data_3EJK # _entry.id 3EJK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EJK pdb_00003ejk 10.2210/pdb3ejk/pdb RCSB RCSB049402 ? ? WWPDB D_1000049402 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390748 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3EJK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of dTDP Sugar Isomerase (YP_390184.1) from DESULFOVIBRIO DESULFURICANS G20 at 1.95 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3EJK _cell.length_a 81.790 _cell.length_b 86.510 _cell.length_c 51.340 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EJK _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'dTDP Sugar Isomerase' 19319.338 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 3 non-polymer syn 'CITRIC ACID' 192.124 2 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 6 water nat water 18.015 128 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Polysaccharide biosynthesis domain protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)DI(MSE)LNTADISAAAILLPVEGAQLSELRQIPAEGGPVLH(MSE)LRLDSPQFSQFGEIYFSEVLPRRVKAW KRHSL(MSE)TQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANCTDIPH RQGESERAPQDAPFIPFSWAGADLSGTPV(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDIMLNTADISAAAILLPVEGAQLSELRQIPAEGGPVLHMLRLDSPQFSQFGEIYFSEVLPRRVKAWKRHSLMTQLFAV PVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANCTDIPHRQGESERAPQDAPFIP FSWAGADLSGTPVM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 390748 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASP n 1 4 ILE n 1 5 MSE n 1 6 LEU n 1 7 ASN n 1 8 THR n 1 9 ALA n 1 10 ASP n 1 11 ILE n 1 12 SER n 1 13 ALA n 1 14 ALA n 1 15 ALA n 1 16 ILE n 1 17 LEU n 1 18 LEU n 1 19 PRO n 1 20 VAL n 1 21 GLU n 1 22 GLY n 1 23 ALA n 1 24 GLN n 1 25 LEU n 1 26 SER n 1 27 GLU n 1 28 LEU n 1 29 ARG n 1 30 GLN n 1 31 ILE n 1 32 PRO n 1 33 ALA n 1 34 GLU n 1 35 GLY n 1 36 GLY n 1 37 PRO n 1 38 VAL n 1 39 LEU n 1 40 HIS n 1 41 MSE n 1 42 LEU n 1 43 ARG n 1 44 LEU n 1 45 ASP n 1 46 SER n 1 47 PRO n 1 48 GLN n 1 49 PHE n 1 50 SER n 1 51 GLN n 1 52 PHE n 1 53 GLY n 1 54 GLU n 1 55 ILE n 1 56 TYR n 1 57 PHE n 1 58 SER n 1 59 GLU n 1 60 VAL n 1 61 LEU n 1 62 PRO n 1 63 ARG n 1 64 ARG n 1 65 VAL n 1 66 LYS n 1 67 ALA n 1 68 TRP n 1 69 LYS n 1 70 ARG n 1 71 HIS n 1 72 SER n 1 73 LEU n 1 74 MSE n 1 75 THR n 1 76 GLN n 1 77 LEU n 1 78 PHE n 1 79 ALA n 1 80 VAL n 1 81 PRO n 1 82 VAL n 1 83 GLY n 1 84 CYS n 1 85 ILE n 1 86 HIS n 1 87 VAL n 1 88 VAL n 1 89 LEU n 1 90 TYR n 1 91 ASP n 1 92 GLY n 1 93 ARG n 1 94 GLU n 1 95 LYS n 1 96 SER n 1 97 PRO n 1 98 THR n 1 99 SER n 1 100 GLY n 1 101 ARG n 1 102 LEU n 1 103 ALA n 1 104 GLN n 1 105 VAL n 1 106 THR n 1 107 LEU n 1 108 GLY n 1 109 ARG n 1 110 PRO n 1 111 ASP n 1 112 ASN n 1 113 TYR n 1 114 ARG n 1 115 LEU n 1 116 LEU n 1 117 ARG n 1 118 ILE n 1 119 PRO n 1 120 PRO n 1 121 GLN n 1 122 VAL n 1 123 TRP n 1 124 TYR n 1 125 GLY n 1 126 PHE n 1 127 ALA n 1 128 ALA n 1 129 THR n 1 130 GLY n 1 131 ASP n 1 132 THR n 1 133 PRO n 1 134 ALA n 1 135 LEU n 1 136 VAL n 1 137 ALA n 1 138 ASN n 1 139 CYS n 1 140 THR n 1 141 ASP n 1 142 ILE n 1 143 PRO n 1 144 HIS n 1 145 ARG n 1 146 GLN n 1 147 GLY n 1 148 GLU n 1 149 SER n 1 150 GLU n 1 151 ARG n 1 152 ALA n 1 153 PRO n 1 154 GLN n 1 155 ASP n 1 156 ALA n 1 157 PRO n 1 158 PHE n 1 159 ILE n 1 160 PRO n 1 161 PHE n 1 162 SER n 1 163 TRP n 1 164 ALA n 1 165 GLY n 1 166 ALA n 1 167 ASP n 1 168 LEU n 1 169 SER n 1 170 GLY n 1 171 THR n 1 172 PRO n 1 173 VAL n 1 174 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_390184.1, Dde_3696' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfovibrio desulfuricans subsp. desulfuricans str. G20' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 207559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q30V07_DESDG _struct_ref.pdbx_db_accession Q30V07 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDIMLNTADISAAAILLPVEGAQLSELRQIPAEGGPVLHMLRLDSPQFSQFGEIYFSEVLPRRVKAWKRHSLMTQLFAVP VGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANCTDIPHRQGESERAPQDAPFIPF SWAGADLSGTPVM ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EJK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 174 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q30V07 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 173 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 173 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3EJK _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q30V07 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3EJK # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '30.0000% PEG-6000, 0.1M Citrate pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-08-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97911 1.0 3 0.97932 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97911,0.97932 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3EJK _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 29.722 _reflns.number_obs 13593 _reflns.pdbx_Rmerge_I_obs 0.102 _reflns.percent_possible_obs 98.500 _reflns.B_iso_Wilson_estimate 17.509 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.090 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.95 2.02 4784 ? 2516 0.497 1.7 ? ? ? ? ? 96.90 1 1 2.02 2.10 4805 ? 2510 0.385 2.1 ? ? ? ? ? 98.70 2 1 2.10 2.20 5109 ? 2651 0.300 2.8 ? ? ? ? ? 98.70 3 1 2.20 2.31 4600 ? 2389 0.249 3.3 ? ? ? ? ? 98.30 4 1 2.31 2.46 5093 ? 2647 0.194 4.1 ? ? ? ? ? 99.10 5 1 2.46 2.65 4840 ? 2498 0.169 4.8 ? ? ? ? ? 98.80 6 1 2.65 2.91 4820 ? 2490 0.129 6.2 ? ? ? ? ? 98.50 7 1 2.91 3.33 4910 ? 2531 0.072 10.2 ? ? ? ? ? 98.90 8 1 3.33 4.19 4916 ? 2527 0.045 16.1 ? ? ? ? ? 98.30 9 1 4.19 29.722 4998 ? 2563 0.033 19.4 ? ? ? ? ? 98.70 10 1 # _refine.entry_id 3EJK _refine.ls_d_res_high 1.950 _refine.ls_d_res_low 29.722 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.570 _refine.ls_number_reflns_obs 13584 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. CIT, PG4 AND GOL MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTIONS ARE MODELED. 5. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED COVALENTLY ATTACHED TO SG ATOM OF RESIDUE CYSTEINE 83. THIS RESEMBLES CYSTEINE RESIDUE MODIFIED TO THIO METHYLATED CYSTEINE (SCH). ; _refine.ls_R_factor_obs 0.171 _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free 0.217 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 673 _refine.B_iso_mean 27.245 _refine.aniso_B[1][1] 0.660 _refine.aniso_B[2][2] -1.260 _refine.aniso_B[3][3] 0.600 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.pdbx_overall_ESU_R 0.149 _refine.pdbx_overall_ESU_R_Free 0.143 _refine.overall_SU_ML 0.100 _refine.overall_SU_B 6.699 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.B_iso_max 69.02 _refine.B_iso_min 14.83 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1211 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 1386 _refine_hist.d_res_high 1.950 _refine_hist.d_res_low 29.722 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1320 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 910 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1804 1.721 2.001 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2216 1.413 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 166 3.840 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 56 31.085 22.857 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 195 10.366 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 12.499 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 193 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1464 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 264 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 801 0.967 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 316 0.177 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1300 1.842 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 519 3.374 6.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 499 5.025 8.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.951 _refine_ls_shell.d_res_low 2.002 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.000 _refine_ls_shell.number_reflns_R_work 956 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.226 _refine_ls_shell.R_factor_R_free 0.263 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 995 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EJK _struct.title 'Crystal structure of dTDP Sugar Isomerase (YP_390184.1) from DESULFOVIBRIO DESULFURICANS G20 at 1.95 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_390184.1, dTDP Sugar Isomerase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, ISOMERASE ; _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.entry_id 3EJK # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 162 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 166 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 161 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 165 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 40 C ? ? ? 1_555 A MSE 41 N ? ? A HIS 39 A MSE 40 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale2 covale both ? A MSE 41 C ? ? ? 1_555 A LEU 42 N ? ? A MSE 40 A LEU 41 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A LEU 73 C ? ? ? 1_555 A MSE 74 N ? ? A LEU 72 A MSE 73 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MSE 74 C ? ? ? 1_555 A THR 75 N ? ? A MSE 73 A THR 74 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 67 A . ? ALA 66 A TRP 68 A ? TRP 67 A 1 -1.48 2 ARG 109 A . ? ARG 108 A PRO 110 A ? PRO 109 A 1 3.47 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 16 ? LEU A 17 ? ILE A 15 LEU A 16 A 2 GLN A 24 ? GLU A 27 ? GLN A 23 GLU A 26 A 3 ARG A 114 ? ILE A 118 ? ARG A 113 ILE A 117 A 4 GLN A 76 ? VAL A 82 ? GLN A 75 VAL A 81 A 5 ALA A 134 ? THR A 140 ? ALA A 133 THR A 139 A 6 GLU A 54 ? VAL A 60 ? GLU A 53 VAL A 59 B 1 GLN A 30 ? ILE A 31 ? GLN A 29 ILE A 30 B 2 VAL A 38 ? LEU A 39 ? VAL A 37 LEU A 38 C 1 LEU A 102 ? GLY A 108 ? LEU A 101 GLY A 107 C 2 CYS A 84 ? TYR A 90 ? CYS A 83 TYR A 89 C 3 TRP A 123 ? ALA A 128 ? TRP A 122 ALA A 127 C 4 VAL A 65 ? HIS A 71 ? VAL A 64 HIS A 70 C 5 SER A 149 ? ARG A 151 ? SER A 148 ARG A 150 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 16 ? N ILE A 15 O LEU A 25 ? O LEU A 24 A 2 3 N SER A 26 ? N SER A 25 O LEU A 115 ? O LEU A 114 A 3 4 O ILE A 118 ? O ILE A 117 N GLN A 76 ? N GLN A 75 A 4 5 N ALA A 79 ? N ALA A 78 O ALA A 137 ? O ALA A 136 A 5 6 O ALA A 134 ? O ALA A 133 N VAL A 60 ? N VAL A 59 B 1 2 N ILE A 31 ? N ILE A 30 O VAL A 38 ? O VAL A 37 C 1 2 O VAL A 105 ? O VAL A 104 N VAL A 87 ? N VAL A 86 C 2 3 N VAL A 88 ? N VAL A 87 O GLY A 125 ? O GLY A 124 C 3 4 O PHE A 126 ? O PHE A 125 N LYS A 66 ? N LYS A 65 C 4 5 N ARG A 70 ? N ARG A 69 O GLU A 150 ? O GLU A 149 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A UNL 174 ? 4 'BINDING SITE FOR RESIDUE UNL A 174' AC2 Software A CIT 175 ? 14 'BINDING SITE FOR RESIDUE CIT A 175' AC3 Software A CIT 176 ? 11 'BINDING SITE FOR RESIDUE CIT A 176' AC4 Software A PG4 177 ? 4 'BINDING SITE FOR RESIDUE PG4 A 177' AC5 Software A GOL 178 ? 6 'BINDING SITE FOR RESIDUE GOL A 178' AC6 Software A GOL 179 ? 7 'BINDING SITE FOR RESIDUE GOL A 179' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 84 ? CYS A 83 . ? 1_555 ? 2 AC1 4 THR A 106 ? THR A 105 . ? 1_555 ? 3 AC1 4 GLY A 108 ? GLY A 107 . ? 1_555 ? 4 AC1 4 ASN A 112 ? ASN A 111 . ? 1_555 ? 5 AC2 14 VAL A 38 ? VAL A 37 . ? 3_555 ? 6 AC2 14 TYR A 56 ? TYR A 55 . ? 1_555 ? 7 AC2 14 SER A 58 ? SER A 57 . ? 1_555 ? 8 AC2 14 LYS A 66 ? LYS A 65 . ? 1_555 ? 9 AC2 14 LYS A 69 ? LYS A 68 . ? 1_555 ? 10 AC2 14 HIS A 71 ? HIS A 70 . ? 1_555 ? 11 AC2 14 TYR A 124 ? TYR A 123 . ? 1_555 ? 12 AC2 14 PHE A 126 ? PHE A 125 . ? 1_555 ? 13 AC2 14 CIT D . ? CIT A 176 . ? 1_555 ? 14 AC2 14 GOL G . ? GOL A 179 . ? 1_555 ? 15 AC2 14 HOH H . ? HOH A 182 . ? 1_555 ? 16 AC2 14 HOH H . ? HOH A 205 . ? 1_555 ? 17 AC2 14 HOH H . ? HOH A 289 . ? 3_555 ? 18 AC2 14 HOH H . ? HOH A 307 . ? 1_555 ? 19 AC3 11 ALA A 33 ? ALA A 32 . ? 3_555 ? 20 AC3 11 GLU A 34 ? GLU A 33 . ? 3_555 ? 21 AC3 11 LYS A 66 ? LYS A 65 . ? 1_555 ? 22 AC3 11 ALA A 67 ? ALA A 66 . ? 1_555 ? 23 AC3 11 TRP A 68 ? TRP A 67 . ? 1_555 ? 24 AC3 11 LYS A 69 ? LYS A 68 . ? 1_555 ? 25 AC3 11 ARG A 151 ? ARG A 150 . ? 1_555 ? 26 AC3 11 CIT C . ? CIT A 175 . ? 1_555 ? 27 AC3 11 HOH H . ? HOH A 205 . ? 1_555 ? 28 AC3 11 HOH H . ? HOH A 241 . ? 1_555 ? 29 AC3 11 HOH H . ? HOH A 290 . ? 3_555 ? 30 AC4 4 ALA A 15 ? ALA A 14 . ? 3_554 ? 31 AC4 4 ILE A 16 ? ILE A 15 . ? 1_555 ? 32 AC4 4 LEU A 17 ? LEU A 16 . ? 3_554 ? 33 AC4 4 HOH H . ? HOH A 305 . ? 3_554 ? 34 AC5 6 PHE A 49 ? PHE A 48 . ? 1_555 ? 35 AC5 6 GLN A 51 ? GLN A 50 . ? 1_555 ? 36 AC5 6 PHE A 52 ? PHE A 51 . ? 1_555 ? 37 AC5 6 HOH H . ? HOH A 202 . ? 3_555 ? 38 AC5 6 HOH H . ? HOH A 303 . ? 3_555 ? 39 AC5 6 HOH H . ? HOH A 305 . ? 2_555 ? 40 AC6 7 VAL A 38 ? VAL A 37 . ? 3_555 ? 41 AC6 7 HIS A 40 ? HIS A 39 . ? 3_555 ? 42 AC6 7 GLU A 54 ? GLU A 53 . ? 1_555 ? 43 AC6 7 TYR A 56 ? TYR A 55 . ? 1_555 ? 44 AC6 7 HIS A 144 ? HIS A 143 . ? 1_555 ? 45 AC6 7 CIT C . ? CIT A 175 . ? 1_555 ? 46 AC6 7 HOH H . ? HOH A 236 . ? 3_555 ? # _atom_sites.entry_id 3EJK _atom_sites.fract_transf_matrix[1][1] 0.012226 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011559 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019478 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ASP 3 2 ? ? ? A . n A 1 4 ILE 4 3 ? ? ? A . n A 1 5 MSE 5 4 ? ? ? A . n A 1 6 LEU 6 5 ? ? ? A . n A 1 7 ASN 7 6 ? ? ? A . n A 1 8 THR 8 7 ? ? ? A . n A 1 9 ALA 9 8 ? ? ? A . n A 1 10 ASP 10 9 ? ? ? A . n A 1 11 ILE 11 10 ? ? ? A . n A 1 12 SER 12 11 ? ? ? A . n A 1 13 ALA 13 12 ? ? ? A . n A 1 14 ALA 14 13 ? ? ? A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 ILE 16 15 15 ILE ILE A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 LEU 18 17 17 LEU LEU A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 GLN 24 23 23 GLN GLN A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 ARG 29 28 28 ARG ARG A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 PRO 32 31 31 PRO PRO A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 GLU 34 33 33 GLU GLU A . n A 1 35 GLY 35 34 34 GLY GLY A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 HIS 40 39 39 HIS HIS A . n A 1 41 MSE 41 40 40 MSE MSE A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 ARG 43 42 42 ARG ARG A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 ASP 45 44 44 ASP ASP A . n A 1 46 SER 46 45 45 SER SER A . n A 1 47 PRO 47 46 46 PRO PRO A . n A 1 48 GLN 48 47 47 GLN GLN A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 PHE 52 51 51 PHE PHE A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 TYR 56 55 55 TYR TYR A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 GLU 59 58 58 GLU GLU A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 PRO 62 61 61 PRO PRO A . n A 1 63 ARG 63 62 62 ARG ARG A . n A 1 64 ARG 64 63 63 ARG ARG A . n A 1 65 VAL 65 64 64 VAL VAL A . n A 1 66 LYS 66 65 65 LYS LYS A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 TRP 68 67 67 TRP TRP A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 HIS 71 70 70 HIS HIS A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 MSE 74 73 73 MSE MSE A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 GLN 76 75 75 GLN GLN A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 PHE 78 77 77 PHE PHE A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 PRO 81 80 80 PRO PRO A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 CYS 84 83 83 CYS CYS A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 HIS 86 85 85 HIS HIS A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 TYR 90 89 89 TYR TYR A . n A 1 91 ASP 91 90 90 ASP ASP A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 ARG 93 92 92 ARG ARG A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 SER 96 95 95 SER SER A . n A 1 97 PRO 97 96 96 PRO PRO A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 SER 99 98 98 SER SER A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 ARG 101 100 100 ARG ARG A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 ALA 103 102 102 ALA ALA A . n A 1 104 GLN 104 103 103 GLN GLN A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 GLY 108 107 107 GLY GLY A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 PRO 110 109 109 PRO PRO A . n A 1 111 ASP 111 110 110 ASP ASP A . n A 1 112 ASN 112 111 111 ASN ASN A . n A 1 113 TYR 113 112 112 TYR TYR A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 LEU 116 115 115 LEU LEU A . n A 1 117 ARG 117 116 116 ARG ARG A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 PRO 119 118 118 PRO PRO A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 GLN 121 120 120 GLN GLN A . n A 1 122 VAL 122 121 121 VAL VAL A . n A 1 123 TRP 123 122 122 TRP TRP A . n A 1 124 TYR 124 123 123 TYR TYR A . n A 1 125 GLY 125 124 124 GLY GLY A . n A 1 126 PHE 126 125 125 PHE PHE A . n A 1 127 ALA 127 126 126 ALA ALA A . n A 1 128 ALA 128 127 127 ALA ALA A . n A 1 129 THR 129 128 128 THR THR A . n A 1 130 GLY 130 129 129 GLY GLY A . n A 1 131 ASP 131 130 130 ASP ASP A . n A 1 132 THR 132 131 131 THR THR A . n A 1 133 PRO 133 132 132 PRO PRO A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 LEU 135 134 134 LEU LEU A . n A 1 136 VAL 136 135 135 VAL VAL A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 ASN 138 137 137 ASN ASN A . n A 1 139 CYS 139 138 138 CYS CYS A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 ILE 142 141 141 ILE ILE A . n A 1 143 PRO 143 142 142 PRO PRO A . n A 1 144 HIS 144 143 143 HIS HIS A . n A 1 145 ARG 145 144 144 ARG ARG A . n A 1 146 GLN 146 145 145 GLN GLN A . n A 1 147 GLY 147 146 146 GLY GLY A . n A 1 148 GLU 148 147 147 GLU GLU A . n A 1 149 SER 149 148 148 SER SER A . n A 1 150 GLU 150 149 149 GLU GLU A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 PRO 153 152 152 PRO PRO A . n A 1 154 GLN 154 153 153 GLN GLN A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 ALA 156 155 155 ALA ALA A . n A 1 157 PRO 157 156 156 PRO PRO A . n A 1 158 PHE 158 157 157 PHE PHE A . n A 1 159 ILE 159 158 158 ILE ILE A . n A 1 160 PRO 160 159 159 PRO PRO A . n A 1 161 PHE 161 160 160 PHE PHE A . n A 1 162 SER 162 161 161 SER SER A . n A 1 163 TRP 163 162 162 TRP TRP A . n A 1 164 ALA 164 163 163 ALA ALA A . n A 1 165 GLY 165 164 164 GLY GLY A . n A 1 166 ALA 166 165 165 ALA ALA A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 SER 169 168 168 SER SER A . n A 1 170 GLY 170 169 169 GLY GLY A . n A 1 171 THR 171 170 170 THR THR A . n A 1 172 PRO 172 171 ? ? ? A . n A 1 173 VAL 173 172 ? ? ? A . n A 1 174 MSE 174 173 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL 1 174 1 UNL UNL A . C 3 CIT 1 175 2 CIT CIT A . D 3 CIT 1 176 3 CIT CIT A . E 4 PG4 1 177 4 PG4 PG4 A . F 5 GOL 1 178 5 GOL GOL A . G 5 GOL 1 179 6 GOL GOL A . H 6 HOH 1 180 7 HOH HOH A . H 6 HOH 2 181 8 HOH HOH A . H 6 HOH 3 182 9 HOH HOH A . H 6 HOH 4 183 10 HOH HOH A . H 6 HOH 5 184 11 HOH HOH A . H 6 HOH 6 185 12 HOH HOH A . H 6 HOH 7 186 13 HOH HOH A . H 6 HOH 8 187 14 HOH HOH A . H 6 HOH 9 188 15 HOH HOH A . H 6 HOH 10 189 16 HOH HOH A . H 6 HOH 11 190 17 HOH HOH A . H 6 HOH 12 191 18 HOH HOH A . H 6 HOH 13 192 19 HOH HOH A . H 6 HOH 14 193 20 HOH HOH A . H 6 HOH 15 194 21 HOH HOH A . H 6 HOH 16 195 22 HOH HOH A . H 6 HOH 17 196 23 HOH HOH A . H 6 HOH 18 197 24 HOH HOH A . H 6 HOH 19 198 25 HOH HOH A . H 6 HOH 20 199 26 HOH HOH A . H 6 HOH 21 200 27 HOH HOH A . H 6 HOH 22 201 28 HOH HOH A . H 6 HOH 23 202 29 HOH HOH A . H 6 HOH 24 203 30 HOH HOH A . H 6 HOH 25 204 31 HOH HOH A . H 6 HOH 26 205 32 HOH HOH A . H 6 HOH 27 206 33 HOH HOH A . H 6 HOH 28 207 34 HOH HOH A . H 6 HOH 29 208 35 HOH HOH A . H 6 HOH 30 209 36 HOH HOH A . H 6 HOH 31 210 37 HOH HOH A . H 6 HOH 32 211 38 HOH HOH A . H 6 HOH 33 212 39 HOH HOH A . H 6 HOH 34 213 40 HOH HOH A . H 6 HOH 35 214 41 HOH HOH A . H 6 HOH 36 215 42 HOH HOH A . H 6 HOH 37 216 43 HOH HOH A . H 6 HOH 38 217 44 HOH HOH A . H 6 HOH 39 218 45 HOH HOH A . H 6 HOH 40 219 46 HOH HOH A . H 6 HOH 41 220 47 HOH HOH A . H 6 HOH 42 221 48 HOH HOH A . H 6 HOH 43 222 49 HOH HOH A . H 6 HOH 44 223 50 HOH HOH A . H 6 HOH 45 224 51 HOH HOH A . H 6 HOH 46 225 52 HOH HOH A . H 6 HOH 47 226 53 HOH HOH A . H 6 HOH 48 227 54 HOH HOH A . H 6 HOH 49 228 55 HOH HOH A . H 6 HOH 50 229 56 HOH HOH A . H 6 HOH 51 230 57 HOH HOH A . H 6 HOH 52 231 58 HOH HOH A . H 6 HOH 53 232 59 HOH HOH A . H 6 HOH 54 233 60 HOH HOH A . H 6 HOH 55 234 61 HOH HOH A . H 6 HOH 56 235 62 HOH HOH A . H 6 HOH 57 236 63 HOH HOH A . H 6 HOH 58 237 64 HOH HOH A . H 6 HOH 59 238 65 HOH HOH A . H 6 HOH 60 239 66 HOH HOH A . H 6 HOH 61 240 67 HOH HOH A . H 6 HOH 62 241 68 HOH HOH A . H 6 HOH 63 242 69 HOH HOH A . H 6 HOH 64 243 70 HOH HOH A . H 6 HOH 65 244 71 HOH HOH A . H 6 HOH 66 245 72 HOH HOH A . H 6 HOH 67 246 73 HOH HOH A . H 6 HOH 68 247 74 HOH HOH A . H 6 HOH 69 248 75 HOH HOH A . H 6 HOH 70 249 76 HOH HOH A . H 6 HOH 71 250 77 HOH HOH A . H 6 HOH 72 251 78 HOH HOH A . H 6 HOH 73 252 79 HOH HOH A . H 6 HOH 74 253 80 HOH HOH A . H 6 HOH 75 254 81 HOH HOH A . H 6 HOH 76 255 82 HOH HOH A . H 6 HOH 77 256 83 HOH HOH A . H 6 HOH 78 257 84 HOH HOH A . H 6 HOH 79 258 85 HOH HOH A . H 6 HOH 80 259 86 HOH HOH A . H 6 HOH 81 260 87 HOH HOH A . H 6 HOH 82 261 88 HOH HOH A . H 6 HOH 83 262 89 HOH HOH A . H 6 HOH 84 263 90 HOH HOH A . H 6 HOH 85 264 91 HOH HOH A . H 6 HOH 86 265 92 HOH HOH A . H 6 HOH 87 266 93 HOH HOH A . H 6 HOH 88 267 94 HOH HOH A . H 6 HOH 89 268 95 HOH HOH A . H 6 HOH 90 269 96 HOH HOH A . H 6 HOH 91 270 97 HOH HOH A . H 6 HOH 92 271 98 HOH HOH A . H 6 HOH 93 272 99 HOH HOH A . H 6 HOH 94 273 100 HOH HOH A . H 6 HOH 95 274 101 HOH HOH A . H 6 HOH 96 275 102 HOH HOH A . H 6 HOH 97 276 103 HOH HOH A . H 6 HOH 98 277 104 HOH HOH A . H 6 HOH 99 278 105 HOH HOH A . H 6 HOH 100 279 106 HOH HOH A . H 6 HOH 101 280 107 HOH HOH A . H 6 HOH 102 281 108 HOH HOH A . H 6 HOH 103 282 109 HOH HOH A . H 6 HOH 104 283 110 HOH HOH A . H 6 HOH 105 284 111 HOH HOH A . H 6 HOH 106 285 112 HOH HOH A . H 6 HOH 107 286 113 HOH HOH A . H 6 HOH 108 287 114 HOH HOH A . H 6 HOH 109 288 115 HOH HOH A . H 6 HOH 110 289 116 HOH HOH A . H 6 HOH 111 290 117 HOH HOH A . H 6 HOH 112 291 118 HOH HOH A . H 6 HOH 113 292 119 HOH HOH A . H 6 HOH 114 293 120 HOH HOH A . H 6 HOH 115 294 121 HOH HOH A . H 6 HOH 116 295 122 HOH HOH A . H 6 HOH 117 296 123 HOH HOH A . H 6 HOH 118 297 124 HOH HOH A . H 6 HOH 119 298 125 HOH HOH A . H 6 HOH 120 299 126 HOH HOH A . H 6 HOH 121 300 127 HOH HOH A . H 6 HOH 122 301 128 HOH HOH A . H 6 HOH 123 302 129 HOH HOH A . H 6 HOH 124 303 130 HOH HOH A . H 6 HOH 125 304 131 HOH HOH A . H 6 HOH 126 305 132 HOH HOH A . H 6 HOH 127 306 133 HOH HOH A . H 6 HOH 128 307 134 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 41 A MSE 40 ? MET SELENOMETHIONINE 2 A MSE 74 A MSE 73 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6460 ? 1 MORE -2 ? 1 'SSA (A^2)' 13620 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 25.6700000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.4940 _pdbx_refine_tls.origin_y 14.6320 _pdbx_refine_tls.origin_z 2.6490 _pdbx_refine_tls.T[1][1] -0.1268 _pdbx_refine_tls.T[2][2] 0.0027 _pdbx_refine_tls.T[3][3] -0.0966 _pdbx_refine_tls.T[1][2] -0.0040 _pdbx_refine_tls.T[1][3] -0.0097 _pdbx_refine_tls.T[2][3] -0.0007 _pdbx_refine_tls.L[1][1] 0.9209 _pdbx_refine_tls.L[2][2] 0.6192 _pdbx_refine_tls.L[3][3] 0.7390 _pdbx_refine_tls.L[1][2] 0.1130 _pdbx_refine_tls.L[1][3] -0.4399 _pdbx_refine_tls.L[2][3] -0.1001 _pdbx_refine_tls.S[1][1] -0.0022 _pdbx_refine_tls.S[2][2] -0.0140 _pdbx_refine_tls.S[3][3] 0.0162 _pdbx_refine_tls.S[1][2] 0.0673 _pdbx_refine_tls.S[1][3] 0.0147 _pdbx_refine_tls.S[2][3] -0.0225 _pdbx_refine_tls.S[2][1] -0.0548 _pdbx_refine_tls.S[3][1] -0.0614 _pdbx_refine_tls.S[3][2] -0.0338 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 170 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_seq_id 14 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3EJK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 83 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 S1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 UNL _pdbx_validate_close_contact.auth_seq_id_2 174 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 40 ? ? -138.27 -64.63 2 1 PRO A 159 ? ? -74.40 49.68 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 93 ? CD ? A GLU 94 CD 2 1 Y 1 A GLU 93 ? OE1 ? A GLU 94 OE1 3 1 Y 1 A GLU 93 ? OE2 ? A GLU 94 OE2 4 1 Y 1 A LYS 94 ? CE ? A LYS 95 CE 5 1 Y 1 A LYS 94 ? NZ ? A LYS 95 NZ 6 1 Y 1 A GLN 145 ? CG ? A GLN 146 CG 7 1 Y 1 A GLN 145 ? CD ? A GLN 146 CD 8 1 Y 1 A GLN 145 ? OE1 ? A GLN 146 OE1 9 1 Y 1 A GLN 145 ? NE2 ? A GLN 146 NE2 10 1 Y 1 A ARG 150 ? NE ? A ARG 151 NE 11 1 Y 1 A ARG 150 ? CZ ? A ARG 151 CZ 12 1 Y 1 A ARG 150 ? NH1 ? A ARG 151 NH1 13 1 Y 1 A ARG 150 ? NH2 ? A ARG 151 NH2 14 1 N 1 A PG4 177 ? C5 ? E PG4 1 C5 15 1 N 1 A PG4 177 ? C6 ? E PG4 1 C6 16 1 N 1 A PG4 177 ? O4 ? E PG4 1 O4 17 1 N 1 A PG4 177 ? C7 ? E PG4 1 C7 18 1 N 1 A PG4 177 ? C8 ? E PG4 1 C8 19 1 N 1 A PG4 177 ? O5 ? E PG4 1 O5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ASP 2 ? A ASP 3 4 1 Y 1 A ILE 3 ? A ILE 4 5 1 Y 1 A MSE 4 ? A MSE 5 6 1 Y 1 A LEU 5 ? A LEU 6 7 1 Y 1 A ASN 6 ? A ASN 7 8 1 Y 1 A THR 7 ? A THR 8 9 1 Y 1 A ALA 8 ? A ALA 9 10 1 Y 1 A ASP 9 ? A ASP 10 11 1 Y 1 A ILE 10 ? A ILE 11 12 1 Y 1 A SER 11 ? A SER 12 13 1 Y 1 A ALA 12 ? A ALA 13 14 1 Y 1 A ALA 13 ? A ALA 14 15 1 Y 1 A PRO 171 ? A PRO 172 16 1 Y 1 A VAL 172 ? A VAL 173 17 1 Y 1 A MSE 173 ? A MSE 174 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 'CITRIC ACID' CIT 4 'TETRAETHYLENE GLYCOL' PG4 5 GLYCEROL GOL 6 water HOH #