data_3EM2 # _entry.id 3EM2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EM2 pdb_00003em2 10.2210/pdb3em2/pdb NDB DD0095 ? ? RCSB RCSB049492 ? ? WWPDB D_1000049492 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1L1H 'Same quadruplex structure bound with a different ligand BSU-6039' unspecified PDB 1JPQ 'Same quadruplex structure in its native form (ligand-free)' unspecified PDB 1JRN 'Same quadruplex structure in its native form (ligand-free)' unspecified PDB 3CE5 'A bimolecular parallel-stranded human telomeric quadruplex in complex with a 3,6,9-trisubstituted acridine molecule BRACO19' unspecified PDB 3EQW ;A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in small unit cell ; unspecified PDB 3ERU 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6045' unspecified PDB 3ES0 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6048' unspecified PDB 3ET8 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6054' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EM2 _pdbx_database_status.recvd_initial_deposition_date 2008-09-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Campbell, N.H.' 1 'Parkinson, G.' 2 'Neidle, S.' 3 # _citation.id primary _citation.title 'Selectivity in Ligand Recognition of G-Quadruplex Loops.' _citation.journal_abbrev Biochemistry _citation.journal_volume 48 _citation.page_first 1675 _citation.page_last 1680 _citation.year 2009 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19173611 _citation.pdbx_database_id_DOI 10.1021/bi802233v # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Campbell, N.H.' 1 ? primary 'Patel, M.' 2 ? primary 'Tofa, A.B.' 3 ? primary 'Ghosh, R.' 4 ? primary 'Parkinson, G.N.' 5 ? primary 'Neidle, S.' 6 ? # _cell.entry_id 3EM2 _cell.length_a 55.231 _cell.length_b 42.709 _cell.length_c 26.844 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EM2 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3'" 3805.460 2 ? ? ? 'Bimolecular anti-parallel-stranded DNA quadruplex' 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 non-polymer syn '3,6-Bis[(3-morpholinopropionamido)] acridine' 491.582 1 ? ? ? ? 4 water nat water 18.015 64 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DT)(DG)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGGGTTTTGGGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The sequence occurs naturally in Oxytricha nova' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3EM2 _struct_ref.pdbx_db_accession 3EM2 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GGGGTTTTGGGG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EM2 A 1 ? 12 ? 3EM2 1 ? 12 ? 1 12 2 1 3EM2 B 1 ? 12 ? 3EM2 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NCE non-polymer . '3,6-Bis[(3-morpholinopropionamido)] acridine' "N,N'-acridine-3,6-diylbis(3-morpholin-4-ylpropanamide)" 'C27 H33 N5 O4' 491.582 # _exptl.entry_id 3EM2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 285.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;2 microliter drops containing 5% v/v MPD, 0.50 mM DNA, 0.25 mM Ligand, 40 mM Potassium chloride, 5 mM Magnesium chloride, 4.1 mM Spermine equilibrated against 35% v/v MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 285.15K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'Potassium chloride' ? ? ? 1 3 1 'Magnesium chloride' ? ? ? 1 4 1 Spermine ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 105 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-05-31 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Osmic mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3EM2 _reflns.observed_criterion_sigma_I 3.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.79 _reflns.d_resolution_high 2.30 _reflns.number_obs 3000 _reflns.number_all 3093 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.9 _reflns.B_iso_Wilson_estimate 33.502 _reflns.pdbx_redundancy 3.71 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.173 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.1 _reflns_shell.pdbx_redundancy 3.59 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 303 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3EM2 _refine.ls_number_reflns_obs 3000 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.62 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 96.96 _refine.ls_R_factor_obs 0.20706 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20255 _refine.ls_R_factor_R_free 0.29342 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 144 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.907 _refine.B_iso_mean 16.976 _refine.aniso_B[1][1] -1.05 _refine.aniso_B[2][2] -1.04 _refine.aniso_B[3][3] 2.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1L1H' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model overall _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.369 _refine.pdbx_overall_ESU_R_Free 0.320 _refine.overall_SU_ML 0.176 _refine.overall_SU_B 7.267 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 506 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 610 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 27.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.021 ? 608 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.152 3.173 ? 934 'X-RAY DIFFRACTION' ? r_chiral_restr 0.057 0.200 ? 94 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 298 'X-RAY DIFFRACTION' ? r_nbd_refined 0.326 0.200 ? 207 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.291 0.200 ? 337 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.166 0.200 ? 45 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.091 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.162 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.211 0.200 ? 10 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.359 _refine_ls_shell.number_reflns_R_work 205 _refine_ls_shell.R_factor_R_work 0.254 _refine_ls_shell.percent_reflns_obs 99.54 _refine_ls_shell.R_factor_R_free 0.378 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 12 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EM2 _struct.title 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6038' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EM2 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'quadruplex, Oxytricha nova, BSU-6038, BSU6038, anti-parallel, bimolecular, macromolecule, G-quadruplex, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 C K . K ? ? A DG 1 A K 26 1_555 ? ? ? ? ? ? ? 2.765 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 26 1_555 ? ? ? ? ? ? ? 2.842 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? A DG 2 A K 27 1_555 ? ? ? ? ? ? ? 2.772 ? ? metalc4 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 4 A K 28 1_555 ? ? ? ? ? ? ? 2.722 ? ? metalc5 metalc ? ? A DG 9 O6 ? ? ? 1_555 E K . K ? ? A DG 9 A K 28 1_555 ? ? ? ? ? ? ? 2.750 ? ? metalc6 metalc ? ? A DG 10 O6 ? ? ? 1_555 D K . K ? ? A DG 10 A K 27 1_555 ? ? ? ? ? ? ? 2.814 ? ? metalc7 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 26 1_555 ? ? ? ? ? ? ? 2.959 ? ? metalc8 metalc ? ? A DG 11 O6 ? ? ? 1_555 D K . K ? ? A DG 11 A K 27 1_555 ? ? ? ? ? ? ? 2.977 ? ? metalc9 metalc ? ? A DG 12 O6 ? ? ? 1_555 C K . K ? ? A DG 12 A K 26 1_555 ? ? ? ? ? ? ? 2.889 ? ? metalc10 metalc ? ? A DG 12 O6 ? ? ? 1_555 G K . K ? ? A DG 12 B K 25 1_555 ? ? ? ? ? ? ? 2.897 ? ? metalc11 metalc ? ? C K . K ? ? ? 1_555 B DG 4 O6 ? ? A K 26 B DG 16 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc12 metalc ? ? C K . K ? ? ? 1_555 B DG 9 O6 ? ? A K 26 B DG 21 1_555 ? ? ? ? ? ? ? 2.848 ? ? metalc13 metalc ? ? C K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 26 B DG 22 1_555 ? ? ? ? ? ? ? 2.933 ? ? metalc14 metalc ? ? D K . K ? ? ? 1_555 B DG 2 O6 ? ? A K 27 B DG 14 1_555 ? ? ? ? ? ? ? 2.884 ? ? metalc15 metalc ? ? D K . K ? ? ? 1_555 B DG 3 O6 ? ? A K 27 B DG 15 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc16 metalc ? ? D K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 27 B DG 22 1_555 ? ? ? ? ? ? ? 2.943 ? ? metalc17 metalc ? ? D K . K ? ? ? 1_555 B DG 11 O6 ? ? A K 27 B DG 23 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc18 metalc ? ? E K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 28 B DG 13 1_555 ? ? ? ? ? ? ? 2.813 ? ? metalc19 metalc ? ? E K . K ? ? ? 1_555 B DG 12 O6 ? ? A K 28 B DG 24 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc20 metalc ? ? B DG 4 O6 ? ? ? 1_555 G K . K ? ? B DG 16 B K 25 1_555 ? ? ? ? ? ? ? 2.941 ? ? metalc21 metalc ? ? B DT 5 O2 ? ? ? 1_555 G K . K ? ? B DT 17 B K 25 1_555 ? ? ? ? ? ? ? 2.887 ? ? metalc22 metalc ? ? B DT 7 O2 ? ? ? 1_555 G K . K ? ? B DT 19 B K 25 1_555 ? ? ? ? ? ? ? 2.577 ? ? metalc23 metalc ? ? G K . K ? ? ? 1_555 I HOH . O ? ? B K 25 B HOH 41 1_555 ? ? ? ? ? ? ? 2.744 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 1 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 1 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DG 9 O6 ? ? A DG 1 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DG 9 N7 ? ? A DG 1 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 2 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 2 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 10 N2 ? ? A DG 2 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 10 N1 ? ? A DG 2 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 2 N2 ? ? A DG 3 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 2 N1 ? ? A DG 3 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DG 11 O6 ? ? A DG 3 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DG 11 N7 ? ? A DG 3 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DG 1 O6 ? ? A DG 4 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DG 1 N7 ? ? A DG 4 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 12 N2 ? ? A DG 4 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 12 N1 ? ? A DG 4 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N7 ? ? ? 1_555 B DG 1 N2 ? ? A DG 9 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DG 1 N1 ? ? A DG 9 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 12 O6 ? ? A DG 9 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 12 N7 ? ? A DG 9 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DG 2 O6 ? ? A DG 10 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DG 2 N7 ? ? A DG 10 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 10 N7 ? ? ? 1_555 B DG 11 N2 ? ? A DG 10 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DG 11 N1 ? ? A DG 10 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 11 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 11 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 11 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DG 10 O6 ? ? A DG 11 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DG 10 N7 ? ? A DG 11 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 12 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 12 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 12 N7 ? ? ? 1_555 B DG 9 N2 ? ? A DG 12 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DG 9 N1 ? ? A DG 12 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DT 5 O2 ? ? ? 1_555 B DT 7 N3 ? ? B DT 17 B DT 19 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 26 ? 10 'BINDING SITE FOR RESIDUE K A 26' AC2 Software A K 27 ? 10 'BINDING SITE FOR RESIDUE K A 27' AC3 Software A K 28 ? 9 'BINDING SITE FOR RESIDUE K A 28' AC4 Software A NCE 29 ? 9 'BINDING SITE FOR RESIDUE NCE A 29' AC5 Software B K 25 ? 9 'BINDING SITE FOR RESIDUE K B 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 10 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 10 DG A 11 ? DG A 11 . ? 1_555 ? 4 AC1 10 DG A 12 ? DG A 12 . ? 1_555 ? 5 AC1 10 K D . ? K A 27 . ? 1_555 ? 6 AC1 10 DG B 3 ? DG B 15 . ? 1_555 ? 7 AC1 10 DG B 4 ? DG B 16 . ? 1_555 ? 8 AC1 10 DG B 9 ? DG B 21 . ? 1_555 ? 9 AC1 10 DG B 10 ? DG B 22 . ? 1_555 ? 10 AC1 10 K G . ? K B 25 . ? 1_555 ? 11 AC2 10 DG A 2 ? DG A 2 . ? 1_555 ? 12 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 13 AC2 10 DG A 10 ? DG A 10 . ? 1_555 ? 14 AC2 10 DG A 11 ? DG A 11 . ? 1_555 ? 15 AC2 10 K C . ? K A 26 . ? 1_555 ? 16 AC2 10 K E . ? K A 28 . ? 1_555 ? 17 AC2 10 DG B 2 ? DG B 14 . ? 1_555 ? 18 AC2 10 DG B 3 ? DG B 15 . ? 1_555 ? 19 AC2 10 DG B 10 ? DG B 22 . ? 1_555 ? 20 AC2 10 DG B 11 ? DG B 23 . ? 1_555 ? 21 AC3 9 DG A 3 ? DG A 3 . ? 1_555 ? 22 AC3 9 DG A 4 ? DG A 4 . ? 1_555 ? 23 AC3 9 DG A 9 ? DG A 9 . ? 1_555 ? 24 AC3 9 DG A 10 ? DG A 10 . ? 1_555 ? 25 AC3 9 K D . ? K A 27 . ? 1_555 ? 26 AC3 9 DG B 1 ? DG B 13 . ? 1_555 ? 27 AC3 9 DG B 2 ? DG B 14 . ? 1_555 ? 28 AC3 9 DG B 11 ? DG B 23 . ? 1_555 ? 29 AC3 9 DG B 12 ? DG B 24 . ? 1_555 ? 30 AC4 9 DT A 6 ? DT A 6 . ? 1_555 ? 31 AC4 9 DT A 7 ? DT A 7 . ? 1_555 ? 32 AC4 9 DT A 8 ? DT A 8 . ? 1_555 ? 33 AC4 9 DG A 9 ? DG A 9 . ? 1_555 ? 34 AC4 9 DG B 1 ? DG B 13 . ? 1_555 ? 35 AC4 9 DT B 8 ? DT B 20 . ? 3_556 ? 36 AC4 9 DG B 9 ? DG B 21 . ? 3_556 ? 37 AC4 9 DG B 12 ? DG B 24 . ? 1_555 ? 38 AC4 9 HOH I . ? HOH B 30 . ? 1_555 ? 39 AC5 9 DG A 1 ? DG A 1 . ? 1_555 ? 40 AC5 9 DG A 12 ? DG A 12 . ? 1_555 ? 41 AC5 9 K C . ? K A 26 . ? 1_555 ? 42 AC5 9 DG B 4 ? DG B 16 . ? 1_555 ? 43 AC5 9 DT B 5 ? DT B 17 . ? 1_555 ? 44 AC5 9 DT B 7 ? DT B 19 . ? 1_555 ? 45 AC5 9 DG B 9 ? DG B 21 . ? 1_555 ? 46 AC5 9 HOH I . ? HOH B 40 . ? 1_555 ? 47 AC5 9 HOH I . ? HOH B 41 . ? 1_555 ? # _database_PDB_matrix.entry_id 3EM2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3EM2 _atom_sites.fract_transf_matrix[1][1] 0.018106 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023414 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037252 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DG 1 13 13 DG G B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DG 3 15 15 DG G B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DT 5 17 17 DT T B . n B 1 6 DT 6 18 18 DT T B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DG 9 21 21 DG G B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DG 11 23 23 DG G B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 26 26 K K A . D 2 K 1 27 27 K K A . E 2 K 1 28 28 K K A . F 3 NCE 1 29 29 NCE NCE A . G 2 K 1 25 25 K K B . H 4 HOH 1 31 3 HOH HOH A . H 4 HOH 2 32 4 HOH HOH A . H 4 HOH 3 33 5 HOH HOH A . H 4 HOH 4 35 8 HOH HOH A . H 4 HOH 5 36 9 HOH HOH A . H 4 HOH 6 37 14 HOH HOH A . H 4 HOH 7 38 15 HOH HOH A . H 4 HOH 8 39 18 HOH HOH A . H 4 HOH 9 40 21 HOH HOH A . H 4 HOH 10 41 24 HOH HOH A . H 4 HOH 11 42 26 HOH HOH A . H 4 HOH 12 43 29 HOH HOH A . H 4 HOH 13 44 30 HOH HOH A . H 4 HOH 14 45 31 HOH HOH A . H 4 HOH 15 46 33 HOH HOH A . H 4 HOH 16 47 37 HOH HOH A . H 4 HOH 17 48 41 HOH HOH A . H 4 HOH 18 49 42 HOH HOH A . H 4 HOH 19 50 44 HOH HOH A . H 4 HOH 20 51 47 HOH HOH A . H 4 HOH 21 52 49 HOH HOH A . H 4 HOH 22 53 51 HOH HOH A . H 4 HOH 23 55 55 HOH HOH A . H 4 HOH 24 56 58 HOH HOH A . H 4 HOH 25 57 59 HOH HOH A . H 4 HOH 26 58 60 HOH HOH A . H 4 HOH 27 59 64 HOH HOH A . I 4 HOH 1 30 2 HOH HOH B . I 4 HOH 2 31 7 HOH HOH B . I 4 HOH 3 32 53 HOH HOH B . I 4 HOH 4 33 1 HOH HOH B . I 4 HOH 5 34 6 HOH HOH B . I 4 HOH 6 35 10 HOH HOH B . I 4 HOH 7 36 11 HOH HOH B . I 4 HOH 8 37 12 HOH HOH B . I 4 HOH 9 38 13 HOH HOH B . I 4 HOH 10 39 16 HOH HOH B . I 4 HOH 11 40 17 HOH HOH B . I 4 HOH 12 41 19 HOH HOH B . I 4 HOH 13 42 20 HOH HOH B . I 4 HOH 14 43 22 HOH HOH B . I 4 HOH 15 44 23 HOH HOH B . I 4 HOH 16 45 25 HOH HOH B . I 4 HOH 17 46 27 HOH HOH B . I 4 HOH 18 47 28 HOH HOH B . I 4 HOH 19 48 32 HOH HOH B . I 4 HOH 20 49 34 HOH HOH B . I 4 HOH 21 50 35 HOH HOH B . I 4 HOH 22 51 36 HOH HOH B . I 4 HOH 23 52 38 HOH HOH B . I 4 HOH 24 53 39 HOH HOH B . I 4 HOH 25 54 40 HOH HOH B . I 4 HOH 26 55 43 HOH HOH B . I 4 HOH 27 56 45 HOH HOH B . I 4 HOH 28 57 46 HOH HOH B . I 4 HOH 29 58 48 HOH HOH B . I 4 HOH 30 59 50 HOH HOH B . I 4 HOH 31 60 52 HOH HOH B . I 4 HOH 32 61 54 HOH HOH B . I 4 HOH 33 62 56 HOH HOH B . I 4 HOH 34 63 57 HOH HOH B . I 4 HOH 35 64 61 HOH HOH B . I 4 HOH 36 65 62 HOH HOH B . I 4 HOH 37 66 63 HOH HOH B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1780 ? 1 MORE 5.5 ? 1 'SSA (A^2)' 4150 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 67.3 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 164.9 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 107.0 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 114.5 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 174.2 ? 6 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 72.7 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 71.6 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 114.1 ? 9 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 99.8 ? 10 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 71.5 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 77.6 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 106.7 ? 13 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 117.4 ? 14 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 69.0 ? 15 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 112.0 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 117.3 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 72.1 ? 18 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 71.8 ? 19 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 102.6 ? 20 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 171.1 ? 21 O6 ? B DG 9 ? B DG 21 ? 1_555 K ? C K . ? A K 26 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 70.8 ? 22 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 133.9 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 108.3 ? 24 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 90.6 ? 25 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 2 ? B DG 14 ? 1_555 155.1 ? 26 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 2 ? B DG 14 ? 1_555 70.5 ? 27 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 2 ? B DG 14 ? 1_555 71.4 ? 28 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 69.9 ? 29 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 154.1 ? 30 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 68.8 ? 31 O6 ? B DG 2 ? B DG 14 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 87.6 ? 32 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 72.9 ? 33 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 74.3 ? 34 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 71.4 ? 35 O6 ? B DG 2 ? B DG 14 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 127.5 ? 36 O6 ? B DG 3 ? B DG 15 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 111.4 ? 37 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 77.6 ? 38 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 74.8 ? 39 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 163.3 ? 40 O6 ? B DG 2 ? B DG 14 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 110.0 ? 41 O6 ? B DG 3 ? B DG 15 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 127.5 ? 42 O6 ? B DG 10 ? B DG 22 ? 1_555 K ? D K . ? A K 27 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 96.4 ? 43 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 28 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 124.8 ? 44 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 28 ? 1_555 O6 ? B DG 1 ? B DG 13 ? 1_555 75.7 ? 45 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 28 ? 1_555 O6 ? B DG 1 ? B DG 13 ? 1_555 77.2 ? 46 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 28 ? 1_555 O6 ? B DG 12 ? B DG 24 ? 1_555 77.8 ? 47 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 28 ? 1_555 O6 ? B DG 12 ? B DG 24 ? 1_555 76.9 ? 48 O6 ? B DG 1 ? B DG 13 ? 1_555 K ? E K . ? A K 28 ? 1_555 O6 ? B DG 12 ? B DG 24 ? 1_555 121.4 ? 49 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 25 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 69.0 ? 50 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 25 ? 1_555 O2 ? B DT 5 ? B DT 17 ? 1_555 129.5 ? 51 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? G K . ? B K 25 ? 1_555 O2 ? B DT 5 ? B DT 17 ? 1_555 74.0 ? 52 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 25 ? 1_555 O2 ? B DT 7 ? B DT 19 ? 1_555 154.9 ? 53 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? G K . ? B K 25 ? 1_555 O2 ? B DT 7 ? B DT 19 ? 1_555 128.2 ? 54 O2 ? B DT 5 ? B DT 17 ? 1_555 K ? G K . ? B K 25 ? 1_555 O2 ? B DT 7 ? B DT 19 ? 1_555 75.5 ? 55 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 25 ? 1_555 O ? I HOH . ? B HOH 41 ? 1_555 90.3 ? 56 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? G K . ? B K 25 ? 1_555 O ? I HOH . ? B HOH 41 ? 1_555 150.6 ? 57 O2 ? B DT 5 ? B DT 17 ? 1_555 K ? G K . ? B K 25 ? 1_555 O ? I HOH . ? B HOH 41 ? 1_555 107.3 ? 58 O2 ? B DT 7 ? B DT 19 ? 1_555 K ? G K . ? B K 25 ? 1_555 O ? I HOH . ? B HOH 41 ? 1_555 78.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.52 102.40 -4.88 0.80 N 2 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.55 108.30 2.25 0.30 N 3 1 C4 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 122.92 119.00 3.92 0.60 N 4 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 114.40 108.30 6.10 0.30 N 5 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.12 108.30 1.82 0.30 N 6 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 113.90 108.30 5.60 0.30 N 7 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 112.50 108.30 4.20 0.30 N 8 1 "O4'" B DT 17 ? ? "C4'" B DT 17 ? ? "C3'" B DT 17 ? ? 101.19 104.50 -3.31 0.40 N 9 1 "C1'" B DT 17 ? ? "O4'" B DT 17 ? ? "C4'" B DT 17 ? ? 103.86 110.10 -6.24 1.00 N 10 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 112.32 108.30 4.02 0.30 N 11 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 110.64 108.30 2.34 0.30 N 12 1 C5 B DG 21 ? ? C6 B DG 21 ? ? N1 B DG 21 ? ? 114.98 111.50 3.48 0.50 N 13 1 "O4'" B DG 23 ? ? "C1'" B DG 23 ? ? N9 B DG 23 ? ? 110.18 108.30 1.88 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 NCE C75 C N N 78 NCE C72 C N N 79 NCE O32 O N N 80 NCE C66 C N N 81 NCE C63 C N N 82 NCE N61 N N N 83 NCE C58 C N N 84 NCE C55 C N N 85 NCE C54 C N N 86 NCE O84 O N N 87 NCE N52 N N N 88 NCE C51 C Y N 89 NCE C85 C Y N 90 NCE C49 C Y N 91 NCE C47 C Y N 92 NCE C2 C Y N 93 NCE C45 C Y N 94 NCE C87 C Y N 95 NCE N1 N Y N 96 NCE C3 C Y N 97 NCE C4 C Y N 98 NCE C44 C Y N 99 NCE C42 C Y N 100 NCE C40 C Y N 101 NCE C6 C Y N 102 NCE N7 N N N 103 NCE C9 C N N 104 NCE O39 O N N 105 NCE C10 C N N 106 NCE C13 C N N 107 NCE N16 N N N 108 NCE C36 C N N 109 NCE C33 C N N 110 NCE O12 O N N 111 NCE C27 C N N 112 NCE C18 C N N 113 NCE H75 H N N 114 NCE H75A H N N 115 NCE H72 H N N 116 NCE H72A H N N 117 NCE H66 H N N 118 NCE H66A H N N 119 NCE H63 H N N 120 NCE H63A H N N 121 NCE H58 H N N 122 NCE H58A H N N 123 NCE H55 H N N 124 NCE H55A H N N 125 NCE HN52 H N N 126 NCE H85 H N N 127 NCE H49 H N N 128 NCE H47 H N N 129 NCE H45 H N N 130 NCE H4 H N N 131 NCE H42 H N N 132 NCE H40 H N N 133 NCE HN7 H N N 134 NCE H10 H N N 135 NCE H10A H N N 136 NCE H13 H N N 137 NCE H13A H N N 138 NCE H36 H N N 139 NCE H36A H N N 140 NCE H33 H N N 141 NCE H33A H N N 142 NCE H27 H N N 143 NCE H27A H N N 144 NCE H18 H N N 145 NCE H18A H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 NCE C75 C72 sing N N 79 NCE C75 N61 sing N N 80 NCE C72 O32 sing N N 81 NCE O32 C66 sing N N 82 NCE C66 C63 sing N N 83 NCE C63 N61 sing N N 84 NCE N61 C58 sing N N 85 NCE C58 C55 sing N N 86 NCE C55 C54 sing N N 87 NCE C54 O84 doub N N 88 NCE C54 N52 sing N N 89 NCE N52 C51 sing N N 90 NCE C51 C85 doub Y N 91 NCE C51 C49 sing Y N 92 NCE C85 C87 sing Y N 93 NCE C49 C47 doub Y N 94 NCE C47 C2 sing Y N 95 NCE C2 C45 doub Y N 96 NCE C2 C87 sing Y N 97 NCE C45 C44 sing Y N 98 NCE C87 N1 doub Y N 99 NCE N1 C3 sing Y N 100 NCE C3 C4 doub Y N 101 NCE C3 C44 sing Y N 102 NCE C4 C6 sing Y N 103 NCE C44 C42 doub Y N 104 NCE C42 C40 sing Y N 105 NCE C40 C6 doub Y N 106 NCE C6 N7 sing N N 107 NCE N7 C9 sing N N 108 NCE C9 O39 doub N N 109 NCE C9 C10 sing N N 110 NCE C10 C13 sing N N 111 NCE C13 N16 sing N N 112 NCE N16 C36 sing N N 113 NCE N16 C18 sing N N 114 NCE C36 C33 sing N N 115 NCE C33 O12 sing N N 116 NCE O12 C27 sing N N 117 NCE C27 C18 sing N N 118 NCE C75 H75 sing N N 119 NCE C75 H75A sing N N 120 NCE C72 H72 sing N N 121 NCE C72 H72A sing N N 122 NCE C66 H66 sing N N 123 NCE C66 H66A sing N N 124 NCE C63 H63 sing N N 125 NCE C63 H63A sing N N 126 NCE C58 H58 sing N N 127 NCE C58 H58A sing N N 128 NCE C55 H55 sing N N 129 NCE C55 H55A sing N N 130 NCE N52 HN52 sing N N 131 NCE C85 H85 sing N N 132 NCE C49 H49 sing N N 133 NCE C47 H47 sing N N 134 NCE C45 H45 sing N N 135 NCE C4 H4 sing N N 136 NCE C42 H42 sing N N 137 NCE C40 H40 sing N N 138 NCE N7 HN7 sing N N 139 NCE C10 H10 sing N N 140 NCE C10 H10A sing N N 141 NCE C13 H13 sing N N 142 NCE C13 H13A sing N N 143 NCE C36 H36 sing N N 144 NCE C36 H36A sing N N 145 NCE C33 H33 sing N N 146 NCE C33 H33A sing N N 147 NCE C27 H27 sing N N 148 NCE C27 H27A sing N N 149 NCE C18 H18 sing N N 150 NCE C18 H18A sing N N 151 # _ndb_struct_conf_na.entry_id 3EM2 _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 '3,6-Bis[(3-morpholinopropionamido)] acridine' NCE 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1L1H _pdbx_initial_refinement_model.details 'PDB entry 1L1H' #