14 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P E DG 2 ? ? "O5'" E DG 2 ? ? 1.532 1.593 -0.061 0.010 N 2 1 "C4'" F DG 2 ? ? "C3'" F DG 2 ? ? 1.457 1.521 -0.064 0.010 N 3 1 "O3'" F DG 2 ? ? "C3'" F DG 2 ? ? 1.337 1.419 -0.082 0.006 N 4 1 "O3'" F DG 2 ? ? P F DT 3 ? ? 1.473 1.607 -0.134 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.29 108.30 2.99 0.30 N 2 1 "O4'" E DC 11 ? ? "C1'" E DC 11 ? ? N1 E DC 11 ? ? 110.18 108.30 1.88 0.30 N 3 1 "C5'" F DG 2 ? ? "C4'" F DG 2 ? ? "C3'" F DG 2 ? ? 102.31 114.10 -11.79 1.80 N 4 1 "C3'" F DG 2 ? ? "O3'" F DG 2 ? ? P F DT 3 ? ? 105.38 119.70 -14.32 1.20 Y # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DC 1 ? A DC 1 2 1 Y 1 B DC 1 ? B DC 1 3 1 Y 1 C DC 1 ? C DC 1 4 1 Y 1 D DC 1 ? D DC 1 5 1 Y 1 E DC 1 ? E DC 1 6 1 Y 1 F DC 1 ? F DC 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MN MN MN N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 3EIL _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 11 1_555 -0.345 -0.126 0.077 -11.236 6.247 -2.355 1 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B DA 10 1_555 0.033 -0.138 0.177 -2.907 -6.150 -1.203 2 A_DT3:DA10_B A 3 ? B 10 ? 20 1 1 A DT 4 1_555 B DA 9 1_555 -0.307 0.038 -0.211 13.127 -12.105 0.034 3 A_DT4:DA9_B A 4 ? B 9 ? 20 1 1 A DA 5 1_555 B DT 8 1_555 0.131 -0.031 0.119 -4.080 -13.179 3.305 4 A_DA5:DT8_B A 5 ? B 8 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.203 -0.058 0.030 2.307 -16.387 6.141 5 A_DA6:DT7_B A 6 ? B 7 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.210 -0.011 0.010 -4.013 -16.994 5.417 6 A_DT7:DA6_B A 7 ? B 6 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.296 -0.017 0.260 2.140 -15.202 5.367 7 A_DT8:DA5_B A 8 ? B 5 ? 20 1 1 A DA 9 1_555 B DT 4 1_555 0.570 0.019 -0.369 -18.007 -14.602 0.289 8 A_DA9:DT4_B A 9 ? B 4 ? 20 1 1 A DA 10 1_555 B DT 3 1_555 -0.020 -0.231 0.387 -2.321 -5.184 -1.149 9 A_DA10:DT3_B A 10 ? B 3 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 0.657 -0.063 -0.085 9.729 5.400 1.415 10 A_DC11:DG2_B A 11 ? B 2 ? 19 1 1 C DG 2 1_555 D DC 11 1_555 -0.107 0.154 -0.055 -7.093 6.945 3.938 11 C_DG2:DC11_D C 2 ? D 11 ? 19 1 1 C DT 3 1_555 D DA 10 1_555 0.145 -0.172 0.153 -1.032 -9.875 1.308 12 C_DT3:DA10_D C 3 ? D 10 ? 20 1 1 C DT 4 1_555 D DA 9 1_555 -0.772 0.101 0.027 9.808 -13.077 3.887 13 C_DT4:DA9_D C 4 ? D 9 ? 20 1 1 C DA 5 1_555 D DT 8 1_555 -0.165 -0.074 -0.038 -3.286 -12.400 6.043 14 C_DA5:DT8_D C 5 ? D 8 ? 20 1 1 C DA 6 1_555 D DT 7 1_555 0.304 0.037 0.007 2.432 -13.862 3.050 15 C_DA6:DT7_D C 6 ? D 7 ? 20 1 1 C DT 7 1_555 D DA 6 1_555 -0.369 0.063 -0.253 3.420 -18.320 1.416 16 C_DT7:DA6_D C 7 ? D 6 ? 20 1 1 C DT 8 1_555 D DA 5 1_555 -0.329 -0.062 0.083 2.736 -13.651 4.649 17 C_DT8:DA5_D C 8 ? D 5 ? 20 1 1 C DA 9 1_555 D DT 4 1_555 0.015 0.052 -0.137 -15.353 -15.011 2.582 18 C_DA9:DT4_D C 9 ? D 4 ? 20 1 1 C DA 10 1_555 D DT 3 1_555 -0.288 -0.121 0.180 0.365 -6.452 1.162 19 C_DA10:DT3_D C 10 ? D 3 ? 20 1 1 C DC 11 1_555 D DG 2 1_555 0.304 -0.079 -0.179 12.936 1.616 -0.960 20 C_DC11:DG2_D C 11 ? D 2 ? 19 1 1 E DG 2 1_555 F DC 11 1_555 -0.033 -0.056 -0.041 -5.984 5.935 0.981 21 E_DG2:DC11_F E 2 ? F 11 ? 19 1 1 E DT 3 1_555 F DA 10 1_555 0.318 -0.232 0.159 -1.675 -10.109 1.231 22 E_DT3:DA10_F E 3 ? F 10 ? 20 1 1 E DT 4 1_555 F DA 9 1_555 -0.486 0.065 -0.211 12.390 -13.685 0.692 23 E_DT4:DA9_F E 4 ? F 9 ? 20 1 1 E DA 5 1_555 F DT 8 1_555 -0.041 -0.027 0.113 -2.706 -13.634 6.647 24 E_DA5:DT8_F E 5 ? F 8 ? 20 1 1 E DA 6 1_555 F DT 7 1_555 0.339 -0.066 -0.027 1.043 -14.825 1.858 25 E_DA6:DT7_F E 6 ? F 7 ? 20 1 1 E DT 7 1_555 F DA 6 1_555 -0.097 0.004 -0.115 0.713 -16.661 1.874 26 E_DT7:DA6_F E 7 ? F 6 ? 20 1 1 E DT 8 1_555 F DA 5 1_555 -0.057 -0.075 0.323 2.286 -15.224 5.973 27 E_DT8:DA5_F E 8 ? F 5 ? 20 1 1 E DA 9 1_555 F DT 4 1_555 0.145 -0.019 -0.264 -14.645 -17.094 1.276 28 E_DA9:DT4_F E 9 ? F 4 ? 20 1 1 E DA 10 1_555 F DT 3 1_555 -0.407 -0.152 0.083 -1.757 -6.654 5.264 29 E_DA10:DT3_F E 10 ? F 3 ? 20 1 1 E DC 11 1_555 F DG 2 1_555 0.553 -0.055 -0.294 13.760 -0.334 3.134 30 E_DC11:DG2_F E 11 ? F 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 11 1_555 A DT 3 1_555 B DA 10 1_555 -0.150 -0.224 3.213 -1.259 5.411 30.601 -1.432 0.044 3.132 10.148 2.361 31.089 1 AA_DG2DT3:DA10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B DA 10 1_555 A DT 4 1_555 B DA 9 1_555 -0.196 -0.499 2.892 2.004 -6.845 29.621 0.281 0.733 2.912 -13.150 -3.850 30.449 2 AA_DT3DT4:DA9DA10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DT 4 1_555 B DA 9 1_555 A DA 5 1_555 B DT 8 1_555 0.003 -0.080 3.593 -4.200 -1.423 46.529 0.029 -0.389 3.580 -1.796 5.303 46.728 3 AA_DT4DA5:DT8DA9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.048 -0.333 3.180 1.279 -5.209 32.938 0.269 0.124 3.193 -9.111 -2.237 33.360 4 AA_DA5DA6:DT7DT8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.037 -0.885 3.329 0.337 0.426 32.292 -1.668 0.127 3.317 0.765 -0.605 32.296 5 AA_DA6DT7:DA6DT7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.112 -0.186 3.177 -2.074 -5.241 32.926 0.523 -0.529 3.155 -9.162 3.626 33.392 6 AA_DT7DT8:DA5DA6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DT 8 1_555 B DA 5 1_555 A DA 9 1_555 B DT 4 1_555 -0.139 -0.011 3.711 5.664 -0.301 48.729 0.013 0.652 3.674 -0.364 -6.838 49.038 7 AA_DT8DA9:DT4DA5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A DA 9 1_555 B DT 4 1_555 A DA 10 1_555 B DT 3 1_555 0.227 -0.555 2.893 -5.684 -6.251 29.331 0.060 -1.447 2.855 -12.034 10.941 30.498 8 AA_DA9DA10:DT3DT4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A DA 10 1_555 B DT 3 1_555 A DC 11 1_555 B DG 2 1_555 0.157 -0.076 3.100 4.159 3.164 30.966 -0.704 0.452 3.072 5.874 -7.720 31.393 9 AA_DA10DC11:DG2DT3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 C DG 2 1_555 D DC 11 1_555 C DT 3 1_555 D DA 10 1_555 -0.237 0.076 3.201 -2.488 6.838 29.321 -1.223 -0.044 3.146 13.253 4.822 30.191 10 CC_DG2DT3:DA10DC11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C DT 3 1_555 D DA 10 1_555 C DT 4 1_555 D DA 9 1_555 -0.107 -0.407 3.098 0.540 -6.651 27.411 0.657 0.342 3.106 -13.779 -1.118 28.197 11 CC_DT3DT4:DA9DA10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C DT 4 1_555 D DA 9 1_555 C DA 5 1_555 D DT 8 1_555 -0.049 0.172 3.529 -2.220 -2.631 45.577 0.469 -0.145 3.513 -3.391 2.861 45.700 12 CC_DT4DA5:DT8DA9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 C DA 5 1_555 D DT 8 1_555 C DA 6 1_555 D DT 7 1_555 -0.204 -0.309 3.204 -0.674 -5.943 37.061 0.287 0.231 3.216 -9.276 1.051 37.524 13 CC_DA5DA6:DT7DT8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C DA 6 1_555 D DT 7 1_555 C DT 7 1_555 D DA 6 1_555 -0.095 -0.805 3.155 1.476 -2.524 29.861 -1.048 0.480 3.202 -4.884 -2.856 30.000 14 CC_DA6DT7:DA6DT7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C DT 7 1_555 D DA 6 1_555 C DT 8 1_555 D DA 5 1_555 0.368 -0.388 3.312 -1.872 -3.005 34.428 -0.182 -0.911 3.309 -5.060 3.152 34.604 15 CC_DT7DT8:DA5DA6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 C DT 8 1_555 D DA 5 1_555 C DA 9 1_555 D DT 4 1_555 0.245 0.090 3.621 4.010 -0.706 47.071 0.176 0.057 3.627 -0.882 -5.011 47.237 16 CC_DT8DA9:DT4DA5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 C DA 9 1_555 D DT 4 1_555 C DA 10 1_555 D DT 3 1_555 0.260 -0.488 2.962 -3.394 -5.522 29.678 0.083 -1.121 2.956 -10.622 6.528 30.362 17 CC_DA9DA10:DT3DT4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 C DA 10 1_555 D DT 3 1_555 C DC 11 1_555 D DG 2 1_555 -0.034 0.001 3.094 3.294 2.996 30.141 -0.564 0.687 3.059 5.722 -6.291 30.461 18 CC_DA10DC11:DG2DT3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 E DG 2 1_555 F DC 11 1_555 E DT 3 1_555 F DA 10 1_555 -0.166 0.057 3.270 -2.156 6.383 30.734 -1.094 -0.098 3.220 11.864 4.008 31.447 19 EE_DG2DT3:DA10DC11_FF E 2 ? F 11 ? E 3 ? F 10 ? 1 E DT 3 1_555 F DA 10 1_555 E DT 4 1_555 F DA 9 1_555 -0.288 -0.481 2.993 1.928 -4.614 28.586 -0.020 0.967 3.006 -9.255 -3.867 29.011 20 EE_DT3DT4:DA9DA10_FF E 3 ? F 10 ? E 4 ? F 9 ? 1 E DT 4 1_555 F DA 9 1_555 E DA 5 1_555 F DT 8 1_555 0.146 0.140 3.607 -3.809 -3.156 44.360 0.502 -0.576 3.566 -4.164 5.026 44.621 21 EE_DT4DA5:DT8DA9_FF E 4 ? F 9 ? E 5 ? F 8 ? 1 E DA 5 1_555 F DT 8 1_555 E DA 6 1_555 F DT 7 1_555 -0.216 -0.402 3.206 0.981 -5.753 36.288 0.139 0.475 3.223 -9.163 -1.562 36.738 22 EE_DA5DA6:DT7DT8_FF E 5 ? F 8 ? E 6 ? F 7 ? 1 E DA 6 1_555 F DT 7 1_555 E DT 7 1_555 F DA 6 1_555 -0.084 -0.768 3.199 0.592 -1.363 31.434 -1.165 0.264 3.227 -2.515 -1.092 31.468 23 EE_DA6DT7:DA6DT7_FF E 6 ? F 7 ? E 7 ? F 6 ? 1 E DT 7 1_555 F DA 6 1_555 E DT 8 1_555 F DA 5 1_555 0.334 -0.359 3.254 -2.960 -4.475 34.302 0.082 -1.012 3.234 -7.530 4.981 34.706 24 EE_DT7DT8:DA5DA6_FF E 7 ? F 6 ? E 8 ? F 5 ? 1 E DT 8 1_555 F DA 5 1_555 E DA 9 1_555 F DT 4 1_555 0.048 0.025 3.625 5.722 -0.439 45.894 0.074 0.479 3.605 -0.561 -7.304 46.232 25 EE_DT8DA9:DT4DA5_FF E 8 ? F 5 ? E 9 ? F 4 ? 1 E DA 9 1_555 F DT 4 1_555 E DA 10 1_555 F DT 3 1_555 0.451 -0.353 2.977 -3.686 -4.026 29.411 0.075 -1.569 2.921 -7.843 7.181 29.903 26 EE_DA9DA10:DT3DT4_FF E 9 ? F 4 ? E 10 ? F 3 ? 1 E DA 10 1_555 F DT 3 1_555 E DC 11 1_555 F DG 2 1_555 -0.365 -0.153 2.971 3.330 2.890 28.674 -0.878 1.388 2.882 5.791 -6.673 29.004 27 EE_DA10DC11:DG2DT3_FF E 10 ? F 3 ? E 11 ? F 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 463D _pdbx_initial_refinement_model.details 'PDB entry 463d' #