HEADER TRANSCRIPTION REGULATOR 22-SEP-08 3ELK TITLE CRYSTAL STRUCTURE OF PUTATIVE TRANSCRIPTIONAL REGULATOR TA0346 FROM TITLE 2 THERMOPLASMA ACIDOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR TA0346; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 GENE: TA0346; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.GRANTZ SASKOVA,M.CHRUSZCZ,E.EVDOKIMOVA,O.EGOROVA,A.SAVCHENKO, AUTHOR 2 A.EDWARDS,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (MCSG) REVDAT 4 13-APR-22 3ELK 1 AUTHOR JRNL REMARK LINK REVDAT 3 13-JUL-11 3ELK 1 VERSN REVDAT 2 24-FEB-09 3ELK 1 VERSN REVDAT 1 30-SEP-08 3ELK 0 JRNL AUTH K.GRANTZ SASKOVA,M.CHRUSZCZ,E.EVDOKIMOVA,O.EGOROVA, JRNL AUTH 2 A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE TRANSCRIPTIONAL REGULATOR JRNL TITL 2 TA0346 FROM THERMOPLASMA ACIDOPHILUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 21126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1392 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.09000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -3.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1653 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1120 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2224 ; 2.033 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2766 ; 3.323 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 4.968 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;39.997 ;24.762 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 328 ;15.495 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 6.143 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1753 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 297 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1026 ; 1.104 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 424 ; 0.398 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1648 ; 1.881 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 627 ; 3.912 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 576 ; 5.282 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5930 1.2070 91.8470 REMARK 3 T TENSOR REMARK 3 T11: -0.1074 T22: -0.0693 REMARK 3 T33: -0.0155 T12: 0.0438 REMARK 3 T13: 0.0049 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.2910 L22: 2.1908 REMARK 3 L33: 6.7961 L12: -0.2169 REMARK 3 L13: -1.0207 L23: -1.3591 REMARK 3 S TENSOR REMARK 3 S11: 0.2020 S12: 0.0277 S13: 0.0995 REMARK 3 S21: 0.0779 S22: -0.2239 S23: 0.0079 REMARK 3 S31: 0.0060 S32: 0.4334 S33: 0.0219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8960 8.9700 85.0090 REMARK 3 T TENSOR REMARK 3 T11: -0.0696 T22: -0.0873 REMARK 3 T33: 0.0205 T12: 0.1050 REMARK 3 T13: 0.0160 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 15.9592 L22: 10.5331 REMARK 3 L33: 9.7261 L12: -7.2268 REMARK 3 L13: -8.1894 L23: 1.5917 REMARK 3 S TENSOR REMARK 3 S11: 0.3094 S12: 0.3306 S13: 0.7773 REMARK 3 S21: 0.1229 S22: 0.0073 S23: -0.0637 REMARK 3 S31: -0.4944 S32: -0.1510 S33: -0.3168 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1920 12.2870 92.1720 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: -0.0240 REMARK 3 T33: -0.0768 T12: 0.1561 REMARK 3 T13: -0.0881 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 28.9843 L22: 10.3700 REMARK 3 L33: 1.6838 L12: -0.3537 REMARK 3 L13: -6.5353 L23: 0.9440 REMARK 3 S TENSOR REMARK 3 S11: -1.0646 S12: -1.4486 S13: 1.0485 REMARK 3 S21: 1.1806 S22: 0.9305 S23: -0.3472 REMARK 3 S31: 0.0066 S32: 0.2754 S33: 0.1340 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6980 4.0680 89.1330 REMARK 3 T TENSOR REMARK 3 T11: -0.1055 T22: -0.0530 REMARK 3 T33: 0.0019 T12: 0.0328 REMARK 3 T13: -0.0248 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 9.5162 L22: 14.4367 REMARK 3 L33: 6.2640 L12: -3.6248 REMARK 3 L13: 3.0044 L23: 0.4850 REMARK 3 S TENSOR REMARK 3 S11: -0.2956 S12: -0.1370 S13: 0.3009 REMARK 3 S21: 0.2471 S22: 0.2421 S23: -0.6688 REMARK 3 S31: -0.1749 S32: 0.3220 S33: 0.0534 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9190 7.7300 76.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.0038 T22: 0.0592 REMARK 3 T33: 0.0471 T12: 0.0998 REMARK 3 T13: 0.0699 T23: 0.0739 REMARK 3 L TENSOR REMARK 3 L11: 1.5348 L22: 13.1133 REMARK 3 L33: 7.2970 L12: -0.3605 REMARK 3 L13: 1.8368 L23: -8.5818 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.3009 S13: 0.2136 REMARK 3 S21: -0.2538 S22: -0.1508 S23: -0.1296 REMARK 3 S31: -0.1307 S32: 0.6171 S33: 0.1523 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0120 -3.2040 97.3480 REMARK 3 T TENSOR REMARK 3 T11: -0.1258 T22: -0.0442 REMARK 3 T33: -0.0227 T12: 0.0519 REMARK 3 T13: -0.0237 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.1342 L22: 0.9969 REMARK 3 L33: 4.8916 L12: -0.3771 REMARK 3 L13: -1.5910 L23: 0.2720 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: 0.0345 S13: -0.1141 REMARK 3 S21: -0.0074 S22: -0.0936 S23: 0.0428 REMARK 3 S31: 0.4403 S32: -0.1945 S33: 0.1985 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 27 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7900 9.8260 63.5980 REMARK 3 T TENSOR REMARK 3 T11: -0.1269 T22: -0.0489 REMARK 3 T33: -0.0004 T12: 0.0618 REMARK 3 T13: -0.0173 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.5091 L22: 1.8847 REMARK 3 L33: 13.1034 L12: 0.7274 REMARK 3 L13: 4.8059 L23: 0.3103 REMARK 3 S TENSOR REMARK 3 S11: -0.0775 S12: 0.2258 S13: -0.1887 REMARK 3 S21: 0.0512 S22: 0.0305 S23: -0.1858 REMARK 3 S31: 0.0955 S32: 0.2324 S33: 0.0469 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6340 7.3910 65.1880 REMARK 3 T TENSOR REMARK 3 T11: -0.1348 T22: 0.2263 REMARK 3 T33: 0.0904 T12: 0.1807 REMARK 3 T13: -0.0683 T23: -0.1315 REMARK 3 L TENSOR REMARK 3 L11: 6.9674 L22: 13.2871 REMARK 3 L33: 31.8393 L12: 2.1920 REMARK 3 L13: 4.4359 L23: 16.5678 REMARK 3 S TENSOR REMARK 3 S11: 0.2770 S12: 1.3283 S13: -0.7005 REMARK 3 S21: 0.1003 S22: 0.9719 S23: -0.5714 REMARK 3 S31: 0.6591 S32: 2.2060 S33: -1.2489 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6930 18.7580 63.4480 REMARK 3 T TENSOR REMARK 3 T11: -0.0471 T22: -0.0072 REMARK 3 T33: 0.0588 T12: 0.0624 REMARK 3 T13: -0.0056 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 14.8420 L22: 10.0375 REMARK 3 L33: 13.8000 L12: -5.0404 REMARK 3 L13: -5.1394 L23: 4.3998 REMARK 3 S TENSOR REMARK 3 S11: 0.5197 S12: 0.7652 S13: -0.0067 REMARK 3 S21: -0.4367 S22: -0.0758 S23: -0.6807 REMARK 3 S31: -0.6566 S32: 0.2370 S33: -0.4440 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9260 17.9030 75.0360 REMARK 3 T TENSOR REMARK 3 T11: -0.0815 T22: -0.0713 REMARK 3 T33: 0.0140 T12: 0.0642 REMARK 3 T13: 0.0026 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 5.3052 L22: 1.6849 REMARK 3 L33: 3.1540 L12: -1.2227 REMARK 3 L13: 1.4545 L23: -1.0838 REMARK 3 S TENSOR REMARK 3 S11: -0.0771 S12: -0.0836 S13: 0.3042 REMARK 3 S21: 0.0785 S22: -0.1065 S23: -0.2301 REMARK 3 S31: -0.3132 S32: -0.0166 S33: 0.1835 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5180 12.1660 67.6200 REMARK 3 T TENSOR REMARK 3 T11: -0.1739 T22: 0.1700 REMARK 3 T33: -0.0199 T12: 0.0568 REMARK 3 T13: 0.0145 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.7104 L22: 10.2313 REMARK 3 L33: 12.4853 L12: 3.7937 REMARK 3 L13: 1.0983 L23: 7.8751 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.3092 S13: 0.0626 REMARK 3 S21: 0.2189 S22: -0.3239 S23: 0.4401 REMARK 3 S31: 0.2887 S32: -1.4716 S33: 0.2889 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7560 2.4450 48.1020 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: -0.0573 REMARK 3 T33: -0.0180 T12: -0.1059 REMARK 3 T13: -0.1005 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 8.2463 L22: 4.1457 REMARK 3 L33: 24.0870 L12: -3.5104 REMARK 3 L13: 1.8682 L23: 5.6955 REMARK 3 S TENSOR REMARK 3 S11: 0.5634 S12: -0.3288 S13: -0.6621 REMARK 3 S21: 0.0563 S22: 0.0360 S23: 0.1101 REMARK 3 S31: 2.1650 S32: -0.4632 S33: -0.5994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ELK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21233 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 40.6460 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : 0.45200 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M NA SULFATE REMARK 280 PH4.6, 30% PEG 4K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.83950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.83950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.25750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.85350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.25750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.85350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.83950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.25750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 22.85350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.83950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.25750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 22.85350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 103.83950 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 GLU A 71 REMARK 465 ILE A 112 REMARK 465 ILE A 113 REMARK 465 GLU A 114 REMARK 465 ASN A 115 REMARK 465 ARG A 116 REMARK 465 ASN A 117 REMARK 465 MSE B 1 REMARK 465 ASN B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 465 PRO B 5 REMARK 465 THR B 6 REMARK 465 ARG B 7 REMARK 465 GLN B 47 REMARK 465 ILE B 112 REMARK 465 ILE B 113 REMARK 465 GLU B 114 REMARK 465 ASN B 115 REMARK 465 ARG B 116 REMARK 465 ASN B 117 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 6 O OG1 CG2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 100 NE CZ NH1 NH2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 38 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 41 OG1 CG2 REMARK 470 GLN B 43 CG CD OE1 NE2 REMARK 470 ASP B 111 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 70 -169.44 -105.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 118 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7587 RELATED DB: TARGETDB DBREF 3ELK A 1 117 UNP Q9HL84 Q9HL84_THEAC 1 117 DBREF 3ELK B 1 117 UNP Q9HL84 Q9HL84_THEAC 1 117 SEQRES 1 A 117 MSE ASN SER ASP PRO THR ARG GLU ARG ILE LEU HIS GLY SEQRES 2 A 117 LEU ILE THR LEU TYR ILE LEU LYS GLU LEU VAL LYS ARG SEQRES 3 A 117 PRO MSE HIS GLY TYR GLU LEU GLN LYS SER MSE PHE GLU SEQRES 4 A 117 THR THR GLY GLN ALA LEU PRO GLN GLY SER ILE TYR ILE SEQRES 5 A 117 LEU LEU LYS THR MSE LYS GLU ARG GLY PHE VAL ILE SER SEQRES 6 A 117 GLU SER SER VAL ASN GLU LYS GLY GLN GLN LEU THR VAL SEQRES 7 A 117 TYR HIS ILE THR ASP ALA GLY LYS LYS PHE LEU OCS ASP SEQRES 8 A 117 HIS SER GLN ALA LEU GLN LEU ALA ARG LYS ILE ILE ASP SEQRES 9 A 117 ASP LEU LEU SER THR VAL ASP ILE ILE GLU ASN ARG ASN SEQRES 1 B 117 MSE ASN SER ASP PRO THR ARG GLU ARG ILE LEU HIS GLY SEQRES 2 B 117 LEU ILE THR LEU TYR ILE LEU LYS GLU LEU VAL LYS ARG SEQRES 3 B 117 PRO MSE HIS GLY TYR GLU LEU GLN LYS SER MSE PHE GLU SEQRES 4 B 117 THR THR GLY GLN ALA LEU PRO GLN GLY SER ILE TYR ILE SEQRES 5 B 117 LEU LEU LYS THR MSE LYS GLU ARG GLY PHE VAL ILE SER SEQRES 6 B 117 GLU SER SER VAL ASN GLU LYS GLY GLN GLN LEU THR VAL SEQRES 7 B 117 TYR HIS ILE THR ASP ALA GLY LYS LYS PHE LEU OCS ASP SEQRES 8 B 117 HIS SER GLN ALA LEU GLN LEU ALA ARG LYS ILE ILE ASP SEQRES 9 B 117 ASP LEU LEU SER THR VAL ASP ILE ILE GLU ASN ARG ASN MODRES 3ELK MSE A 28 MET SELENOMETHIONINE MODRES 3ELK MSE A 37 MET SELENOMETHIONINE MODRES 3ELK MSE A 57 MET SELENOMETHIONINE MODRES 3ELK OCS A 90 CYS CYSTEINESULFONIC ACID MODRES 3ELK MSE B 28 MET SELENOMETHIONINE MODRES 3ELK MSE B 37 MET SELENOMETHIONINE MODRES 3ELK MSE B 57 MET SELENOMETHIONINE MODRES 3ELK OCS B 90 CYS CYSTEINESULFONIC ACID HET MSE A 28 8 HET MSE A 37 8 HET MSE A 57 8 HET OCS A 90 9 HET MSE B 28 8 HET MSE B 37 8 HET MSE B 57 8 HET OCS B 90 9 HET CL A 118 1 HET CL B 118 1 HETNAM MSE SELENOMETHIONINE HETNAM OCS CYSTEINESULFONIC ACID HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *129(H2 O) HELIX 1 1 GLU A 8 ARG A 26 1 19 HELIX 2 2 GLY A 30 GLY A 42 1 13 HELIX 3 3 GLY A 48 ARG A 60 1 13 HELIX 4 4 THR A 82 HIS A 92 1 11 HELIX 5 5 ALA A 95 SER A 108 1 14 HELIX 6 6 GLU B 8 ARG B 26 1 19 HELIX 7 7 HIS B 29 GLY B 42 1 14 HELIX 8 8 GLY B 48 ARG B 60 1 13 HELIX 9 9 THR B 82 HIS B 92 1 11 HELIX 10 10 HIS B 92 VAL B 110 1 19 SHEET 1 A 3 MSE A 28 HIS A 29 0 SHEET 2 A 3 GLN A 75 ILE A 81 -1 O TYR A 79 N MSE A 28 SHEET 3 A 3 VAL A 63 VAL A 69 -1 N SER A 68 O LEU A 76 SHEET 1 B 2 VAL B 63 VAL B 69 0 SHEET 2 B 2 GLN B 75 ILE B 81 -1 O LEU B 76 N SER B 68 LINK C PRO A 27 N MSE A 28 1555 1555 1.32 LINK C MSE A 28 N HIS A 29 1555 1555 1.32 LINK C SER A 36 N MSE A 37 1555 1555 1.30 LINK C MSE A 37 N PHE A 38 1555 1555 1.30 LINK C THR A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N LYS A 58 1555 1555 1.33 LINK C LEU A 89 N OCS A 90 1555 1555 1.30 LINK C OCS A 90 N ASP A 91 1555 1555 1.31 LINK C PRO B 27 N MSE B 28 1555 1555 1.30 LINK C MSE B 28 N HIS B 29 1555 1555 1.31 LINK C SER B 36 N MSE B 37 1555 1555 1.31 LINK C MSE B 37 N PHE B 38 1555 1555 1.32 LINK C THR B 56 N MSE B 57 1555 1555 1.29 LINK C MSE B 57 N LYS B 58 1555 1555 1.31 LINK C LEU B 89 N OCS B 90 1555 1555 1.30 LINK C OCS B 90 N ASP B 91 1555 1555 1.30 SITE 1 AC1 2 THR A 82 ASP A 83 SITE 1 AC2 5 ASN A 70 TYR B 31 TYR B 51 HOH B 125 SITE 2 AC2 5 HOH B 156 CRYST1 42.515 45.707 207.679 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004820 0.00000