HEADER CYTOKINE/SIGNALING PROTEIN 18-SEP-08 3EJJ TITLE STRUCTURE OF M-CSF BOUND TO THE FIRST THREE DOMAINS OF FMS CAVEAT 3EJJ NAG C 2 HAS WRONG CHIRALITY AT ATOM C1 NAG D 1 HAS WRONG CAVEAT 2 3EJJ CHIRALITY AT ATOM C1 NAG D 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLONY STIMULATING FACTOR-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: M-CSF (UNP RESIDUES 36 TO 180); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR; COMPND 8 CHAIN: X; COMPND 9 FRAGMENT: C-FMS (UNP RESIDUES 20 TO 298); COMPND 10 SYNONYM: CSF-1-R, FMS PROTO-ONCOGENE, C-FMS; COMPND 11 EC: 2.7.10.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CSF1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACGP67A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: CSF1R, CSFMR, FMS; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PACGP67A KEYWDS GROWTH FACTOR-RECEPTOR COMPLEX, RECEPTOR TYROSINE KINASE, CYTOKINE, KEYWDS 2 4-HELIX BUNDLE, ATP-BINDING, GLYCOPROTEIN, IMMUNOGLOBULIN DOMAIN, KEYWDS 3 KINASE, MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTO- KEYWDS 4 ONCOGENE, RECEPTOR, TRANSFERASE, TRANSMEMBRANE, TYROSINE-PROTEIN KEYWDS 5 KINASE, CYTOKINE-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.CHEN,H.LIU,P.J.FOCIA,A.SHIM,X.HE REVDAT 5 20-NOV-24 3EJJ 1 REMARK REVDAT 4 30-AUG-23 3EJJ 1 HETSYN REVDAT 3 29-JUL-20 3EJJ 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM LINK SITE ATOM REVDAT 2 13-JUL-11 3EJJ 1 VERSN REVDAT 1 09-DEC-08 3EJJ 0 JRNL AUTH X.CHEN,H.LIU,P.J.FOCIA,A.H.SHIM,X.HE JRNL TITL STRUCTURE OF MACROPHAGE COLONY STIMULATING FACTOR BOUND TO JRNL TITL 2 FMS: DIVERSE SIGNALING ASSEMBLIES OF CLASS III RECEPTOR JRNL TITL 3 TYROSINE KINASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 18267 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 19017797 JRNL DOI 10.1073/PNAS.0807762105 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 5.0 REMARK 3 NUMBER OF REFLECTIONS : 44786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2247 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 363 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 654 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.31000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : -5.31000 REMARK 3 B13 (A**2) : 10.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.58 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3EJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9766 REMARK 200 MONOCHROMATOR : NA REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44786 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HMC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3000, 0.1M HEPES, PH 7.3, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 79.42400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.85547 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 79.31767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 79.42400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.85547 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 79.31767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 79.42400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.85547 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.31767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 79.42400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 45.85547 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.31767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 79.42400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 45.85547 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.31767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 79.42400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 45.85547 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.31767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.71094 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 158.63533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 91.71094 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 158.63533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 91.71094 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 158.63533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 91.71094 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 158.63533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 91.71094 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 158.63533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 91.71094 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 158.63533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 ALA B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 ALA X 17 REMARK 465 ASP X 18 REMARK 465 PRO X 19 REMARK 465 ASP X 89 REMARK 465 PRO X 90 REMARK 465 MET X 91 REMARK 465 ALA X 92 REMARK 465 GLY X 93 REMARK 465 GLU X 297 REMARK 465 SER X 298 REMARK 465 HIS X 299 REMARK 465 HIS X 300 REMARK 465 HIS X 301 REMARK 465 HIS X 302 REMARK 465 HIS X 303 REMARK 465 HIS X 304 REMARK 465 HIS X 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 90 CA - CB - SG ANGL. DEV. = -15.4 DEGREES REMARK 500 PRO X 25 N - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 VAL X 213 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 ARG X 214 N - CA - C ANGL. DEV. = -21.8 DEGREES REMARK 500 GLU X 218 N - CA - C ANGL. DEV. = 21.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 -0.90 -52.17 REMARK 500 CYS A 31 -156.70 -109.61 REMARK 500 GLN A 32 112.14 176.70 REMARK 500 ASP A 94 -169.11 -120.45 REMARK 500 GLU A 96 123.53 179.33 REMARK 500 HIS B 9 61.02 -105.01 REMARK 500 MET B 10 -80.42 -94.19 REMARK 500 MET B 65 66.36 -65.32 REMARK 500 ASN B 86 4.73 -67.90 REMARK 500 SER B 89 34.93 -72.56 REMARK 500 CYS B 90 -2.45 -163.58 REMARK 500 LYS B 93 153.79 -49.19 REMARK 500 GLU B 96 36.67 -94.15 REMARK 500 LYS B 100 25.12 -74.74 REMARK 500 CYS B 102 -4.15 73.48 REMARK 500 GLN B 112 -79.08 -54.79 REMARK 500 LEU B 113 -60.06 -24.30 REMARK 500 ASN B 122 -64.92 -91.16 REMARK 500 ASP B 131 120.00 -169.08 REMARK 500 PHE B 135 -2.13 74.68 REMARK 500 PRO X 53 48.80 -79.20 REMARK 500 SER X 55 133.46 151.60 REMARK 500 PRO X 56 58.44 -104.09 REMARK 500 ASP X 61 74.76 -171.79 REMARK 500 GLU X 63 -140.43 -114.56 REMARK 500 PRO X 65 2.82 -69.49 REMARK 500 GLU X 86 100.44 -57.67 REMARK 500 LYS X 102 88.93 -53.60 REMARK 500 GLU X 119 151.21 -41.63 REMARK 500 PRO X 126 53.01 -51.36 REMARK 500 LYS X 135 -34.78 -32.42 REMARK 500 ASN X 173 -172.56 -177.87 REMARK 500 ASN X 182 76.30 49.76 REMARK 500 ARG X 214 68.37 -156.42 REMARK 500 GLU X 218 -123.93 -116.99 REMARK 500 GLN X 253 -82.70 -118.39 REMARK 500 ASN X 255 36.21 -143.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 3EJJ A 4 148 UNP Q3U395 Q3U395_MOUSE 36 180 DBREF 3EJJ B 4 148 UNP Q3U395 Q3U395_MOUSE 36 180 DBREF 3EJJ X 20 296 UNP P09581 CSF1R_MOUSE 20 296 SEQADV 3EJJ ALA A 1 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ ASP A 2 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ PRO A 3 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS A 149 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS A 150 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS A 151 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS A 152 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS A 153 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS A 154 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS A 155 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ ALA B 1 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ ASP B 2 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ PRO B 3 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS B 149 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS B 150 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS B 151 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS B 152 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS B 153 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS B 154 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ HIS B 155 UNP Q3U395 EXPRESSION TAG SEQADV 3EJJ ALA X 17 UNP P09581 EXPRESSION TAG SEQADV 3EJJ ASP X 18 UNP P09581 EXPRESSION TAG SEQADV 3EJJ PRO X 19 UNP P09581 EXPRESSION TAG SEQADV 3EJJ GLU X 297 UNP P09581 EXPRESSION TAG SEQADV 3EJJ SER X 298 UNP P09581 EXPRESSION TAG SEQADV 3EJJ HIS X 299 UNP P09581 EXPRESSION TAG SEQADV 3EJJ HIS X 300 UNP P09581 EXPRESSION TAG SEQADV 3EJJ HIS X 301 UNP P09581 EXPRESSION TAG SEQADV 3EJJ HIS X 302 UNP P09581 EXPRESSION TAG SEQADV 3EJJ HIS X 303 UNP P09581 EXPRESSION TAG SEQADV 3EJJ HIS X 304 UNP P09581 EXPRESSION TAG SEQADV 3EJJ HIS X 305 UNP P09581 EXPRESSION TAG SEQRES 1 A 155 ALA ASP PRO SER GLU HIS CYS SER HIS MET ILE GLY ASN SEQRES 2 A 155 GLY HIS LEU LYS VAL LEU GLN GLN LEU ILE ASP SER GLN SEQRES 3 A 155 MET GLU THR SER CYS GLN ILE ALA PHE GLU PHE VAL ASP SEQRES 4 A 155 GLN GLU GLN LEU ASP ASP PRO VAL CYS TYR LEU LYS LYS SEQRES 5 A 155 ALA PHE PHE LEU VAL GLN ASP ILE ILE ASP GLU THR MET SEQRES 6 A 155 ARG PHE LYS ASP ASN THR PRO ASN ALA ASN ALA THR GLU SEQRES 7 A 155 ARG LEU GLN GLU LEU SER ASN ASN LEU ASN SER CYS PHE SEQRES 8 A 155 THR LYS ASP TYR GLU GLU GLN ASN LYS ALA CYS VAL ARG SEQRES 9 A 155 THR PHE HIS GLU THR PRO LEU GLN LEU LEU GLU LYS ILE SEQRES 10 A 155 LYS ASN PHE PHE ASN GLU THR LYS ASN LEU LEU GLU LYS SEQRES 11 A 155 ASP TRP ASN ILE PHE THR LYS ASN CYS ASN ASN SER PHE SEQRES 12 A 155 ALA LYS CYS SER SER HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 155 ALA ASP PRO SER GLU HIS CYS SER HIS MET ILE GLY ASN SEQRES 2 B 155 GLY HIS LEU LYS VAL LEU GLN GLN LEU ILE ASP SER GLN SEQRES 3 B 155 MET GLU THR SER CYS GLN ILE ALA PHE GLU PHE VAL ASP SEQRES 4 B 155 GLN GLU GLN LEU ASP ASP PRO VAL CYS TYR LEU LYS LYS SEQRES 5 B 155 ALA PHE PHE LEU VAL GLN ASP ILE ILE ASP GLU THR MET SEQRES 6 B 155 ARG PHE LYS ASP ASN THR PRO ASN ALA ASN ALA THR GLU SEQRES 7 B 155 ARG LEU GLN GLU LEU SER ASN ASN LEU ASN SER CYS PHE SEQRES 8 B 155 THR LYS ASP TYR GLU GLU GLN ASN LYS ALA CYS VAL ARG SEQRES 9 B 155 THR PHE HIS GLU THR PRO LEU GLN LEU LEU GLU LYS ILE SEQRES 10 B 155 LYS ASN PHE PHE ASN GLU THR LYS ASN LEU LEU GLU LYS SEQRES 11 B 155 ASP TRP ASN ILE PHE THR LYS ASN CYS ASN ASN SER PHE SEQRES 12 B 155 ALA LYS CYS SER SER HIS HIS HIS HIS HIS HIS HIS SEQRES 1 X 289 ALA ASP PRO ALA PRO VAL ILE GLU PRO SER GLY PRO GLU SEQRES 2 X 289 LEU VAL VAL GLU PRO GLY GLU THR VAL THR LEU ARG CYS SEQRES 3 X 289 VAL SER ASN GLY SER VAL GLU TRP ASP GLY PRO ILE SER SEQRES 4 X 289 PRO TYR TRP THR LEU ASP PRO GLU SER PRO GLY SER THR SEQRES 5 X 289 LEU THR THR ARG ASN ALA THR PHE LYS ASN THR GLY THR SEQRES 6 X 289 TYR ARG CYS THR GLU LEU GLU ASP PRO MET ALA GLY SER SEQRES 7 X 289 THR THR ILE HIS LEU TYR VAL LYS ASP PRO ALA HIS SER SEQRES 8 X 289 TRP ASN LEU LEU ALA GLN GLU VAL THR VAL VAL GLU GLY SEQRES 9 X 289 GLN GLU ALA VAL LEU PRO CYS LEU ILE THR ASP PRO ALA SEQRES 10 X 289 LEU LYS ASP SER VAL SER LEU MET ARG GLU GLY GLY ARG SEQRES 11 X 289 GLN VAL LEU ARG LYS THR VAL TYR PHE PHE SER PRO TRP SEQRES 12 X 289 ARG GLY PHE ILE ILE ARG LYS ALA LYS VAL LEU ASP SER SEQRES 13 X 289 ASN THR TYR VAL CYS LYS THR MET VAL ASN GLY ARG GLU SEQRES 14 X 289 SER THR SER THR GLY ILE TRP LEU LYS VAL ASN ARG VAL SEQRES 15 X 289 HIS PRO GLU PRO PRO GLN ILE LYS LEU GLU PRO SER LYS SEQRES 16 X 289 LEU VAL ARG ILE ARG GLY GLU ALA ALA GLN ILE VAL CYS SEQRES 17 X 289 SER ALA THR ASN ALA GLU VAL GLY PHE ASN VAL ILE LEU SEQRES 18 X 289 LYS ARG GLY ASP THR LYS LEU GLU ILE PRO LEU ASN SER SEQRES 19 X 289 ASP PHE GLN ASP ASN TYR TYR LYS LYS VAL ARG ALA LEU SEQRES 20 X 289 SER LEU ASN ALA VAL ASP PHE GLN ASP ALA GLY ILE TYR SEQRES 21 X 289 SER CYS VAL ALA SER ASN ASP VAL GLY THR ARG THR ALA SEQRES 22 X 289 THR MET ASN PHE GLN VAL VAL GLU SER HIS HIS HIS HIS SEQRES 23 X 289 HIS HIS HIS MODRES 3EJJ ASN X 45 ASN GLYCOSYLATION SITE MODRES 3EJJ ASN X 73 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 6 HOH *654(H2 O) HELIX 1 1 SER A 4 MET A 10 5 7 HELIX 2 2 GLY A 12 ASP A 24 1 13 HELIX 3 3 ASP A 45 THR A 64 1 20 HELIX 4 4 THR A 71 LEU A 87 1 17 HELIX 5 5 ASN A 88 PHE A 91 5 4 HELIX 6 6 THR A 109 ASP A 131 1 23 HELIX 7 7 CYS A 139 CYS A 146 1 8 HELIX 8 8 GLU B 5 MET B 10 5 6 HELIX 9 9 HIS B 15 SER B 25 1 11 HELIX 10 10 GLN B 40 LEU B 43 5 4 HELIX 11 11 ASP B 45 THR B 64 1 20 HELIX 12 12 THR B 71 ASN B 86 1 16 HELIX 13 13 THR B 109 ASP B 131 1 23 HELIX 14 14 CYS B 139 CYS B 146 1 8 HELIX 15 15 THR X 75 THR X 79 5 5 HELIX 16 16 ASP X 131 ASP X 136 5 6 HELIX 17 17 LYS X 168 SER X 172 5 5 SHEET 1 A 2 ILE A 33 VAL A 38 0 SHEET 2 A 2 VAL A 103 GLU A 108 -1 O PHE A 106 N PHE A 35 SHEET 1 B 2 ILE B 33 VAL B 38 0 SHEET 2 B 2 VAL B 103 GLU B 108 -1 O PHE B 106 N PHE B 35 SHEET 1 C 4 VAL X 22 GLU X 24 0 SHEET 2 C 4 VAL X 38 VAL X 43 -1 O VAL X 43 N VAL X 22 SHEET 3 C 4 THR X 68 THR X 71 -1 O LEU X 69 N LEU X 40 SHEET 4 C 4 THR X 59 LEU X 60 -1 N THR X 59 O THR X 70 SHEET 1 D 4 GLU X 29 VAL X 32 0 SHEET 2 D 4 THR X 95 VAL X 101 1 O TYR X 100 N LEU X 30 SHEET 3 D 4 GLY X 80 THR X 85 -1 N TYR X 82 O ILE X 97 SHEET 4 D 4 GLU X 49 ASP X 51 -1 N ASP X 51 O ARG X 83 SHEET 1 E 2 TRP X 108 LEU X 110 0 SHEET 2 E 2 CYS X 127 ILE X 129 -1 O LEU X 128 N ASN X 109 SHEET 1 F 5 GLU X 114 VAL X 118 0 SHEET 2 F 5 ILE X 191 ASN X 196 1 O TRP X 192 N VAL X 115 SHEET 3 F 5 ASN X 173 VAL X 181 -1 N ASN X 173 O LEU X 193 SHEET 4 F 5 VAL X 138 ARG X 142 -1 N SER X 139 O LYS X 178 SHEET 5 F 5 ARG X 146 GLN X 147 -1 O ARG X 146 N ARG X 142 SHEET 1 G 4 GLU X 114 VAL X 118 0 SHEET 2 G 4 ILE X 191 ASN X 196 1 O TRP X 192 N VAL X 115 SHEET 3 G 4 ASN X 173 VAL X 181 -1 N ASN X 173 O LEU X 193 SHEET 4 G 4 ARG X 184 THR X 187 -1 O SER X 186 N THR X 179 SHEET 1 H 3 ALA X 123 LEU X 125 0 SHEET 2 H 3 GLY X 161 ILE X 164 -1 O ILE X 164 N ALA X 123 SHEET 3 H 3 TYR X 154 SER X 157 -1 N SER X 157 O GLY X 161 SHEET 1 I 4 GLN X 204 GLU X 208 0 SHEET 2 I 4 ALA X 220 ASN X 228 -1 O VAL X 223 N GLU X 208 SHEET 3 I 4 TYR X 257 LEU X 265 -1 O LEU X 263 N ILE X 222 SHEET 4 I 4 LEU X 248 PHE X 252 -1 N ASP X 251 O LYS X 258 SHEET 1 J 5 LEU X 212 VAL X 213 0 SHEET 2 J 5 THR X 286 GLN X 294 1 O ASN X 292 N LEU X 212 SHEET 3 J 5 GLY X 274 SER X 281 -1 N GLY X 274 O PHE X 293 SHEET 4 J 5 ASN X 234 ARG X 239 -1 N ILE X 236 O VAL X 279 SHEET 5 J 5 THR X 242 LYS X 243 -1 O THR X 242 N ARG X 239 SSBOND 1 CYS A 7 CYS A 90 1555 1555 2.02 SSBOND 2 CYS A 31 CYS B 31 1555 1555 2.00 SSBOND 3 CYS A 48 CYS A 139 1555 1555 2.03 SSBOND 4 CYS A 102 CYS A 146 1555 1555 2.04 SSBOND 5 CYS B 7 CYS B 90 1555 1555 2.03 SSBOND 6 CYS B 48 CYS B 139 1555 1555 2.03 SSBOND 7 CYS B 102 CYS B 146 1555 1555 2.03 SSBOND 8 CYS X 42 CYS X 84 1555 1555 2.03 SSBOND 9 CYS X 127 CYS X 177 1555 1555 2.01 SSBOND 10 CYS X 224 CYS X 278 1555 1555 2.05 LINK ND2 ASN X 45 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN X 73 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 CISPEP 1 GLU X 24 PRO X 25 0 -0.59 CISPEP 2 SER X 55 PRO X 56 0 2.20 CISPEP 3 GLU X 208 PRO X 209 0 -1.25 CRYST1 158.848 158.848 237.953 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006295 0.003635 0.000000 0.00000 SCALE2 0.000000 0.007269 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004203 0.00000