HEADER HYDROLASE 19-SEP-08 3EL0 TITLE CRYSTAL STRUCTURE OF THE INHIBITOR NELFINAVIR (NFV) IN COMPLEX WITH A TITLE 2 MULTI-DRUG RESISTANT HIV-1 PROTEASE VARIANT TITLE 3 (L10I/G48V/I54V/V64I/V82A) (REFER: FLAP+ IN CITATION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 491-589; COMPND 5 SYNONYM: RETROPEPSIN, PR; COMPND 6 EC: 3.4.23.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIV-1 M:B_ARV2/SF2; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11685; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TAP106; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC35 KEYWDS HIV-1, PROTEASE, MULTI-DRUG RESISTANCE, NELFINAVIR, AIDS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PRABU-JEYABALAN,N.M.KING REVDAT 5 21-FEB-24 3EL0 1 REMARK REVDAT 4 20-OCT-21 3EL0 1 REMARK SEQADV REVDAT 3 17-OCT-12 3EL0 1 JRNL REVDAT 2 13-JUL-11 3EL0 1 VERSN REVDAT 1 01-SEP-09 3EL0 0 JRNL AUTH N.M.KING,M.PRABU-JEYABALAN,R.M.BANDARANAYAKE,M.N.NALAM, JRNL AUTH 2 E.A.NALIVAIKA,A.OZEN,N.K.YILMAZ,C.A.SCHIFFER JRNL TITL EXTREME ENTROPY-ENTHALPY COMPENSATION IN A DRUG-RESISTANT JRNL TITL 2 VARIANT OF HIV-1 PROTEASE. JRNL REF ACS CHEM.BIOL. V. 7 1536 2012 JRNL REFN ISSN 1554-8929 JRNL PMID 22712830 JRNL DOI 10.1021/CB300191K REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 12104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 591 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 790 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1483 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.92000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : 2.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.248 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.757 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1609 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1563 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2191 ; 1.166 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3623 ; 1.271 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 6.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;40.179 ;24.464 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;14.180 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.356 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1760 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 291 ; 0.034 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 219 ; 0.292 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1483 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 728 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 922 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.260 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.276 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 76 ; 0.331 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1307 ; 0.931 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 416 ; 0.116 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1632 ; 0.978 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 668 ; 1.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 559 ; 2.242 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 RESIDUE RANGE : B 1 B 5 REMARK 3 RESIDUE RANGE : A 94 A 99 REMARK 3 RESIDUE RANGE : B 94 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1048 8.5516 2.1228 REMARK 3 T TENSOR REMARK 3 T11: -0.0324 T22: -0.0091 REMARK 3 T33: -0.0333 T12: 0.0045 REMARK 3 T13: -0.0249 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.7734 L22: 1.4624 REMARK 3 L33: 1.7538 L12: 1.1984 REMARK 3 L13: 0.6903 L23: 1.3964 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: 0.2445 S13: 0.1846 REMARK 3 S21: -0.1425 S22: -0.0852 S23: 0.0509 REMARK 3 S31: -0.1545 S32: -0.0449 S33: 0.0127 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1206 4.0155 12.9456 REMARK 3 T TENSOR REMARK 3 T11: -0.0484 T22: 0.0170 REMARK 3 T33: -0.0057 T12: -0.0150 REMARK 3 T13: 0.0025 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.6542 L22: 1.6389 REMARK 3 L33: 0.2292 L12: -1.2167 REMARK 3 L13: -0.3788 L23: -0.0470 REMARK 3 S TENSOR REMARK 3 S11: -0.1341 S12: -0.1123 S13: -0.0642 REMARK 3 S21: -0.0688 S22: 0.0415 S23: 0.0238 REMARK 3 S31: -0.2553 S32: -0.0493 S33: 0.0926 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 31 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1102 0.0731 9.9565 REMARK 3 T TENSOR REMARK 3 T11: -0.0641 T22: -0.0117 REMARK 3 T33: -0.0130 T12: -0.0126 REMARK 3 T13: -0.0122 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 6.9516 L22: 4.2954 REMARK 3 L33: 1.6070 L12: -1.2847 REMARK 3 L13: -3.1346 L23: 1.4147 REMARK 3 S TENSOR REMARK 3 S11: -0.2204 S12: -0.0493 S13: -0.2134 REMARK 3 S21: -0.2426 S22: 0.1893 S23: 0.1101 REMARK 3 S31: 0.1526 S32: -0.0032 S33: 0.0311 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5564 -1.2406 27.0442 REMARK 3 T TENSOR REMARK 3 T11: -0.0448 T22: -0.0133 REMARK 3 T33: -0.0120 T12: 0.0020 REMARK 3 T13: 0.0253 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 14.7503 L22: 4.3427 REMARK 3 L33: 1.1266 L12: 6.1423 REMARK 3 L13: -0.9947 L23: 0.9610 REMARK 3 S TENSOR REMARK 3 S11: -0.0900 S12: -0.2328 S13: 0.0251 REMARK 3 S21: -0.1426 S22: 0.0066 S23: 0.3895 REMARK 3 S31: 0.0260 S32: -0.2221 S33: 0.0834 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 55 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2500 -10.6811 19.5318 REMARK 3 T TENSOR REMARK 3 T11: -0.0913 T22: -0.0176 REMARK 3 T33: -0.0242 T12: -0.0230 REMARK 3 T13: 0.0081 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 6.1034 L22: 5.3375 REMARK 3 L33: 2.9569 L12: 1.4797 REMARK 3 L13: 0.2188 L23: 0.0409 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: -0.1954 S13: 0.0855 REMARK 3 S21: 0.0958 S22: 0.0780 S23: 0.3517 REMARK 3 S31: -0.0876 S32: 0.2085 S33: -0.0382 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8425 -5.1324 17.1263 REMARK 3 T TENSOR REMARK 3 T11: -0.0290 T22: 0.0511 REMARK 3 T33: 0.0479 T12: -0.0250 REMARK 3 T13: -0.0075 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.2598 L22: 5.2043 REMARK 3 L33: 3.3527 L12: -1.1594 REMARK 3 L13: 0.1199 L23: -0.2135 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: 0.0239 S13: -0.2189 REMARK 3 S21: -0.0158 S22: 0.1003 S23: 0.5283 REMARK 3 S31: 0.0887 S32: -0.1328 S33: -0.2567 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8898 -1.0239 20.0446 REMARK 3 T TENSOR REMARK 3 T11: -0.0016 T22: 0.1108 REMARK 3 T33: 0.0438 T12: -0.0324 REMARK 3 T13: 0.0072 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.0731 L22: 5.4853 REMARK 3 L33: 5.4086 L12: 0.2479 REMARK 3 L13: -0.5197 L23: -4.4808 REMARK 3 S TENSOR REMARK 3 S11: 0.0922 S12: -0.5609 S13: -0.0168 REMARK 3 S21: 0.8235 S22: -0.3422 S23: 0.1286 REMARK 3 S31: -0.6245 S32: 0.5007 S33: 0.2500 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5114 9.2537 11.5786 REMARK 3 T TENSOR REMARK 3 T11: -0.0316 T22: 0.0098 REMARK 3 T33: -0.0103 T12: 0.0052 REMARK 3 T13: -0.0127 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 5.0711 L22: 2.3463 REMARK 3 L33: 0.9230 L12: -0.0973 REMARK 3 L13: -0.5570 L23: 1.4321 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: -0.0959 S13: 0.1825 REMARK 3 S21: 0.0874 S22: 0.1038 S23: -0.1215 REMARK 3 S31: 0.0059 S32: -0.0102 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7585 -0.6527 4.7563 REMARK 3 T TENSOR REMARK 3 T11: -0.0673 T22: 0.0185 REMARK 3 T33: 0.0101 T12: -0.0136 REMARK 3 T13: -0.0315 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.8261 L22: 3.9584 REMARK 3 L33: 2.8375 L12: -1.0276 REMARK 3 L13: -2.2095 L23: 0.4986 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.2158 S13: -0.2041 REMARK 3 S21: 0.0355 S22: 0.0915 S23: 0.0278 REMARK 3 S31: 0.0584 S32: -0.1435 S33: -0.0210 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3187 -1.2144 17.1993 REMARK 3 T TENSOR REMARK 3 T11: -0.0581 T22: 0.0232 REMARK 3 T33: 0.0075 T12: -0.0190 REMARK 3 T13: 0.0024 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 5.4249 L22: 17.6938 REMARK 3 L33: 3.5158 L12: 9.2672 REMARK 3 L13: 2.1608 L23: 1.4671 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: -0.4871 S13: 0.2802 REMARK 3 S21: 0.2841 S22: -0.0388 S23: -0.1617 REMARK 3 S31: -0.0165 S32: -0.3707 S33: -0.0422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 133 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.53650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.54800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.24200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.54800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.53650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.24200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 VAL A 48 CG1 CG2 REMARK 470 ILE B 15 CD1 REMARK 470 LEU B 19 CG CD1 CD2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 TRP B 42 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 42 CZ3 CH2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 35 110.83 -12.62 REMARK 500 PRO B 79 71.55 -66.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1UN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EKP RELATED DB: PDB REMARK 900 RELATED ID: 3EKQ RELATED DB: PDB REMARK 900 RELATED ID: 3EKV RELATED DB: PDB REMARK 900 RELATED ID: 3EKW RELATED DB: PDB REMARK 900 RELATED ID: 3EKX RELATED DB: PDB REMARK 900 RELATED ID: 3EKY RELATED DB: PDB REMARK 900 RELATED ID: 3EKT RELATED DB: PDB REMARK 900 RELATED ID: 3EL1 RELATED DB: PDB REMARK 900 RELATED ID: 3EL4 RELATED DB: PDB REMARK 900 RELATED ID: 3EL5 RELATED DB: PDB DBREF 3EL0 A 1 99 UNP P03369 POL_HV1A2 491 589 DBREF 3EL0 B 1 99 UNP P03369 POL_HV1A2 491 589 SEQADV 3EL0 LYS A 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 3EL0 ILE A 10 UNP P03369 LEU 500 ENGINEERED MUTATION SEQADV 3EL0 VAL A 48 UNP P03369 GLY 538 ENGINEERED MUTATION SEQADV 3EL0 VAL A 54 UNP P03369 ILE 544 ENGINEERED MUTATION SEQADV 3EL0 ILE A 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 3EL0 ALA A 82 UNP P03369 VAL 572 ENGINEERED MUTATION SEQADV 3EL0 LYS B 7 UNP P03369 GLN 497 ENGINEERED MUTATION SEQADV 3EL0 ILE B 10 UNP P03369 LEU 500 ENGINEERED MUTATION SEQADV 3EL0 VAL B 48 UNP P03369 GLY 538 ENGINEERED MUTATION SEQADV 3EL0 VAL B 54 UNP P03369 ILE 544 ENGINEERED MUTATION SEQADV 3EL0 ILE B 64 UNP P03369 VAL 554 ENGINEERED MUTATION SEQADV 3EL0 ALA B 82 UNP P03369 VAL 572 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO ILE VAL THR ILE SEQRES 2 A 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 A 99 GLY LYS TRP LYS PRO LYS MET ILE VAL GLY ILE GLY GLY SEQRES 5 A 99 PHE VAL LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 A 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP LYS ARG PRO ILE VAL THR ILE SEQRES 2 B 99 ARG ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP THR VAL LEU GLU GLU MET ASN LEU PRO SEQRES 4 B 99 GLY LYS TRP LYS PRO LYS MET ILE VAL GLY ILE GLY GLY SEQRES 5 B 99 PHE VAL LYS VAL ARG GLN TYR ASP GLN ILE PRO ILE GLU SEQRES 6 B 99 ILE CYS GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 B 99 GLN ILE GLY CYS THR LEU ASN PHE HET 1UN A 201 40 HET PO4 A 501 5 HET PO4 A 502 5 HET ACT A 505 4 HET ACT A 506 4 HET ACT A 508 4 HET ACT B 504 4 HET ACT B 507 4 HETNAM 1UN 2-[2-HYDROXY-3-(3-HYDROXY-2-METHYL-BENZOYLAMINO)-4- HETNAM 2 1UN PHENYL SULFANYL-BUTYL]-DECAHYDRO-ISOQUINOLINE-3- HETNAM 3 1UN CARBOXYLIC ACID TERT-BUTYLAMIDE HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETSYN 1UN NELFINAVIR MESYLATE AG1343 FORMUL 3 1UN C32 H45 N3 O4 S FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 ACT 5(C2 H3 O2 1-) FORMUL 11 HOH *125(H2 O) HELIX 1 1 GLY A 86 THR A 91 1 6 HELIX 2 2 GLY B 86 THR B 91 1 6 SHEET 1 A 4 GLN A 2 ILE A 3 0 SHEET 2 A 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N ASN A 98 O THR B 96 SHEET 4 A 4 GLN B 2 ILE B 3 -1 O ILE B 3 N LEU A 97 SHEET 1 B 8 LYS A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O VAL A 56 N LYS A 45 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O HIS A 69 N ILE A 66 SHEET 4 B 8 VAL A 32 LEU A 33 1 N LEU A 33 O LEU A 76 SHEET 5 B 8 ILE A 84 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 ILE A 10 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N ARG A 14 SHEET 1 C 8 TRP B 42 GLY B 49 0 SHEET 2 C 8 GLY B 52 ILE B 66 -1 O VAL B 56 N LYS B 45 SHEET 3 C 8 HIS B 69 VAL B 77 -1 O HIS B 69 N ILE B 66 SHEET 4 C 8 THR B 31 LEU B 33 1 N LEU B 33 O LEU B 76 SHEET 5 C 8 ILE B 84 ILE B 85 -1 O ILE B 84 N VAL B 32 SHEET 6 C 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 7 C 8 ILE B 10 ILE B 15 -1 N ILE B 13 O LYS B 20 SHEET 8 C 8 GLY B 52 ILE B 66 -1 O GLU B 65 N ARG B 14 SITE 1 AC1 12 ASP A 25 GLY A 27 ALA A 28 ASP A 29 SITE 2 AC1 12 ASP A 30 ILE A 84 HOH A 546 ASP B 25 SITE 3 AC1 12 GLY B 27 ILE B 47 VAL B 48 ILE B 50 SITE 1 AC2 1 ARG A 8 SITE 1 AC3 1 GLN A 58 SITE 1 AC4 3 GLY A 94 THR A 96 HOH A 522 SITE 1 AC5 8 ARG A 14 GLY A 16 HOH A 528 HOH A 574 SITE 2 AC5 8 ARG B 14 PRO B 63 HOH B 530 HOH B 541 SITE 1 AC6 2 LYS A 7 ARG A 8 SITE 1 AC7 2 GLU B 21 ASN B 83 SITE 1 AC8 5 GLY B 73 THR B 74 ASN B 88 GLN B 92 SITE 2 AC8 5 HOH B 532 CRYST1 51.073 58.484 61.096 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019580 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017099 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016368 0.00000