HEADER TRANSFERASE 25-SEP-08 3EMV TITLE CRYSTAL STRUCTURE OF PLASMODIUM VIVAX PNP WITH SULPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE PHOSPHORYLASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE SEQUENCE WAS INITIALLY ASSIGNED AS URIDINE COMPND 8 PHOSPHORYLASE (IN GENOME DATABASE) HOMOLOGUE, BUT NOW IT IS WIDELY COMPND 9 CONSIDERED TO BE PURINE NUCLEOSIDE PHOSPHORYLASE. THEREFORE, THIS COMPND 10 PROTEIN SHOULD BE UNDER 2.4.2.1 NOT 2.4.2.3 AS IN THE DATABASE COMPND 11 REFERENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 5855; SOURCE 4 GENE: PVX_080575; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE, BINARY COMPLEX, PURINE NUCLEOSIDE PHOSPHORYLASE, URIDINE KEYWDS 2 PHOSPHORYLASE, PUTATIVE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,R.L.BRADY REVDAT 2 01-NOV-23 3EMV 1 REMARK SEQADV REVDAT 1 04-AUG-09 3EMV 0 JRNL AUTH A.CHAIKUAD,R.L.BRADY JRNL TITL CONSERVATION OF STRUCTURE AND ACTIVITY IN PLASMODIUM PURINE JRNL TITL 2 NUCLEOSIDE PHOSPHORYLASES JRNL REF BMC STRUCT.BIOL. V. 9 42 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19575810 JRNL DOI 10.1186/1472-6807-9-42 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.4 REMARK 3 NUMBER OF REFLECTIONS : 13860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 595 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1906 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.66000 REMARK 3 B22 (A**2) : -2.66000 REMARK 3 B33 (A**2) : 3.99000 REMARK 3 B12 (A**2) : -1.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1841 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2486 ; 1.611 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ;20.043 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;39.808 ;24.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;15.700 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1342 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 869 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1264 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 96 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1203 ; 0.712 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1882 ; 1.108 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 725 ; 1.896 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 603 ; 2.797 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0745 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI (111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14619 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 67.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : 0.23400 REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2B94 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 0.2M LISO4, 0.1M TRIS REMARK 280 -HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.37450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.35168 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.41800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.37450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.35168 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.41800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.37450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.35168 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.41800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.37450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.35168 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.41800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.37450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.35168 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.41800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.37450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.35168 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.41800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.70336 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.83600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.70336 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 80.83600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.70336 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.83600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.70336 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.83600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.70336 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 80.83600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.70336 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 80.83600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -210.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 285 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 316 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LYS A 212 REMARK 475 TRP A 213 REMARK 475 ASP A 214 REMARK 475 GLU A 215 REMARK 475 GLY A 216 REMARK 475 ASP A 217 REMARK 475 PHE A 218 REMARK 475 ASP A 219 REMARK 475 ASN A 220 REMARK 475 ASN A 221 REMARK 475 LEU A 222 REMARK 475 VAL A 223 REMARK 475 PRO A 224 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 246 CA CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 209 O HOH A 292 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 42 -66.66 -107.69 REMARK 500 ARG A 46 -136.70 49.96 REMARK 500 GLU A 115 49.75 -94.54 REMARK 500 ASP A 116 -168.54 -110.66 REMARK 500 GLU A 183 -154.25 -149.60 REMARK 500 LYS A 212 -155.83 132.85 REMARK 500 ASP A 214 118.74 118.01 REMARK 500 GLU A 215 112.99 120.71 REMARK 500 ASP A 217 20.68 39.15 REMARK 500 PHE A 218 -70.93 49.44 REMARK 500 ASP A 219 -144.50 130.28 REMARK 500 ASN A 220 68.00 -67.62 REMARK 500 LEU A 222 -119.51 66.49 REMARK 500 GLU A 225 -56.20 85.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 2 GLY A 3 149.57 REMARK 500 LEU A 211 LYS A 212 -135.70 REMARK 500 LYS A 212 TRP A 213 -128.68 REMARK 500 TRP A 213 ASP A 214 144.23 REMARK 500 ASP A 214 GLU A 215 104.58 REMARK 500 GLU A 215 GLY A 216 131.20 REMARK 500 GLY A 216 ASP A 217 93.66 REMARK 500 ASP A 217 PHE A 218 113.80 REMARK 500 ASP A 219 ASN A 220 -82.12 REMARK 500 ASN A 220 ASN A 221 130.80 REMARK 500 LEU A 222 VAL A 223 130.57 REMARK 500 PRO A 224 GLU A 225 148.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ENZ RELATED DB: PDB REMARK 900 PFPNP-HRA COMPLEX DBREF 3EMV A 1 245 UNP A5K9M4 A5K9M4_PLAVI 1 245 SEQADV 3EMV LEU A 246 UNP A5K9M4 EXPRESSION TAG SEQADV 3EMV GLU A 247 UNP A5K9M4 EXPRESSION TAG SEQADV 3EMV HIS A 248 UNP A5K9M4 EXPRESSION TAG SEQADV 3EMV HIS A 249 UNP A5K9M4 EXPRESSION TAG SEQADV 3EMV HIS A 250 UNP A5K9M4 EXPRESSION TAG SEQADV 3EMV HIS A 251 UNP A5K9M4 EXPRESSION TAG SEQADV 3EMV HIS A 252 UNP A5K9M4 EXPRESSION TAG SEQADV 3EMV HIS A 253 UNP A5K9M4 EXPRESSION TAG SEQRES 1 A 253 MET GLU GLY GLU MET GLN ARG HIS ILE LYS LEU THR LYS SEQRES 2 A 253 ALA GLN THR THR PRO VAL VAL LEU VAL VAL GLY ASP PRO SEQRES 3 A 253 GLY ARG VAL ASP LYS VAL LYS VAL LEU CYS ASP SER TYR SEQRES 4 A 253 VAL ASP LEU ALA TYR ASN ARG GLU TYR LYS SER VAL GLU SEQRES 5 A 253 CYS THR TYR LYS GLY GLN LYS PHE LEU CYS VAL SER HIS SEQRES 6 A 253 GLY VAL GLY SER ALA GLY CYS ALA ILE CYS PHE GLU GLU SEQRES 7 A 253 LEU MET ASN ASN GLY ALA LYS VAL ILE ILE ARG ALA GLY SEQRES 8 A 253 SER CYS GLY SER LEU GLN PRO THR GLN MET LYS ARG GLY SEQRES 9 A 253 ASP ILE CYS ILE CYS ASN ALA ALA VAL ARG GLU ASP ARG SEQRES 10 A 253 VAL SER HIS LEU MET ILE TYR SER ASP PHE PRO ALA VAL SEQRES 11 A 253 ALA ASP TYR GLU VAL TYR ALA THR LEU ASN GLN VAL ALA SEQRES 12 A 253 GLU GLU LEU LYS VAL PRO VAL PHE ASN GLY ILE SER LEU SEQRES 13 A 253 SER SER ASP MET TYR TYR PRO HIS LYS ILE ILE PRO THR SEQRES 14 A 253 ARG LEU GLU ASP TYR SER LYS ALA ASN VAL ALA VAL VAL SEQRES 15 A 253 GLU MET GLU VAL ALA THR LEU MET VAL MET GLY THR LEU SEQRES 16 A 253 ARG LYS VAL LYS THR GLY GLY ILE PHE ILE VAL ASP GLY SEQRES 17 A 253 CYS PRO LEU LYS TRP ASP GLU GLY ASP PHE ASP ASN ASN SEQRES 18 A 253 LEU VAL PRO GLU ARG LEU GLU ASN MET ILE LYS ILE SER SEQRES 19 A 253 LEU GLU THR CYS ALA ARG LEU ALA LYS LYS TYR LEU GLU SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS HET SO4 A 254 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *75(H2 O) HELIX 1 1 ASP A 25 VAL A 34 1 10 HELIX 2 2 GLY A 68 ASN A 82 1 15 HELIX 3 3 ARG A 117 ILE A 123 1 7 HELIX 4 4 ASP A 132 LEU A 146 1 15 HELIX 5 5 ARG A 170 ALA A 177 1 8 HELIX 6 6 GLU A 185 LYS A 197 1 13 HELIX 7 7 GLU A 225 TYR A 245 1 21 SHEET 1 A 9 SER A 38 ASN A 45 0 SHEET 2 A 9 TYR A 48 TYR A 55 -1 O SER A 50 N ALA A 43 SHEET 3 A 9 GLN A 58 SER A 64 -1 O PHE A 60 N CYS A 53 SHEET 4 A 9 VAL A 19 VAL A 23 1 N LEU A 21 O LEU A 61 SHEET 5 A 9 VAL A 86 SER A 95 1 O ILE A 88 N VAL A 22 SHEET 6 A 9 VAL A 181 GLU A 183 -1 O VAL A 182 N GLY A 94 SHEET 7 A 9 PHE A 151 SER A 158 1 N LEU A 156 O VAL A 181 SHEET 8 A 9 ILE A 106 GLU A 115 1 N ILE A 108 O PHE A 151 SHEET 9 A 9 ALA A 129 VAL A 130 -1 O ALA A 129 N ALA A 112 SHEET 1 B 8 SER A 38 ASN A 45 0 SHEET 2 B 8 TYR A 48 TYR A 55 -1 O SER A 50 N ALA A 43 SHEET 3 B 8 GLN A 58 SER A 64 -1 O PHE A 60 N CYS A 53 SHEET 4 B 8 VAL A 19 VAL A 23 1 N LEU A 21 O LEU A 61 SHEET 5 B 8 VAL A 86 SER A 95 1 O ILE A 88 N VAL A 22 SHEET 6 B 8 LYS A 199 GLY A 208 1 O LYS A 199 N ILE A 87 SHEET 7 B 8 ILE A 106 GLU A 115 -1 N CYS A 109 O GLY A 202 SHEET 8 B 8 ALA A 129 VAL A 130 -1 O ALA A 129 N ALA A 112 SITE 1 AC1 5 GLY A 24 ARG A 46 ARG A 89 GLY A 91 SITE 2 AC1 5 SER A 92 CRYST1 94.749 94.749 121.254 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010554 0.006093 0.000000 0.00000 SCALE2 0.000000 0.012187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008247 0.00000