HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-SEP-08 3EMM TITLE X-RAY STRUCTURE OF PROTEIN FROM ARABIDOPSIS THALIANA AT1G79260 WITH TITLE 2 BOUND HEME COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN AT1G79260; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G79260, YUP8H12R.14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVP 16 KEYWDS HEME, UNKNOWN FUNCTION, STRUCTURAL GENOMICS FUNCTIONAL FOLLOW-UP KEYWDS 2 STUDY, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG EXPDTA X-RAY DIFFRACTION AUTHOR C.M.BIANCHETTI,C.A.BINGMAN,G.E.WESENBERG,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 06-SEP-23 3EMM 1 REMARK REVDAT 4 25-OCT-17 3EMM 1 REMARK REVDAT 3 02-FEB-10 3EMM 1 JRNL REVDAT 2 24-FEB-09 3EMM 1 VERSN REVDAT 1 14-OCT-08 3EMM 0 JRNL AUTH C.M.BIANCHETTI,G.C.BLOUIN,E.BITTO,J.S.OLSON,G.N.PHILLIPS JRNL TITL THE STRUCTURE AND NO BINDING PROPERTIES OF THE JRNL TITL 2 NITROPHORIN-LIKE HEME-BINDING PROTEIN FROM ARABIDOPSIS JRNL TITL 3 THALIANA GENE LOCUS AT1G79260.1. JRNL REF PROTEINS V. 78 917 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 19938152 JRNL DOI 10.1002/PROT.22617 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 37799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.931 REMARK 3 FREE R VALUE TEST SET COUNT : 1864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65700 REMARK 3 B22 (A**2) : -0.69400 REMARK 3 B33 (A**2) : 0.03700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1329 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1826 ; 1.354 ; 2.081 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 168 ; 6.236 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;36.402 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 226 ;11.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.207 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1010 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 555 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 911 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 813 ; 0.769 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1288 ; 1.246 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 597 ; 1.759 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 528 ; 2.512 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9703 9.4478 -1.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.0489 T22: 0.0407 REMARK 3 T33: 0.0568 T12: 0.0023 REMARK 3 T13: -0.0075 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.7667 L22: 1.2084 REMARK 3 L33: 1.1580 L12: -0.0689 REMARK 3 L13: -0.8844 L23: 0.2915 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.0252 S13: -0.0399 REMARK 3 S21: 0.0122 S22: 0.0150 S23: -0.0927 REMARK 3 S31: -0.0782 S32: 0.1180 S33: 0.0527 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9212 -1.3172 -4.9326 REMARK 3 T TENSOR REMARK 3 T11: -0.0026 T22: 0.1126 REMARK 3 T33: 0.4090 T12: 0.0295 REMARK 3 T13: 0.1269 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 4.6108 L22: 7.9010 REMARK 3 L33: 21.4252 L12: 4.5944 REMARK 3 L13: -5.1470 L23: 0.0987 REMARK 3 S TENSOR REMARK 3 S11: -0.2912 S12: 0.1904 S13: -1.0416 REMARK 3 S21: -0.4869 S22: 0.2302 S23: -1.4384 REMARK 3 S31: 0.2930 S32: 0.9762 S33: 0.0609 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1330 9.4305 7.4538 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.0205 REMARK 3 T33: 0.0491 T12: 0.0126 REMARK 3 T13: -0.0130 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.4861 L22: 2.2349 REMARK 3 L33: 0.8505 L12: 0.0401 REMARK 3 L13: -0.2805 L23: 0.2943 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.0110 S13: 0.0436 REMARK 3 S21: 0.2465 S22: -0.0252 S23: -0.0057 REMARK 3 S31: -0.0431 S32: 0.0165 S33: 0.0328 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5230 11.8427 7.5988 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0419 REMARK 3 T33: 0.0645 T12: -0.0113 REMARK 3 T13: -0.0447 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.8768 L22: 1.5109 REMARK 3 L33: 2.0632 L12: 0.3773 REMARK 3 L13: -0.4869 L23: -0.5796 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0706 S13: 0.0476 REMARK 3 S21: 0.1765 S22: -0.0213 S23: -0.1825 REMARK 3 S31: -0.1047 S32: 0.1863 S33: 0.0121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.358 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9690 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.23600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.074 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2A13 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (16.5 MG/ML NATIVE REMARK 280 PROTEIN [HEME WAS ADDED IN PURIFICATION STEP], 0.050 M SODIUM REMARK 280 CHLORIDE, 0.0003 M TCEP, 0.005 M MES PH 6.0) MIXED IN A 1:1 REMARK 280 RATIO WITH THE WELL SOLUTION (24% PEG 4K, 0.05 M BTP PH 7.0 ) REMARK 280 CRYOPROTECTED WITH 30% PEG 4K, 0.05 M BTP PH 7.0 AND 15% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.87450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.86600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.87450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.86600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 ASN A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3346 O HOH A 3435 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 38 149.37 -179.46 REMARK 500 MET A 75 -135.92 -117.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 158 NE2 REMARK 620 2 HEM A 200 NA 92.5 REMARK 620 3 HEM A 200 NB 92.1 91.1 REMARK 620 4 HEM A 200 NC 97.6 169.8 87.5 REMARK 620 5 HEM A 200 ND 99.0 89.8 168.9 89.6 REMARK 620 6 HOH A3432 O 167.6 89.0 75.5 80.9 93.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A3318 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A13 RELATED DB: PDB REMARK 900 SELENOMETHIONINE SUBSTITUTED AT1G79260 WITHOUT HEME REMARK 900 RELATED ID: GO.6462 RELATED DB: TARGETDB DBREF 3EMM A 1 166 UNP O64527 Y1926_ARATH 1 166 SEQRES 1 A 166 MET ASN GLN LEU GLN GLN LEU GLN ASN PRO GLY GLU SER SEQRES 2 A 166 PRO PRO VAL HIS PRO PHE VAL ALA PRO LEU SER TYR LEU SEQRES 3 A 166 LEU GLY THR TRP ARG GLY GLN GLY GLU GLY GLU TYR PRO SEQRES 4 A 166 THR ILE PRO SER PHE ARG TYR GLY GLU GLU ILE ARG PHE SEQRES 5 A 166 SER HIS SER GLY LYS PRO VAL ILE ALA TYR THR GLN LYS SEQRES 6 A 166 THR TRP LYS LEU GLU SER GLY ALA PRO MET HIS ALA GLU SEQRES 7 A 166 SER GLY TYR PHE ARG PRO ARG PRO ASP GLY SER ILE GLU SEQRES 8 A 166 VAL VAL ILE ALA GLN SER THR GLY LEU VAL GLU VAL GLN SEQRES 9 A 166 LYS GLY THR TYR ASN VAL ASP GLU GLN SER ILE LYS LEU SEQRES 10 A 166 LYS SER ASP LEU VAL GLY ASN ALA SER LYS VAL LYS GLU SEQRES 11 A 166 ILE SER ARG GLU PHE GLU LEU VAL ASP GLY LYS LEU SER SEQRES 12 A 166 TYR VAL VAL ARG MET SER THR THR THR ASN PRO LEU GLN SEQRES 13 A 166 PRO HIS LEU LYS ALA ILE LEU ASP LYS LEU HET HEM A 200 43 HET EDO A3318 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EDO 1,2-ETHANEDIOL HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *253(H2 O) HELIX 1 1 VAL A 20 LEU A 27 5 8 SHEET 1 A11 GLY A 28 TYR A 38 0 SHEET 2 A11 ILE A 41 SER A 53 -1 O PHE A 44 N GLY A 36 SHEET 3 A11 ILE A 60 TRP A 67 -1 O TRP A 67 N GLY A 47 SHEET 4 A11 PRO A 74 PRO A 84 -1 O PHE A 82 N ILE A 60 SHEET 5 A11 SER A 89 GLN A 96 -1 O GLU A 91 N ARG A 83 SHEET 6 A11 VAL A 101 ASN A 109 -1 O GLN A 104 N VAL A 92 SHEET 7 A11 SER A 114 GLY A 123 -1 O LYS A 116 N THR A 107 SHEET 8 A11 VAL A 128 VAL A 138 -1 O PHE A 135 N ILE A 115 SHEET 9 A11 LYS A 141 THR A 150 -1 O LYS A 141 N VAL A 138 SHEET 10 A11 GLN A 156 LYS A 165 -1 O HIS A 158 N VAL A 146 SHEET 11 A11 GLY A 28 TYR A 38 -1 N GLU A 35 O LYS A 160 LINK NE2 HIS A 158 FE HEM A 200 1555 1555 2.22 LINK FE HEM A 200 O HOH A3432 1555 1555 2.51 SITE 1 AC1 16 THR A 40 PHE A 44 TYR A 46 THR A 66 SITE 2 AC1 16 HIS A 76 GLN A 96 LYS A 127 VAL A 128 SITE 3 AC1 16 ARG A 133 VAL A 146 MET A 148 HIS A 158 SITE 4 AC1 16 LEU A 159 HOH A3428 HOH A3432 HOH A3482 SITE 1 AC2 6 HIS A 54 SER A 55 HOH A3324 HOH A3386 SITE 2 AC2 6 HOH A3407 HOH A3571 CRYST1 59.749 79.732 36.971 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027048 0.00000