data_3EJM # _entry.id 3EJM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EJM pdb_00003ejm 10.2210/pdb3ejm/pdb RCSB RCSB049404 ? ? WWPDB D_1000049404 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2b8p _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EJM _pdbx_database_status.recvd_initial_deposition_date 2008-09-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jeudy, S.' 1 'Lartigue, A.' 2 'Claverie, J.M.' 3 'Abergel, C.' 4 # _citation.id primary _citation.title 'Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 7142 _citation.page_last 7150 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19439473 _citation.pdbx_database_id_DOI 10.1128/JVI.00511-09 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeudy, S.' 1 ? primary 'Lartigue, A.' 2 ? primary 'Claverie, J.M.' 3 ? primary 'Abergel, C.' 4 ? # _cell.entry_id 3EJM _cell.length_a 70.153 _cell.length_b 70.153 _cell.length_c 104.937 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EJM _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 16628.791 2 2.7.4.6 'residues 91 to 94 [NILT] replaced with [NTNPLASA]' ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 240 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDP kinase, NDK' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIV YEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKMETDN ; _entity_poly.pdbx_seq_one_letter_code_can ;YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIV YEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKMETDN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 LYS n 1 3 LYS n 1 4 ALA n 1 5 GLY n 1 6 LEU n 1 7 GLN n 1 8 ARG n 1 9 THR n 1 10 LEU n 1 11 VAL n 1 12 LEU n 1 13 ILE n 1 14 LYS n 1 15 PRO n 1 16 ASP n 1 17 ALA n 1 18 PHE n 1 19 GLU n 1 20 ARG n 1 21 SER n 1 22 LEU n 1 23 VAL n 1 24 ALA n 1 25 GLU n 1 26 ILE n 1 27 MET n 1 28 GLY n 1 29 ARG n 1 30 ILE n 1 31 GLU n 1 32 LYS n 1 33 LYS n 1 34 ASN n 1 35 PHE n 1 36 LYS n 1 37 ILE n 1 38 VAL n 1 39 SER n 1 40 MET n 1 41 LYS n 1 42 PHE n 1 43 TRP n 1 44 SER n 1 45 LYS n 1 46 ALA n 1 47 PRO n 1 48 ARG n 1 49 ASN n 1 50 LEU n 1 51 ILE n 1 52 GLU n 1 53 GLN n 1 54 HIS n 1 55 TYR n 1 56 LYS n 1 57 GLU n 1 58 HIS n 1 59 SER n 1 60 GLU n 1 61 GLN n 1 62 SER n 1 63 TYR n 1 64 PHE n 1 65 ASN n 1 66 ASP n 1 67 ASN n 1 68 CYS n 1 69 ASP n 1 70 PHE n 1 71 MET n 1 72 VAL n 1 73 SER n 1 74 GLY n 1 75 PRO n 1 76 ILE n 1 77 ILE n 1 78 SER n 1 79 ILE n 1 80 VAL n 1 81 TYR n 1 82 GLU n 1 83 GLY n 1 84 THR n 1 85 ASP n 1 86 ALA n 1 87 ILE n 1 88 SER n 1 89 LYS n 1 90 ILE n 1 91 ARG n 1 92 ARG n 1 93 LEU n 1 94 GLN n 1 95 GLY n 1 96 ASN n 1 97 THR n 1 98 ASN n 1 99 PRO n 1 100 LEU n 1 101 ALA n 1 102 SER n 1 103 ALA n 1 104 PRO n 1 105 GLY n 1 106 THR n 1 107 ILE n 1 108 ARG n 1 109 GLY n 1 110 ASP n 1 111 LEU n 1 112 ALA n 1 113 ASN n 1 114 ASP n 1 115 ILE n 1 116 ARG n 1 117 GLU n 1 118 ASN n 1 119 LEU n 1 120 ILE n 1 121 HIS n 1 122 ALA n 1 123 SER n 1 124 ASP n 1 125 SER n 1 126 GLU n 1 127 ASP n 1 128 SER n 1 129 ALA n 1 130 VAL n 1 131 ASP n 1 132 GLU n 1 133 ILE n 1 134 SER n 1 135 ILE n 1 136 TRP n 1 137 PHE n 1 138 PRO n 1 139 GLU n 1 140 THR n 1 141 LYS n 1 142 MET n 1 143 GLU n 1 144 THR n 1 145 ASP n 1 146 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NDK, MIMI_R418' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acanthamoeba polyphaga mimivirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 212035 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDIGS02 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_MIMIV _struct_ref.pdbx_db_accession Q5UQL3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDA ISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKMETDN ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EJM A 7 ? 146 ? Q5UQL3 2 ? 137 ? 2 141 2 1 3EJM B 7 ? 146 ? Q5UQL3 2 ? 137 ? 2 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EJM TYR A 1 ? UNP Q5UQL3 ? ? 'expression tag' -4 1 1 3EJM LYS A 2 ? UNP Q5UQL3 ? ? 'expression tag' -3 2 1 3EJM LYS A 3 ? UNP Q5UQL3 ? ? 'expression tag' -2 3 1 3EJM ALA A 4 ? UNP Q5UQL3 ? ? 'expression tag' -1 4 1 3EJM GLY A 5 ? UNP Q5UQL3 ? ? 'expression tag' 0 5 1 3EJM LEU A 6 ? UNP Q5UQL3 ? ? 'expression tag' 1 6 1 3EJM ASN A 96 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 91 7 1 3EJM THR A 97 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 92 8 1 3EJM PRO A 99 ? UNP Q5UQL3 ILE 92 'SEE REMARK 999' 94 9 1 3EJM ALA A 101 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 96 10 1 3EJM SER A 102 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 97 11 1 3EJM ALA A 103 ? UNP Q5UQL3 THR 94 'SEE REMARK 999' 98 12 2 3EJM TYR B 1 ? UNP Q5UQL3 ? ? 'expression tag' -4 13 2 3EJM LYS B 2 ? UNP Q5UQL3 ? ? 'expression tag' -3 14 2 3EJM LYS B 3 ? UNP Q5UQL3 ? ? 'expression tag' -2 15 2 3EJM ALA B 4 ? UNP Q5UQL3 ? ? 'expression tag' -1 16 2 3EJM GLY B 5 ? UNP Q5UQL3 ? ? 'expression tag' 0 17 2 3EJM LEU B 6 ? UNP Q5UQL3 ? ? 'expression tag' 1 18 2 3EJM ASN B 96 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 91 19 2 3EJM THR B 97 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 92 20 2 3EJM PRO B 99 ? UNP Q5UQL3 ILE 92 'SEE REMARK 999' 94 21 2 3EJM ALA B 101 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 96 22 2 3EJM SER B 102 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 97 23 2 3EJM ALA B 103 ? UNP Q5UQL3 THR 94 'SEE REMARK 999' 98 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3EJM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.1M sodium citrate, 0.1M Tris, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-08-07 _diffrn_detector.details 'Two mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'either 111 or 311 Silicon single cristals' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 3EJM _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.95 _reflns.number_obs 23045 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.082 _reflns.pdbx_netI_over_sigmaI 6.5 _reflns.B_iso_Wilson_estimate 24.505 _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.06 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.051 _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3EJM _refine.ls_number_reflns_obs 21342 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.963 _refine.ls_d_res_high 1.950 _refine.ls_percent_reflns_obs 99.95 _refine.ls_R_factor_obs 0.1657 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1632 _refine.ls_R_factor_R_free 0.2118 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.03 _refine.ls_number_reflns_R_free 1073 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.946 _refine.aniso_B[1][1] -0.126 _refine.aniso_B[2][2] -0.126 _refine.aniso_B[3][3] 0.251 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.397 _refine.solvent_model_param_bsol 43.201 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 2b8p _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.22 _refine.pdbx_overall_phase_error 20.49 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2144 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 240 _refine_hist.number_atoms_total 2442 _refine_hist.d_res_high 1.950 _refine_hist.d_res_low 22.963 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.012 ? ? 2246 'X-RAY DIFFRACTION' ? f_angle_d 1.534 ? ? 3046 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.069 ? ? 844 'X-RAY DIFFRACTION' ? f_chiral_restr 0.094 ? ? 332 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 388 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.9500 2.0387 2532 0.2007 100.00 0.2470 . . 128 . . . . 'X-RAY DIFFRACTION' . 2.0387 2.1461 2511 0.1775 100.00 0.2193 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.1461 2.2805 2544 0.1661 100.00 0.2299 . . 125 . . . . 'X-RAY DIFFRACTION' . 2.2805 2.4564 2511 0.1711 100.00 0.2224 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.4564 2.7032 2539 0.1772 100.00 0.2458 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.7032 3.0936 2519 0.1800 100.00 0.2607 . . 134 . . . . 'X-RAY DIFFRACTION' . 3.0936 3.8945 2544 0.1486 100.00 0.1883 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.8945 22.9646 2569 0.1403 100.00 0.1608 . . 124 . . . . # _struct.entry_id 3EJM _struct.title 'Crystal structure of the mimivirus NDK +Kpn mutant complexed with GDP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EJM _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;NDK Mimivirus phosphotransferase nucleotide binding, ATP-binding, Kinase, Magnesium, Metal-binding, Nucleotide metabolism, Nucleotide-binding, Phosphoprotein, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 14 ? ARG A 20 ? LYS A 9 ARG A 15 1 ? 7 HELX_P HELX_P2 2 LEU A 22 ? LYS A 33 ? LEU A 17 LYS A 28 1 ? 12 HELX_P HELX_P3 3 PRO A 47 ? TYR A 55 ? PRO A 42 TYR A 50 1 ? 9 HELX_P HELX_P4 4 LYS A 56 ? SER A 59 ? LYS A 51 SER A 54 5 ? 4 HELX_P HELX_P5 5 TYR A 63 ? VAL A 72 ? TYR A 58 VAL A 67 1 ? 10 HELX_P HELX_P6 6 ASP A 85 ? GLY A 95 ? ASP A 80 GLY A 90 1 ? 11 HELX_P HELX_P7 7 THR A 106 ? ALA A 112 ? THR A 101 ALA A 107 1 ? 7 HELX_P HELX_P8 8 SER A 125 ? PHE A 137 ? SER A 120 PHE A 132 1 ? 13 HELX_P HELX_P9 9 LYS B 14 ? ARG B 20 ? LYS B 9 ARG B 15 1 ? 7 HELX_P HELX_P10 10 LEU B 22 ? LYS B 33 ? LEU B 17 LYS B 28 1 ? 12 HELX_P HELX_P11 11 PRO B 47 ? TYR B 55 ? PRO B 42 TYR B 50 1 ? 9 HELX_P HELX_P12 12 LYS B 56 ? SER B 59 ? LYS B 51 SER B 54 5 ? 4 HELX_P HELX_P13 13 TYR B 63 ? VAL B 72 ? TYR B 58 VAL B 67 1 ? 10 HELX_P HELX_P14 14 ASP B 85 ? GLY B 95 ? ASP B 80 GLY B 90 1 ? 11 HELX_P HELX_P15 15 THR B 106 ? ALA B 112 ? THR B 101 ALA B 107 1 ? 7 HELX_P HELX_P16 16 SER B 125 ? PHE B 137 ? SER B 120 PHE B 132 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C GDP . O1B ? ? ? 1_555 D MG . MG ? ? A GDP 201 A MG 203 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc2 metalc ? ? C GDP . O1A ? ? ? 1_555 D MG . MG ? ? A GDP 201 A MG 203 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 240 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 203 A HOH 308 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc5 metalc ? ? E GDP . O1B ? ? ? 1_555 F MG . MG ? ? B GDP 202 B MG 204 1_555 ? ? ? ? ? ? ? 2.497 ? ? metalc6 metalc ? ? E GDP . O1A ? ? ? 1_555 F MG . MG ? ? B GDP 202 B MG 204 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 204 B HOH 306 1_555 ? ? ? ? ? ? ? 2.697 ? ? metalc8 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 204 B HOH 322 1_555 ? ? ? ? ? ? ? 2.353 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 36 ? TRP A 43 ? LYS A 31 TRP A 38 A 2 ILE A 76 ? GLY A 83 ? ILE A 71 GLY A 78 A 3 GLN A 7 ? ILE A 13 ? GLN A 2 ILE A 8 A 4 ILE A 120 ? ALA A 122 ? ILE A 115 ALA A 117 B 1 LYS B 36 ? TRP B 43 ? LYS B 31 TRP B 38 B 2 ILE B 76 ? GLY B 83 ? ILE B 71 GLY B 78 B 3 GLN B 7 ? ILE B 13 ? GLN B 2 ILE B 8 B 4 ILE B 120 ? ALA B 122 ? ILE B 115 ALA B 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 38 ? N VAL A 33 O VAL A 80 ? O VAL A 75 A 2 3 O ILE A 79 ? O ILE A 74 N VAL A 11 ? N VAL A 6 A 3 4 N LEU A 12 ? N LEU A 7 O HIS A 121 ? O HIS A 116 B 1 2 N VAL B 38 ? N VAL B 33 O VAL B 80 ? O VAL B 75 B 2 3 O ILE B 77 ? O ILE B 72 N ILE B 13 ? N ILE B 8 B 3 4 N LEU B 12 ? N LEU B 7 O HIS B 121 ? O HIS B 116 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDP 201 ? 18 'BINDING SITE FOR RESIDUE GDP A 201' AC2 Software A MG 203 ? 3 'BINDING SITE FOR RESIDUE MG A 203' AC3 Software B GDP 202 ? 20 'BINDING SITE FOR RESIDUE GDP B 202' AC4 Software B MG 204 ? 3 'BINDING SITE FOR RESIDUE MG B 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 LYS A 14 ? LYS A 9 . ? 1_555 ? 2 AC1 18 TYR A 55 ? TYR A 50 . ? 1_555 ? 3 AC1 18 HIS A 58 ? HIS A 53 . ? 1_555 ? 4 AC1 18 TYR A 63 ? TYR A 58 . ? 1_555 ? 5 AC1 18 ASN A 67 ? ASN A 62 . ? 1_555 ? 6 AC1 18 ARG A 91 ? ARG A 86 . ? 1_555 ? 7 AC1 18 THR A 97 ? THR A 92 . ? 1_555 ? 8 AC1 18 ARG A 108 ? ARG A 103 . ? 1_555 ? 9 AC1 18 ILE A 115 ? ILE A 110 . ? 1_555 ? 10 AC1 18 ARG A 116 ? ARG A 111 . ? 1_555 ? 11 AC1 18 ASN A 118 ? ASN A 113 . ? 1_555 ? 12 AC1 18 MG D . ? MG A 203 . ? 1_555 ? 13 AC1 18 HOH G . ? HOH A 213 . ? 1_555 ? 14 AC1 18 HOH G . ? HOH A 214 . ? 1_555 ? 15 AC1 18 HOH G . ? HOH A 234 . ? 1_555 ? 16 AC1 18 HOH G . ? HOH A 236 . ? 1_555 ? 17 AC1 18 HOH G . ? HOH A 248 . ? 1_555 ? 18 AC1 18 HOH G . ? HOH A 265 . ? 1_555 ? 19 AC2 3 GDP C . ? GDP A 201 . ? 1_555 ? 20 AC2 3 HOH G . ? HOH A 240 . ? 1_555 ? 21 AC2 3 HOH G . ? HOH A 308 . ? 1_555 ? 22 AC3 20 LYS B 14 ? LYS B 9 . ? 1_555 ? 23 AC3 20 TYR B 55 ? TYR B 50 . ? 1_555 ? 24 AC3 20 HIS B 58 ? HIS B 53 . ? 1_555 ? 25 AC3 20 TYR B 63 ? TYR B 58 . ? 1_555 ? 26 AC3 20 ASN B 67 ? ASN B 62 . ? 1_555 ? 27 AC3 20 ARG B 91 ? ARG B 86 . ? 1_555 ? 28 AC3 20 THR B 97 ? THR B 92 . ? 1_555 ? 29 AC3 20 ARG B 108 ? ARG B 103 . ? 1_555 ? 30 AC3 20 ILE B 115 ? ILE B 110 . ? 1_555 ? 31 AC3 20 ARG B 116 ? ARG B 111 . ? 1_555 ? 32 AC3 20 ASN B 118 ? ASN B 113 . ? 1_555 ? 33 AC3 20 MG F . ? MG B 204 . ? 1_555 ? 34 AC3 20 HOH H . ? HOH B 207 . ? 1_555 ? 35 AC3 20 HOH H . ? HOH B 213 . ? 1_555 ? 36 AC3 20 HOH H . ? HOH B 221 . ? 1_555 ? 37 AC3 20 HOH H . ? HOH B 271 . ? 1_555 ? 38 AC3 20 HOH H . ? HOH B 275 . ? 1_555 ? 39 AC3 20 HOH H . ? HOH B 300 . ? 1_555 ? 40 AC3 20 HOH H . ? HOH B 327 . ? 1_555 ? 41 AC3 20 HOH H . ? HOH B 330 . ? 1_555 ? 42 AC4 3 GDP E . ? GDP B 202 . ? 1_555 ? 43 AC4 3 HOH H . ? HOH B 306 . ? 1_555 ? 44 AC4 3 HOH H . ? HOH B 322 . ? 1_555 ? # _database_PDB_matrix.entry_id 3EJM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3EJM _atom_sites.fract_transf_matrix[1][1] 0.014255 _atom_sites.fract_transf_matrix[1][2] 0.008230 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016460 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009530 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 -4 ? ? ? A . n A 1 2 LYS 2 -3 ? ? ? A . n A 1 3 LYS 3 -2 ? ? ? A . n A 1 4 ALA 4 -1 ? ? ? A . n A 1 5 GLY 5 0 ? ? ? A . n A 1 6 LEU 6 1 1 LEU LEU A . n A 1 7 GLN 7 2 2 GLN GLN A . n A 1 8 ARG 8 3 3 ARG ARG A . n A 1 9 THR 9 4 4 THR THR A . n A 1 10 LEU 10 5 5 LEU LEU A . n A 1 11 VAL 11 6 6 VAL VAL A . n A 1 12 LEU 12 7 7 LEU LEU A . n A 1 13 ILE 13 8 8 ILE ILE A . n A 1 14 LYS 14 9 9 LYS LYS A . n A 1 15 PRO 15 10 10 PRO PRO A . n A 1 16 ASP 16 11 11 ASP ASP A . n A 1 17 ALA 17 12 12 ALA ALA A . n A 1 18 PHE 18 13 13 PHE PHE A . n A 1 19 GLU 19 14 14 GLU GLU A . n A 1 20 ARG 20 15 15 ARG ARG A . n A 1 21 SER 21 16 16 SER SER A . n A 1 22 LEU 22 17 17 LEU LEU A . n A 1 23 VAL 23 18 18 VAL VAL A . n A 1 24 ALA 24 19 19 ALA ALA A . n A 1 25 GLU 25 20 20 GLU GLU A . n A 1 26 ILE 26 21 21 ILE ILE A . n A 1 27 MET 27 22 22 MET MET A . n A 1 28 GLY 28 23 23 GLY GLY A . n A 1 29 ARG 29 24 24 ARG ARG A . n A 1 30 ILE 30 25 25 ILE ILE A . n A 1 31 GLU 31 26 26 GLU GLU A . n A 1 32 LYS 32 27 27 LYS LYS A . n A 1 33 LYS 33 28 28 LYS LYS A . n A 1 34 ASN 34 29 29 ASN ASN A . n A 1 35 PHE 35 30 30 PHE PHE A . n A 1 36 LYS 36 31 31 LYS LYS A . n A 1 37 ILE 37 32 32 ILE ILE A . n A 1 38 VAL 38 33 33 VAL VAL A . n A 1 39 SER 39 34 34 SER SER A . n A 1 40 MET 40 35 35 MET MET A . n A 1 41 LYS 41 36 36 LYS LYS A . n A 1 42 PHE 42 37 37 PHE PHE A . n A 1 43 TRP 43 38 38 TRP TRP A . n A 1 44 SER 44 39 39 SER SER A . n A 1 45 LYS 45 40 40 LYS LYS A . n A 1 46 ALA 46 41 41 ALA ALA A . n A 1 47 PRO 47 42 42 PRO PRO A . n A 1 48 ARG 48 43 43 ARG ARG A . n A 1 49 ASN 49 44 44 ASN ASN A . n A 1 50 LEU 50 45 45 LEU LEU A . n A 1 51 ILE 51 46 46 ILE ILE A . n A 1 52 GLU 52 47 47 GLU GLU A . n A 1 53 GLN 53 48 48 GLN GLN A . n A 1 54 HIS 54 49 49 HIS HIS A . n A 1 55 TYR 55 50 50 TYR TYR A . n A 1 56 LYS 56 51 51 LYS LYS A . n A 1 57 GLU 57 52 52 GLU GLU A . n A 1 58 HIS 58 53 53 HIS HIS A . n A 1 59 SER 59 54 54 SER SER A . n A 1 60 GLU 60 55 55 GLU GLU A . n A 1 61 GLN 61 56 56 GLN GLN A . n A 1 62 SER 62 57 57 SER SER A . n A 1 63 TYR 63 58 58 TYR TYR A . n A 1 64 PHE 64 59 59 PHE PHE A . n A 1 65 ASN 65 60 60 ASN ASN A . n A 1 66 ASP 66 61 61 ASP ASP A . n A 1 67 ASN 67 62 62 ASN ASN A . n A 1 68 CYS 68 63 63 CYS CYS A . n A 1 69 ASP 69 64 64 ASP ASP A . n A 1 70 PHE 70 65 65 PHE PHE A . n A 1 71 MET 71 66 66 MET MET A . n A 1 72 VAL 72 67 67 VAL VAL A . n A 1 73 SER 73 68 68 SER SER A . n A 1 74 GLY 74 69 69 GLY GLY A . n A 1 75 PRO 75 70 70 PRO PRO A . n A 1 76 ILE 76 71 71 ILE ILE A . n A 1 77 ILE 77 72 72 ILE ILE A . n A 1 78 SER 78 73 73 SER SER A . n A 1 79 ILE 79 74 74 ILE ILE A . n A 1 80 VAL 80 75 75 VAL VAL A . n A 1 81 TYR 81 76 76 TYR TYR A . n A 1 82 GLU 82 77 77 GLU GLU A . n A 1 83 GLY 83 78 78 GLY GLY A . n A 1 84 THR 84 79 79 THR THR A . n A 1 85 ASP 85 80 80 ASP ASP A . n A 1 86 ALA 86 81 81 ALA ALA A . n A 1 87 ILE 87 82 82 ILE ILE A . n A 1 88 SER 88 83 83 SER SER A . n A 1 89 LYS 89 84 84 LYS LYS A . n A 1 90 ILE 90 85 85 ILE ILE A . n A 1 91 ARG 91 86 86 ARG ARG A . n A 1 92 ARG 92 87 87 ARG ARG A . n A 1 93 LEU 93 88 88 LEU LEU A . n A 1 94 GLN 94 89 89 GLN GLN A . n A 1 95 GLY 95 90 90 GLY GLY A . n A 1 96 ASN 96 91 91 ASN ASN A . n A 1 97 THR 97 92 92 THR THR A . n A 1 98 ASN 98 93 93 ASN ASN A . n A 1 99 PRO 99 94 94 PRO PRO A . n A 1 100 LEU 100 95 95 LEU LEU A . n A 1 101 ALA 101 96 96 ALA ALA A . n A 1 102 SER 102 97 97 SER SER A . n A 1 103 ALA 103 98 98 ALA ALA A . n A 1 104 PRO 104 99 99 PRO PRO A . n A 1 105 GLY 105 100 100 GLY GLY A . n A 1 106 THR 106 101 101 THR THR A . n A 1 107 ILE 107 102 102 ILE ILE A . n A 1 108 ARG 108 103 103 ARG ARG A . n A 1 109 GLY 109 104 104 GLY GLY A . n A 1 110 ASP 110 105 105 ASP ASP A . n A 1 111 LEU 111 106 106 LEU LEU A . n A 1 112 ALA 112 107 107 ALA ALA A . n A 1 113 ASN 113 108 108 ASN ASN A . n A 1 114 ASP 114 109 109 ASP ASP A . n A 1 115 ILE 115 110 110 ILE ILE A . n A 1 116 ARG 116 111 111 ARG ARG A . n A 1 117 GLU 117 112 112 GLU GLU A . n A 1 118 ASN 118 113 113 ASN ASN A . n A 1 119 LEU 119 114 114 LEU LEU A . n A 1 120 ILE 120 115 115 ILE ILE A . n A 1 121 HIS 121 116 116 HIS HIS A . n A 1 122 ALA 122 117 117 ALA ALA A . n A 1 123 SER 123 118 118 SER SER A . n A 1 124 ASP 124 119 119 ASP ASP A . n A 1 125 SER 125 120 120 SER SER A . n A 1 126 GLU 126 121 121 GLU GLU A . n A 1 127 ASP 127 122 122 ASP ASP A . n A 1 128 SER 128 123 123 SER SER A . n A 1 129 ALA 129 124 124 ALA ALA A . n A 1 130 VAL 130 125 125 VAL VAL A . n A 1 131 ASP 131 126 126 ASP ASP A . n A 1 132 GLU 132 127 127 GLU GLU A . n A 1 133 ILE 133 128 128 ILE ILE A . n A 1 134 SER 134 129 129 SER SER A . n A 1 135 ILE 135 130 130 ILE ILE A . n A 1 136 TRP 136 131 131 TRP TRP A . n A 1 137 PHE 137 132 132 PHE PHE A . n A 1 138 PRO 138 133 133 PRO PRO A . n A 1 139 GLU 139 134 134 GLU GLU A . n A 1 140 THR 140 135 ? ? ? A . n A 1 141 LYS 141 136 ? ? ? A . n A 1 142 MET 142 137 ? ? ? A . n A 1 143 GLU 143 138 ? ? ? A . n A 1 144 THR 144 139 ? ? ? A . n A 1 145 ASP 145 140 ? ? ? A . n A 1 146 ASN 146 141 ? ? ? A . n B 1 1 TYR 1 -4 ? ? ? B . n B 1 2 LYS 2 -3 ? ? ? B . n B 1 3 LYS 3 -2 ? ? ? B . n B 1 4 ALA 4 -1 ? ? ? B . n B 1 5 GLY 5 0 ? ? ? B . n B 1 6 LEU 6 1 1 LEU LEU B . n B 1 7 GLN 7 2 2 GLN GLN B . n B 1 8 ARG 8 3 3 ARG ARG B . n B 1 9 THR 9 4 4 THR THR B . n B 1 10 LEU 10 5 5 LEU LEU B . n B 1 11 VAL 11 6 6 VAL VAL B . n B 1 12 LEU 12 7 7 LEU LEU B . n B 1 13 ILE 13 8 8 ILE ILE B . n B 1 14 LYS 14 9 9 LYS LYS B . n B 1 15 PRO 15 10 10 PRO PRO B . n B 1 16 ASP 16 11 11 ASP ASP B . n B 1 17 ALA 17 12 12 ALA ALA B . n B 1 18 PHE 18 13 13 PHE PHE B . n B 1 19 GLU 19 14 14 GLU GLU B . n B 1 20 ARG 20 15 15 ARG ARG B . n B 1 21 SER 21 16 16 SER SER B . n B 1 22 LEU 22 17 17 LEU LEU B . n B 1 23 VAL 23 18 18 VAL VAL B . n B 1 24 ALA 24 19 19 ALA ALA B . n B 1 25 GLU 25 20 20 GLU GLU B . n B 1 26 ILE 26 21 21 ILE ILE B . n B 1 27 MET 27 22 22 MET MET B . n B 1 28 GLY 28 23 23 GLY GLY B . n B 1 29 ARG 29 24 24 ARG ARG B . n B 1 30 ILE 30 25 25 ILE ILE B . n B 1 31 GLU 31 26 26 GLU GLU B . n B 1 32 LYS 32 27 27 LYS LYS B . n B 1 33 LYS 33 28 28 LYS LYS B . n B 1 34 ASN 34 29 29 ASN ASN B . n B 1 35 PHE 35 30 30 PHE PHE B . n B 1 36 LYS 36 31 31 LYS LYS B . n B 1 37 ILE 37 32 32 ILE ILE B . n B 1 38 VAL 38 33 33 VAL VAL B . n B 1 39 SER 39 34 34 SER SER B . n B 1 40 MET 40 35 35 MET MET B . n B 1 41 LYS 41 36 36 LYS LYS B . n B 1 42 PHE 42 37 37 PHE PHE B . n B 1 43 TRP 43 38 38 TRP TRP B . n B 1 44 SER 44 39 39 SER SER B . n B 1 45 LYS 45 40 40 LYS LYS B . n B 1 46 ALA 46 41 41 ALA ALA B . n B 1 47 PRO 47 42 42 PRO PRO B . n B 1 48 ARG 48 43 43 ARG ARG B . n B 1 49 ASN 49 44 44 ASN ASN B . n B 1 50 LEU 50 45 45 LEU LEU B . n B 1 51 ILE 51 46 46 ILE ILE B . n B 1 52 GLU 52 47 47 GLU GLU B . n B 1 53 GLN 53 48 48 GLN GLN B . n B 1 54 HIS 54 49 49 HIS HIS B . n B 1 55 TYR 55 50 50 TYR TYR B . n B 1 56 LYS 56 51 51 LYS LYS B . n B 1 57 GLU 57 52 52 GLU GLU B . n B 1 58 HIS 58 53 53 HIS HIS B . n B 1 59 SER 59 54 54 SER SER B . n B 1 60 GLU 60 55 55 GLU GLU B . n B 1 61 GLN 61 56 56 GLN GLN B . n B 1 62 SER 62 57 57 SER SER B . n B 1 63 TYR 63 58 58 TYR TYR B . n B 1 64 PHE 64 59 59 PHE PHE B . n B 1 65 ASN 65 60 60 ASN ASN B . n B 1 66 ASP 66 61 61 ASP ASP B . n B 1 67 ASN 67 62 62 ASN ASN B . n B 1 68 CYS 68 63 63 CYS CYS B . n B 1 69 ASP 69 64 64 ASP ASP B . n B 1 70 PHE 70 65 65 PHE PHE B . n B 1 71 MET 71 66 66 MET MET B . n B 1 72 VAL 72 67 67 VAL VAL B . n B 1 73 SER 73 68 68 SER SER B . n B 1 74 GLY 74 69 69 GLY GLY B . n B 1 75 PRO 75 70 70 PRO PRO B . n B 1 76 ILE 76 71 71 ILE ILE B . n B 1 77 ILE 77 72 72 ILE ILE B . n B 1 78 SER 78 73 73 SER SER B . n B 1 79 ILE 79 74 74 ILE ILE B . n B 1 80 VAL 80 75 75 VAL VAL B . n B 1 81 TYR 81 76 76 TYR TYR B . n B 1 82 GLU 82 77 77 GLU GLU B . n B 1 83 GLY 83 78 78 GLY GLY B . n B 1 84 THR 84 79 79 THR THR B . n B 1 85 ASP 85 80 80 ASP ASP B . n B 1 86 ALA 86 81 81 ALA ALA B . n B 1 87 ILE 87 82 82 ILE ILE B . n B 1 88 SER 88 83 83 SER SER B . n B 1 89 LYS 89 84 84 LYS LYS B . n B 1 90 ILE 90 85 85 ILE ILE B . n B 1 91 ARG 91 86 86 ARG ARG B . n B 1 92 ARG 92 87 87 ARG ARG B . n B 1 93 LEU 93 88 88 LEU LEU B . n B 1 94 GLN 94 89 89 GLN GLN B . n B 1 95 GLY 95 90 90 GLY GLY B . n B 1 96 ASN 96 91 91 ASN ASN B . n B 1 97 THR 97 92 92 THR THR B . n B 1 98 ASN 98 93 93 ASN ASN B . n B 1 99 PRO 99 94 94 PRO PRO B . n B 1 100 LEU 100 95 95 LEU LEU B . n B 1 101 ALA 101 96 96 ALA ALA B . n B 1 102 SER 102 97 97 SER SER B . n B 1 103 ALA 103 98 98 ALA ALA B . n B 1 104 PRO 104 99 99 PRO PRO B . n B 1 105 GLY 105 100 100 GLY GLY B . n B 1 106 THR 106 101 101 THR THR B . n B 1 107 ILE 107 102 102 ILE ILE B . n B 1 108 ARG 108 103 103 ARG ARG B . n B 1 109 GLY 109 104 104 GLY GLY B . n B 1 110 ASP 110 105 105 ASP ASP B . n B 1 111 LEU 111 106 106 LEU LEU B . n B 1 112 ALA 112 107 107 ALA ALA B . n B 1 113 ASN 113 108 108 ASN ASN B . n B 1 114 ASP 114 109 109 ASP ASP B . n B 1 115 ILE 115 110 110 ILE ILE B . n B 1 116 ARG 116 111 111 ARG ARG B . n B 1 117 GLU 117 112 112 GLU GLU B . n B 1 118 ASN 118 113 113 ASN ASN B . n B 1 119 LEU 119 114 114 LEU LEU B . n B 1 120 ILE 120 115 115 ILE ILE B . n B 1 121 HIS 121 116 116 HIS HIS B . n B 1 122 ALA 122 117 117 ALA ALA B . n B 1 123 SER 123 118 118 SER SER B . n B 1 124 ASP 124 119 119 ASP ASP B . n B 1 125 SER 125 120 120 SER SER B . n B 1 126 GLU 126 121 121 GLU GLU B . n B 1 127 ASP 127 122 122 ASP ASP B . n B 1 128 SER 128 123 123 SER SER B . n B 1 129 ALA 129 124 124 ALA ALA B . n B 1 130 VAL 130 125 125 VAL VAL B . n B 1 131 ASP 131 126 126 ASP ASP B . n B 1 132 GLU 132 127 127 GLU GLU B . n B 1 133 ILE 133 128 128 ILE ILE B . n B 1 134 SER 134 129 129 SER SER B . n B 1 135 ILE 135 130 130 ILE ILE B . n B 1 136 TRP 136 131 131 TRP TRP B . n B 1 137 PHE 137 132 132 PHE PHE B . n B 1 138 PRO 138 133 133 PRO PRO B . n B 1 139 GLU 139 134 134 GLU GLU B . n B 1 140 THR 140 135 ? ? ? B . n B 1 141 LYS 141 136 ? ? ? B . n B 1 142 MET 142 137 ? ? ? B . n B 1 143 GLU 143 138 ? ? ? B . n B 1 144 THR 144 139 ? ? ? B . n B 1 145 ASP 145 140 ? ? ? B . n B 1 146 ASN 146 141 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP 1 201 201 GDP GDP A . D 3 MG 1 203 203 MG MG A . E 2 GDP 1 202 202 GDP GDP B . F 3 MG 1 204 204 MG MG B . G 4 HOH 1 204 204 HOH HOH A . G 4 HOH 2 205 205 HOH HOH A . G 4 HOH 3 206 206 HOH HOH A . G 4 HOH 4 207 207 HOH HOH A . G 4 HOH 5 208 208 HOH HOH A . G 4 HOH 6 209 209 HOH HOH A . G 4 HOH 7 210 210 HOH HOH A . G 4 HOH 8 211 211 HOH HOH A . G 4 HOH 9 212 212 HOH HOH A . G 4 HOH 10 213 213 HOH HOH A . G 4 HOH 11 214 214 HOH HOH A . G 4 HOH 12 215 215 HOH HOH A . G 4 HOH 13 216 216 HOH HOH A . G 4 HOH 14 217 217 HOH HOH A . G 4 HOH 15 218 218 HOH HOH A . G 4 HOH 16 219 219 HOH HOH A . G 4 HOH 17 220 220 HOH HOH A . G 4 HOH 18 221 221 HOH HOH A . G 4 HOH 19 222 222 HOH HOH A . G 4 HOH 20 223 223 HOH HOH A . G 4 HOH 21 224 224 HOH HOH A . G 4 HOH 22 225 225 HOH HOH A . G 4 HOH 23 226 226 HOH HOH A . G 4 HOH 24 227 227 HOH HOH A . G 4 HOH 25 228 228 HOH HOH A . G 4 HOH 26 229 229 HOH HOH A . G 4 HOH 27 230 230 HOH HOH A . G 4 HOH 28 231 231 HOH HOH A . G 4 HOH 29 232 232 HOH HOH A . G 4 HOH 30 233 233 HOH HOH A . G 4 HOH 31 234 234 HOH HOH A . G 4 HOH 32 235 235 HOH HOH A . G 4 HOH 33 236 236 HOH HOH A . G 4 HOH 34 237 237 HOH HOH A . G 4 HOH 35 238 238 HOH HOH A . G 4 HOH 36 239 239 HOH HOH A . G 4 HOH 37 240 240 HOH HOH A . G 4 HOH 38 241 241 HOH HOH A . G 4 HOH 39 242 242 HOH HOH A . G 4 HOH 40 243 243 HOH HOH A . G 4 HOH 41 244 244 HOH HOH A . G 4 HOH 42 245 245 HOH HOH A . G 4 HOH 43 246 246 HOH HOH A . G 4 HOH 44 247 247 HOH HOH A . G 4 HOH 45 248 248 HOH HOH A . G 4 HOH 46 249 249 HOH HOH A . G 4 HOH 47 250 250 HOH HOH A . G 4 HOH 48 251 251 HOH HOH A . G 4 HOH 49 252 252 HOH HOH A . G 4 HOH 50 253 253 HOH HOH A . G 4 HOH 51 254 254 HOH HOH A . G 4 HOH 52 255 255 HOH HOH A . G 4 HOH 53 256 256 HOH HOH A . G 4 HOH 54 257 257 HOH HOH A . G 4 HOH 55 258 258 HOH HOH A . G 4 HOH 56 259 259 HOH HOH A . G 4 HOH 57 260 260 HOH HOH A . G 4 HOH 58 261 261 HOH HOH A . G 4 HOH 59 262 262 HOH HOH A . G 4 HOH 60 263 263 HOH HOH A . G 4 HOH 61 264 264 HOH HOH A . G 4 HOH 62 265 265 HOH HOH A . G 4 HOH 63 266 266 HOH HOH A . G 4 HOH 64 267 267 HOH HOH A . G 4 HOH 65 268 268 HOH HOH A . G 4 HOH 66 269 269 HOH HOH A . G 4 HOH 67 270 270 HOH HOH A . G 4 HOH 68 271 271 HOH HOH A . G 4 HOH 69 272 272 HOH HOH A . G 4 HOH 70 273 273 HOH HOH A . G 4 HOH 71 274 274 HOH HOH A . G 4 HOH 72 275 275 HOH HOH A . G 4 HOH 73 276 276 HOH HOH A . G 4 HOH 74 277 277 HOH HOH A . G 4 HOH 75 278 278 HOH HOH A . G 4 HOH 76 279 279 HOH HOH A . G 4 HOH 77 280 280 HOH HOH A . G 4 HOH 78 281 281 HOH HOH A . G 4 HOH 79 282 282 HOH HOH A . G 4 HOH 80 283 283 HOH HOH A . G 4 HOH 81 284 284 HOH HOH A . G 4 HOH 82 285 285 HOH HOH A . G 4 HOH 83 286 286 HOH HOH A . G 4 HOH 84 287 287 HOH HOH A . G 4 HOH 85 288 288 HOH HOH A . G 4 HOH 86 289 289 HOH HOH A . G 4 HOH 87 290 290 HOH HOH A . G 4 HOH 88 291 291 HOH HOH A . G 4 HOH 89 292 292 HOH HOH A . G 4 HOH 90 293 293 HOH HOH A . G 4 HOH 91 294 294 HOH HOH A . G 4 HOH 92 295 295 HOH HOH A . G 4 HOH 93 296 296 HOH HOH A . G 4 HOH 94 297 297 HOH HOH A . G 4 HOH 95 298 298 HOH HOH A . G 4 HOH 96 299 299 HOH HOH A . G 4 HOH 97 300 300 HOH HOH A . G 4 HOH 98 301 301 HOH HOH A . G 4 HOH 99 302 302 HOH HOH A . G 4 HOH 100 303 303 HOH HOH A . G 4 HOH 101 304 304 HOH HOH A . G 4 HOH 102 305 305 HOH HOH A . G 4 HOH 103 306 306 HOH HOH A . G 4 HOH 104 307 307 HOH HOH A . G 4 HOH 105 308 308 HOH HOH A . G 4 HOH 106 309 309 HOH HOH A . G 4 HOH 107 310 310 HOH HOH A . G 4 HOH 108 311 311 HOH HOH A . G 4 HOH 109 312 312 HOH HOH A . G 4 HOH 110 313 313 HOH HOH A . G 4 HOH 111 314 314 HOH HOH A . G 4 HOH 112 315 315 HOH HOH A . H 4 HOH 1 205 205 HOH HOH B . H 4 HOH 2 206 206 HOH HOH B . H 4 HOH 3 207 207 HOH HOH B . H 4 HOH 4 208 208 HOH HOH B . H 4 HOH 5 209 209 HOH HOH B . H 4 HOH 6 210 210 HOH HOH B . H 4 HOH 7 211 211 HOH HOH B . H 4 HOH 8 212 212 HOH HOH B . H 4 HOH 9 213 213 HOH HOH B . H 4 HOH 10 214 214 HOH HOH B . H 4 HOH 11 215 215 HOH HOH B . H 4 HOH 12 216 216 HOH HOH B . H 4 HOH 13 217 217 HOH HOH B . H 4 HOH 14 218 218 HOH HOH B . H 4 HOH 15 219 219 HOH HOH B . H 4 HOH 16 220 220 HOH HOH B . H 4 HOH 17 221 221 HOH HOH B . H 4 HOH 18 222 222 HOH HOH B . H 4 HOH 19 223 223 HOH HOH B . H 4 HOH 20 224 224 HOH HOH B . H 4 HOH 21 225 225 HOH HOH B . H 4 HOH 22 226 226 HOH HOH B . H 4 HOH 23 227 227 HOH HOH B . H 4 HOH 24 228 228 HOH HOH B . H 4 HOH 25 229 229 HOH HOH B . H 4 HOH 26 230 230 HOH HOH B . H 4 HOH 27 231 231 HOH HOH B . H 4 HOH 28 232 232 HOH HOH B . H 4 HOH 29 233 233 HOH HOH B . H 4 HOH 30 234 234 HOH HOH B . H 4 HOH 31 235 235 HOH HOH B . H 4 HOH 32 236 236 HOH HOH B . H 4 HOH 33 237 237 HOH HOH B . H 4 HOH 34 238 238 HOH HOH B . H 4 HOH 35 239 239 HOH HOH B . H 4 HOH 36 240 240 HOH HOH B . H 4 HOH 37 241 241 HOH HOH B . H 4 HOH 38 242 242 HOH HOH B . H 4 HOH 39 243 243 HOH HOH B . H 4 HOH 40 244 244 HOH HOH B . H 4 HOH 41 245 245 HOH HOH B . H 4 HOH 42 246 246 HOH HOH B . H 4 HOH 43 247 247 HOH HOH B . H 4 HOH 44 248 248 HOH HOH B . H 4 HOH 45 249 249 HOH HOH B . H 4 HOH 46 250 250 HOH HOH B . H 4 HOH 47 251 251 HOH HOH B . H 4 HOH 48 252 252 HOH HOH B . H 4 HOH 49 253 253 HOH HOH B . H 4 HOH 50 254 254 HOH HOH B . H 4 HOH 51 255 255 HOH HOH B . H 4 HOH 52 256 256 HOH HOH B . H 4 HOH 53 257 257 HOH HOH B . H 4 HOH 54 258 258 HOH HOH B . H 4 HOH 55 259 259 HOH HOH B . H 4 HOH 56 260 260 HOH HOH B . H 4 HOH 57 261 261 HOH HOH B . H 4 HOH 58 262 262 HOH HOH B . H 4 HOH 59 263 263 HOH HOH B . H 4 HOH 60 264 264 HOH HOH B . H 4 HOH 61 265 265 HOH HOH B . H 4 HOH 62 266 266 HOH HOH B . H 4 HOH 63 267 267 HOH HOH B . H 4 HOH 64 268 268 HOH HOH B . H 4 HOH 65 269 269 HOH HOH B . H 4 HOH 66 270 270 HOH HOH B . H 4 HOH 67 271 271 HOH HOH B . H 4 HOH 68 272 272 HOH HOH B . H 4 HOH 69 273 273 HOH HOH B . H 4 HOH 70 274 274 HOH HOH B . H 4 HOH 71 275 275 HOH HOH B . H 4 HOH 72 276 276 HOH HOH B . H 4 HOH 73 277 277 HOH HOH B . H 4 HOH 74 278 278 HOH HOH B . H 4 HOH 75 279 279 HOH HOH B . H 4 HOH 76 280 280 HOH HOH B . H 4 HOH 77 281 281 HOH HOH B . H 4 HOH 78 282 282 HOH HOH B . H 4 HOH 79 283 283 HOH HOH B . H 4 HOH 80 284 284 HOH HOH B . H 4 HOH 81 285 285 HOH HOH B . H 4 HOH 82 286 286 HOH HOH B . H 4 HOH 83 287 287 HOH HOH B . H 4 HOH 84 288 288 HOH HOH B . H 4 HOH 85 289 289 HOH HOH B . H 4 HOH 86 290 290 HOH HOH B . H 4 HOH 87 291 291 HOH HOH B . H 4 HOH 88 292 292 HOH HOH B . H 4 HOH 89 293 293 HOH HOH B . H 4 HOH 90 295 295 HOH HOH B . H 4 HOH 91 296 296 HOH HOH B . H 4 HOH 92 297 297 HOH HOH B . H 4 HOH 93 298 298 HOH HOH B . H 4 HOH 94 299 299 HOH HOH B . H 4 HOH 95 300 300 HOH HOH B . H 4 HOH 96 301 301 HOH HOH B . H 4 HOH 97 302 302 HOH HOH B . H 4 HOH 98 303 303 HOH HOH B . H 4 HOH 99 304 304 HOH HOH B . H 4 HOH 100 305 305 HOH HOH B . H 4 HOH 101 306 306 HOH HOH B . H 4 HOH 102 307 307 HOH HOH B . H 4 HOH 103 308 308 HOH HOH B . H 4 HOH 104 309 309 HOH HOH B . H 4 HOH 105 310 310 HOH HOH B . H 4 HOH 106 311 311 HOH HOH B . H 4 HOH 107 312 312 HOH HOH B . H 4 HOH 108 313 313 HOH HOH B . H 4 HOH 109 314 314 HOH HOH B . H 4 HOH 110 315 315 HOH HOH B . H 4 HOH 111 316 316 HOH HOH B . H 4 HOH 112 317 317 HOH HOH B . H 4 HOH 113 318 318 HOH HOH B . H 4 HOH 114 319 319 HOH HOH B . H 4 HOH 115 320 320 HOH HOH B . H 4 HOH 116 321 321 HOH HOH B . H 4 HOH 117 322 322 HOH HOH B . H 4 HOH 118 323 323 HOH HOH B . H 4 HOH 119 324 324 HOH HOH B . H 4 HOH 120 325 325 HOH HOH B . H 4 HOH 121 326 326 HOH HOH B . H 4 HOH 122 327 327 HOH HOH B . H 4 HOH 123 328 328 HOH HOH B . H 4 HOH 124 329 329 HOH HOH B . H 4 HOH 125 330 330 HOH HOH B . H 4 HOH 126 331 331 HOH HOH B . H 4 HOH 127 332 332 HOH HOH B . H 4 HOH 128 333 333 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 author_defined_assembly ? hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2,3 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3030 ? 1 MORE -40 ? 1 'SSA (A^2)' 12850 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 70.1530000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 35.0765000000 -0.8660254038 -0.5000000000 0.0000000000 60.7542801517 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 282 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1B ? C GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O1A ? C GDP . ? A GDP 201 ? 1_555 81.9 ? 2 O1B ? C GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 240 ? 1_555 141.2 ? 3 O1A ? C GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 240 ? 1_555 85.8 ? 4 O1B ? C GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 308 ? 1_555 90.6 ? 5 O1A ? C GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 308 ? 1_555 172.5 ? 6 O ? G HOH . ? A HOH 240 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? G HOH . ? A HOH 308 ? 1_555 100.3 ? 7 O1B ? E GDP . ? B GDP 202 ? 1_555 MG ? F MG . ? B MG 204 ? 1_555 O1A ? E GDP . ? B GDP 202 ? 1_555 77.6 ? 8 O1B ? E GDP . ? B GDP 202 ? 1_555 MG ? F MG . ? B MG 204 ? 1_555 O ? H HOH . ? B HOH 306 ? 1_555 135.2 ? 9 O1A ? E GDP . ? B GDP 202 ? 1_555 MG ? F MG . ? B MG 204 ? 1_555 O ? H HOH . ? B HOH 306 ? 1_555 81.3 ? 10 O1B ? E GDP . ? B GDP 202 ? 1_555 MG ? F MG . ? B MG 204 ? 1_555 O ? H HOH . ? B HOH 322 ? 1_555 90.9 ? 11 O1A ? E GDP . ? B GDP 202 ? 1_555 MG ? F MG . ? B MG 204 ? 1_555 O ? H HOH . ? B HOH 322 ? 1_555 166.8 ? 12 O ? H HOH . ? B HOH 306 ? 1_555 MG ? F MG . ? B MG 204 ? 1_555 O ? H HOH . ? B HOH 322 ? 1_555 103.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-04-04 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 4 'Structure model' '_struct_ref_seq_dif.details' 20 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AMoRE phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3EJM _pdbx_entry_details.sequence_details 'RESIDUES 91 TO 94 [NILT] REPLACED WITH [NTNPLASA]' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 29 ? ? 82.61 23.48 2 1 LYS A 40 ? ? -161.96 117.78 3 1 LEU A 114 ? ? 70.42 -33.36 4 1 LEU B 114 ? ? 74.16 -40.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR -4 ? A TYR 1 2 1 Y 1 A LYS -3 ? A LYS 2 3 1 Y 1 A LYS -2 ? A LYS 3 4 1 Y 1 A ALA -1 ? A ALA 4 5 1 Y 1 A GLY 0 ? A GLY 5 6 1 Y 1 A THR 135 ? A THR 140 7 1 Y 1 A LYS 136 ? A LYS 141 8 1 Y 1 A MET 137 ? A MET 142 9 1 Y 1 A GLU 138 ? A GLU 143 10 1 Y 1 A THR 139 ? A THR 144 11 1 Y 1 A ASP 140 ? A ASP 145 12 1 Y 1 A ASN 141 ? A ASN 146 13 1 Y 1 B TYR -4 ? B TYR 1 14 1 Y 1 B LYS -3 ? B LYS 2 15 1 Y 1 B LYS -2 ? B LYS 3 16 1 Y 1 B ALA -1 ? B ALA 4 17 1 Y 1 B GLY 0 ? B GLY 5 18 1 Y 1 B THR 135 ? B THR 140 19 1 Y 1 B LYS 136 ? B LYS 141 20 1 Y 1 B MET 137 ? B MET 142 21 1 Y 1 B GLU 138 ? B GLU 143 22 1 Y 1 B THR 139 ? B THR 144 23 1 Y 1 B ASP 140 ? B ASP 145 24 1 Y 1 B ASN 141 ? B ASN 146 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GDP PB P N N 88 GDP O1B O N N 89 GDP O2B O N N 90 GDP O3B O N N 91 GDP O3A O N N 92 GDP PA P N N 93 GDP O1A O N N 94 GDP O2A O N N 95 GDP "O5'" O N N 96 GDP "C5'" C N N 97 GDP "C4'" C N R 98 GDP "O4'" O N N 99 GDP "C3'" C N S 100 GDP "O3'" O N N 101 GDP "C2'" C N R 102 GDP "O2'" O N N 103 GDP "C1'" C N R 104 GDP N9 N Y N 105 GDP C8 C Y N 106 GDP N7 N Y N 107 GDP C5 C Y N 108 GDP C6 C N N 109 GDP O6 O N N 110 GDP N1 N N N 111 GDP C2 C N N 112 GDP N2 N N N 113 GDP N3 N N N 114 GDP C4 C Y N 115 GDP HOB2 H N N 116 GDP HOB3 H N N 117 GDP HOA2 H N N 118 GDP "H5'" H N N 119 GDP "H5''" H N N 120 GDP "H4'" H N N 121 GDP "H3'" H N N 122 GDP "HO3'" H N N 123 GDP "H2'" H N N 124 GDP "HO2'" H N N 125 GDP "H1'" H N N 126 GDP H8 H N N 127 GDP HN1 H N N 128 GDP HN21 H N N 129 GDP HN22 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 MG MG MG N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GDP PB O1B doub N N 83 GDP PB O2B sing N N 84 GDP PB O3B sing N N 85 GDP PB O3A sing N N 86 GDP O2B HOB2 sing N N 87 GDP O3B HOB3 sing N N 88 GDP O3A PA sing N N 89 GDP PA O1A doub N N 90 GDP PA O2A sing N N 91 GDP PA "O5'" sing N N 92 GDP O2A HOA2 sing N N 93 GDP "O5'" "C5'" sing N N 94 GDP "C5'" "C4'" sing N N 95 GDP "C5'" "H5'" sing N N 96 GDP "C5'" "H5''" sing N N 97 GDP "C4'" "O4'" sing N N 98 GDP "C4'" "C3'" sing N N 99 GDP "C4'" "H4'" sing N N 100 GDP "O4'" "C1'" sing N N 101 GDP "C3'" "O3'" sing N N 102 GDP "C3'" "C2'" sing N N 103 GDP "C3'" "H3'" sing N N 104 GDP "O3'" "HO3'" sing N N 105 GDP "C2'" "O2'" sing N N 106 GDP "C2'" "C1'" sing N N 107 GDP "C2'" "H2'" sing N N 108 GDP "O2'" "HO2'" sing N N 109 GDP "C1'" N9 sing N N 110 GDP "C1'" "H1'" sing N N 111 GDP N9 C8 sing Y N 112 GDP N9 C4 sing Y N 113 GDP C8 N7 doub Y N 114 GDP C8 H8 sing N N 115 GDP N7 C5 sing Y N 116 GDP C5 C6 sing N N 117 GDP C5 C4 doub Y N 118 GDP C6 O6 doub N N 119 GDP C6 N1 sing N N 120 GDP N1 C2 sing N N 121 GDP N1 HN1 sing N N 122 GDP C2 N2 sing N N 123 GDP C2 N3 doub N N 124 GDP N2 HN21 sing N N 125 GDP N2 HN22 sing N N 126 GDP N3 C4 sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2B8P _pdbx_initial_refinement_model.details ? #