HEADER LYASE 19-SEP-08 3EKA TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF HYALURANIDASE TRIMER WITH ASCORBIC TITLE 2 ACID AT 3.1 A RESOLUTION REVEALS THE LOCATIONS OF THREE BINDING SITES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYALURONIDASE, PHAGE ASSOCIATED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 7-338; COMPND 5 EC: 4.2.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: HYLP1, HYLP2, SPY_0701; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21D KEYWDS ASCORBIC ACID COMPLEX, LYASE, HYALURONAN LYASE, PHAGE TAIL FIBRE, KEYWDS 2 TRIPLE-STRANDED EXPDTA X-RAY DIFFRACTION AUTHOR P.MISHRA,A.S.ETHAYATHULLA,R.PREM KUMAR,N.SINGH,S.SHARMA,P.KAUR, AUTHOR 2 V.BHAKUNI,T.P.SINGH REVDAT 3 01-NOV-23 3EKA 1 HETSYN REVDAT 2 29-JUL-20 3EKA 1 REMARK SEQADV SITE REVDAT 1 29-SEP-09 3EKA 0 SPRSDE 29-SEP-09 3EKA 2PK1 JRNL AUTH P.MISHRA,R.PREM KUMAR,A.S.ETHAYATHULLA,N.SINGH,S.SHARMA, JRNL AUTH 2 M.PERBANDT,C.BETZEL,P.KAUR,A.SRINIVASAN,V.BHAKUNI,T.P.SINGH JRNL TITL POLYSACCHARIDE BINDING SITES IN HYALURONATE LYASE--CRYSTAL JRNL TITL 2 STRUCTURES OF NATIVE PHAGE-ENCODED HYALURONATE LYASE AND ITS JRNL TITL 3 COMPLEXES WITH ASCORBIC ACID AND LACTOSE. JRNL REF FEBS J. V. 276 3392 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19438710 JRNL DOI 10.1111/J.1742-4658.2009.07065.X REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 6358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 446 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2515 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.68000 REMARK 3 B22 (A**2) : 4.68000 REMARK 3 B33 (A**2) : -7.02000 REMARK 3 B12 (A**2) : 2.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.619 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.362 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.100 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2585 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3487 ; 2.311 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 8.095 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;46.545 ;25.472 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;20.869 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;25.745 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1919 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1041 ; 0.308 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1761 ; 0.332 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 98 ; 0.225 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 588 ; 0.300 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 94 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1684 ; 1.672 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2620 ; 2.125 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1023 ; 3.137 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 867 ; 4.489 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 203.0 REMARK 200 PH : 7.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.803 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALEPACK REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6874 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43400 REMARK 200 FOR SHELL : 2.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2C3F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL, SODIUM FORMATE, PH 7.80, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 29.25100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 16.88807 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 194.51333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 29.25100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 16.88807 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 194.51333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 29.25100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 16.88807 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 194.51333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 29.25100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 16.88807 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 194.51333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 29.25100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 16.88807 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 194.51333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 29.25100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 16.88807 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 194.51333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 33.77615 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 389.02667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 33.77615 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 389.02667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 33.77615 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 389.02667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 33.77615 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 389.02667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 33.77615 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 389.02667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 33.77615 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 389.02667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -211.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 58.50200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 29.25100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 50.66422 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 384 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 386 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 119 CE LYS A 119 NZ 0.171 REMARK 500 PRO A 120 CD PRO A 120 N 0.129 REMARK 500 SER A 127 N SER A 127 CA 0.187 REMARK 500 PRO A 195 CD PRO A 195 N 0.085 REMARK 500 HIS A 338 N HIS A 338 CA 0.192 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 120 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 PRO A 120 N - CD - CG ANGL. DEV. = -12.3 DEGREES REMARK 500 SER A 127 C - N - CA ANGL. DEV. = -16.5 DEGREES REMARK 500 SER A 127 N - CA - CB ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG A 216 CD - NE - CZ ANGL. DEV. = -11.2 DEGREES REMARK 500 PRO A 311 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS A 336 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 LYS A 337 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 HIS A 338 N - CA - CB ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 138.90 -38.65 REMARK 500 ALA A 20 -11.62 -44.71 REMARK 500 LEU A 27 158.88 -48.95 REMARK 500 HIS A 46 12.19 -160.99 REMARK 500 PRO A 57 155.52 -43.13 REMARK 500 LEU A 58 57.65 -150.37 REMARK 500 THR A 90 -13.04 -32.35 REMARK 500 GLN A 99 -47.68 -29.81 REMARK 500 ALA A 122 51.61 77.41 REMARK 500 THR A 123 -67.40 -15.45 REMARK 500 TYR A 126 82.87 36.74 REMARK 500 SER A 127 154.98 -46.29 REMARK 500 SER A 129 22.45 80.12 REMARK 500 PRO A 195 161.48 -31.27 REMARK 500 ASP A 239 30.51 -85.25 REMARK 500 LYS A 240 -23.25 -38.21 REMARK 500 ASN A 254 58.11 82.51 REMARK 500 ASP A 303 99.58 -67.24 REMARK 500 ASP A 310 149.18 -38.01 REMARK 500 THR A 312 -55.29 -143.94 REMARK 500 LEU A 335 48.20 -58.82 REMARK 500 LYS A 337 48.71 160.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 194 PRO A 195 -147.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 216 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YVV RELATED DB: PDB REMARK 900 HYALURANIDASE COMPLEX WITH LACTOSE REMARK 900 RELATED ID: 2YW0 RELATED DB: PDB REMARK 900 HYALURANIDASE NATIVE STRUCTURE DBREF 3EKA A 7 337 UNP Q9A0M7 Q9A0M7_STRP1 7 337 SEQADV 3EKA HIS A 338 UNP Q9A0M7 EXPRESSION TAG SEQRES 1 A 332 LEU ARG VAL GLN PHE LYS ARG MET LYS ALA ALA GLU TRP SEQRES 2 A 332 ALA ARG SER ASP VAL ILE LEU LEU GLU SER GLU ILE GLY SEQRES 3 A 332 PHE GLU THR ASP THR GLY PHE ALA ARG ALA GLY ASP GLY SEQRES 4 A 332 HIS ASN ARG PHE SER ASP LEU GLY TYR ILE SER PRO LEU SEQRES 5 A 332 ASP TYR ASN LEU LEU THR ASN LYS PRO ASN ILE ASP GLY SEQRES 6 A 332 LEU ALA THR LYS VAL GLU THR ALA GLN LYS LEU GLN GLN SEQRES 7 A 332 LYS ALA ASP LYS GLU THR VAL TYR THR LYS ALA GLU SER SEQRES 8 A 332 LYS GLN GLU LEU ASP LYS LYS LEU ASN LEU LYS GLY GLY SEQRES 9 A 332 VAL MET THR GLY GLN LEU LYS PHE LYS PRO ALA ALA THR SEQRES 10 A 332 VAL ALA TYR SER SER SER THR GLY GLY ALA VAL ASN ILE SEQRES 11 A 332 ASP LEU SER SER THR ARG GLY ALA GLY VAL VAL VAL TYR SEQRES 12 A 332 SER ASP ASN ASP THR SER ASP GLY PRO LEU MET SER LEU SEQRES 13 A 332 ARG THR GLY LYS GLU THR PHE ASN GLN SER ALA LEU PHE SEQRES 14 A 332 VAL ASP TYR LYS GLY THR THR ASN ALA VAL ASN ILE ALA SEQRES 15 A 332 MET ARG GLN PRO THR THR PRO ASN PHE SER SER ALA LEU SEQRES 16 A 332 ASN ILE THR SER GLY ASN GLU ASN GLY SER ALA MET GLN SEQRES 17 A 332 LEU ARG GLY SER GLU LYS ALA LEU GLY THR LEU LYS ILE SEQRES 18 A 332 THR HIS GLU ASN PRO SER ILE GLY ALA ASP TYR ASP LYS SEQRES 19 A 332 ASN ALA ALA ALA LEU SER ILE ASP ILE VAL LYS LYS THR SEQRES 20 A 332 ASN GLY ALA GLY THR ALA ALA GLN GLY ILE TYR ILE ASN SEQRES 21 A 332 SER THR SER GLY THR THR GLY LYS LEU LEU ARG ILE ARG SEQRES 22 A 332 ASN LEU SER ASP ASP LYS PHE TYR VAL LYS SER ASP GLY SEQRES 23 A 332 GLY PHE TYR ALA LYS GLU THR SER GLN ILE ASP GLY ASN SEQRES 24 A 332 LEU LYS LEU LYS ASP PRO THR ALA ASN ASP HIS ALA ALA SEQRES 25 A 332 THR LYS ALA TYR VAL ASP LYS ALA ILE SER GLU LEU LYS SEQRES 26 A 332 LYS LEU ILE LEU LYS LYS HIS HET ASC A 1 12 HET ASC A 2 12 HET ASC A 3 12 HETNAM ASC ASCORBIC ACID HETSYN ASC VITAMIN C FORMUL 2 ASC 3(C6 H8 O6) FORMUL 5 HOH *62(H2 O) HELIX 1 1 LYS A 15 ALA A 20 1 6 HELIX 2 2 ARG A 48 LEU A 52 5 5 HELIX 3 3 ASP A 59 LEU A 63 5 5 HELIX 4 4 THR A 74 GLN A 84 1 11 HELIX 5 5 THR A 93 ASP A 102 1 10 HELIX 6 6 THR A 319 LEU A 335 1 17 SHEET 1 A 3 LYS A 12 MET A 14 0 SHEET 2 A 3 ILE A 31 GLU A 34 1 O PHE A 33 N LYS A 12 SHEET 3 A 3 ALA A 40 ALA A 42 -1 O ARG A 41 N GLY A 32 SHEET 1 B 3 LEU A 276 ARG A 279 0 SHEET 2 B 3 ASP A 284 VAL A 288 -1 O VAL A 288 N LEU A 276 SHEET 3 B 3 PHE A 294 ALA A 296 -1 O TYR A 295 N TYR A 287 CRYST1 58.502 58.502 583.540 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017093 0.009869 0.000000 0.00000 SCALE2 0.000000 0.019738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001714 0.00000