HEADER TRANSFERASE 25-SEP-08 3EN6 TITLE TARGETED POLYPHARMACOLOGY: CRYSTAL STRUCTURE OF THE C-SRC KINASE TITLE 2 DOMAIN IN COMPLEX WITH PP102, A MULTITARGETED KINASE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: PP60C-SRC, P60-SRC, C-SRC; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SRC, TYROSINE, KINASE, POLYPHARMACOLOGY, INHIBITOR, MULTITARGET, KEYWDS 2 PHOSPHOINOSITIDE, TRANSFERASE, SIGNALING, PYRAZOLOPYRIMIDINE, KEYWDS 3 KINASE-INHIBITOR COMPLEX, ATP-BINDING, LIPOPROTEIN, MYRISTATE, KEYWDS 4 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTO-ONCOGENE, SH2 DOMAIN, SH3 KEYWDS 5 DOMAIN, TYROSINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.BLAIR,B.APSEL,Z.A.KNIGHT,K.M.SHOKAT REVDAT 8 21-FEB-24 3EN6 1 REMARK SEQADV REVDAT 7 25-OCT-17 3EN6 1 REMARK REVDAT 6 13-JUL-11 3EN6 1 VERSN REVDAT 5 05-MAY-09 3EN6 1 REMARK REVDAT 4 24-FEB-09 3EN6 1 VERSN REVDAT 3 04-NOV-08 3EN6 1 JRNL REVDAT 2 28-OCT-08 3EN6 1 JRNL REVDAT 1 14-OCT-08 3EN6 0 JRNL AUTH B.APSEL,J.A.BLAIR,B.GONZALEZ,T.M.NAZIF,M.E.FELDMAN, JRNL AUTH 2 B.AIZENSTEIN,R.HOFFMAN,R.L.WILLIAMS,K.M.SHOKAT,Z.A.KNIGHT JRNL TITL TARGETED POLYPHARMACOLOGY: DISCOVERY OF DUAL INHIBITORS OF JRNL TITL 2 TYROSINE AND PHOSPHOINOSITIDE KINASES. JRNL REF NAT.CHEM.BIOL. V. 4 691 2008 JRNL REFN ISSN 1552-4450 JRNL PMID 18849971 JRNL DOI 10.1038/NCHEMBIO.117 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 27021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1445 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1446 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3711 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.291 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3823 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5190 ; 1.659 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 6.270 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;36.246 ;23.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;15.494 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2877 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1655 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2586 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 104 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.087 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2366 ; 0.644 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3778 ; 1.178 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1457 ; 2.340 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 3.574 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4136 4.2348 15.2607 REMARK 3 T TENSOR REMARK 3 T11: 0.3959 T22: 0.2521 REMARK 3 T33: 0.0684 T12: -0.0461 REMARK 3 T13: -0.0383 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.8710 L22: 4.0800 REMARK 3 L33: 6.1349 L12: 0.4812 REMARK 3 L13: 0.1527 L23: 4.8673 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.2678 S13: 0.1809 REMARK 3 S21: 0.3746 S22: -0.2638 S23: 0.2236 REMARK 3 S31: 0.2466 S32: -0.1609 S33: 0.2107 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 343 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1526 -2.5415 -10.4710 REMARK 3 T TENSOR REMARK 3 T11: 0.0248 T22: 0.0666 REMARK 3 T33: 0.0773 T12: 0.0011 REMARK 3 T13: 0.0145 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.3939 L22: 2.7598 REMARK 3 L33: 1.3613 L12: -0.2896 REMARK 3 L13: -0.0254 L23: -0.1430 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: 0.0188 S13: -0.0068 REMARK 3 S21: 0.2252 S22: 0.0468 S23: 0.1125 REMARK 3 S31: -0.0844 S32: -0.1503 S33: -0.0190 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 248 B 342 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9952 -28.2155 -39.8342 REMARK 3 T TENSOR REMARK 3 T11: 0.4779 T22: 0.2951 REMARK 3 T33: 0.1648 T12: -0.0047 REMARK 3 T13: -0.0724 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.5731 L22: 1.7542 REMARK 3 L33: 7.4043 L12: -1.3787 REMARK 3 L13: -1.6607 L23: 1.6699 REMARK 3 S TENSOR REMARK 3 S11: 0.2817 S12: 0.5924 S13: 0.1925 REMARK 3 S21: -0.7503 S22: -0.1555 S23: 0.0194 REMARK 3 S31: -0.9158 S32: -0.2234 S33: -0.1262 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 343 B 533 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1699 -34.1972 -14.8944 REMARK 3 T TENSOR REMARK 3 T11: 0.0112 T22: 0.0602 REMARK 3 T33: 0.0759 T12: 0.0123 REMARK 3 T13: 0.0030 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.0963 L22: 2.6000 REMARK 3 L33: 1.6470 L12: 0.4080 REMARK 3 L13: -0.1392 L23: 0.2514 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: -0.0215 S13: -0.1016 REMARK 3 S21: -0.1449 S22: 0.0047 S23: -0.0132 REMARK 3 S31: 0.0221 S32: 0.1065 S33: 0.0523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28471 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4750 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14 MG/ML KINASE, 50 MM TRIS-HCL, 100 REMARK 280 MM NACL, 5% (V/V) GLYCEROL MIXED 1:1 WITH 20% (W/V) GLYCEROL REMARK 280 PRECIPITANT WELL SOLUTION, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 HIS A 249 REMARK 465 MET A 250 REMARK 465 GLN A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 LEU A 255 REMARK 465 ALA A 256 REMARK 465 LYS A 257 REMARK 465 ASP A 258 REMARK 465 ALA A 259 REMARK 465 GLY A 276 REMARK 465 CYS A 277 REMARK 465 PHE A 278 REMARK 465 LYS A 298 REMARK 465 PRO A 299 REMARK 465 GLY A 300 REMARK 465 THR A 301 REMARK 465 MET A 302 REMARK 465 SER A 303 REMARK 465 PRO A 304 REMARK 465 GLU A 305 REMARK 465 ALA A 306 REMARK 465 PHE A 307 REMARK 465 LEU A 308 REMARK 465 GLN A 309 REMARK 465 GLU A 310 REMARK 465 ALA A 311 REMARK 465 ASP A 404 REMARK 465 PHE A 405 REMARK 465 GLY A 406 REMARK 465 LEU A 407 REMARK 465 ALA A 408 REMARK 465 ARG A 409 REMARK 465 LEU A 410 REMARK 465 ILE A 411 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLN A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 PHE A 424 REMARK 465 GLY B 248 REMARK 465 HIS B 249 REMARK 465 MET B 250 REMARK 465 GLN B 251 REMARK 465 THR B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 LEU B 255 REMARK 465 ALA B 256 REMARK 465 GLY B 276 REMARK 465 CYS B 277 REMARK 465 LYS B 298 REMARK 465 PRO B 299 REMARK 465 GLY B 300 REMARK 465 THR B 301 REMARK 465 MET B 302 REMARK 465 SER B 303 REMARK 465 PRO B 304 REMARK 465 GLU B 305 REMARK 465 ALA B 306 REMARK 465 PHE B 307 REMARK 465 LEU B 308 REMARK 465 GLN B 309 REMARK 465 GLU B 310 REMARK 465 GLU B 331 REMARK 465 GLU B 332 REMARK 465 PRO B 333 REMARK 465 GLY B 406 REMARK 465 LEU B 407 REMARK 465 ALA B 408 REMARK 465 ARG B 409 REMARK 465 LEU B 410 REMARK 465 ILE B 411 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLN B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 465 PHE B 424 REMARK 465 PRO B 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 THR A 289 OG1 CG2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LEU A 297 CG CD1 CD2 REMARK 470 GLN A 312 CG CD OE1 NE2 REMARK 470 VAL A 313 CG1 CG2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 SER A 330 OG REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 ASN A 381 CG OD1 ND2 REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 ASP A 502 CG OD1 OD2 REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 GLN A 526 CG CD OE1 NE2 REMARK 470 GLU A 531 CG CD OE1 OE2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 ILE B 262 CG1 CG2 CD1 REMARK 470 GLU B 265 CG CD OE1 OE2 REMARK 470 LEU B 267 CG CD1 CD2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 275 CG CD OE1 NE2 REMARK 470 PHE B 278 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 THR B 289 OG1 CG2 REMARK 470 LEU B 297 CG CD1 CD2 REMARK 470 GLN B 312 CG CD OE1 NE2 REMARK 470 VAL B 313 CG1 CG2 REMARK 470 SER B 330 OG REMARK 470 ILE B 334 CG1 CG2 CD1 REMARK 470 ILE B 426 CG1 CG2 CD1 REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 GLU B 510 CG CD OE1 OE2 REMARK 470 GLN B 526 CG CD OE1 NE2 REMARK 470 GLU B 531 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 289 -37.89 -145.64 REMARK 500 ARG A 385 -24.86 89.89 REMARK 500 ARG A 388 164.86 179.75 REMARK 500 TYR A 527 133.74 -39.91 REMARK 500 GLU B 270 -56.77 -123.53 REMARK 500 ARG B 385 -19.17 87.09 REMARK 500 ARG B 388 148.13 -173.92 REMARK 500 ASP B 404 71.11 65.82 REMARK 500 GLU B 486 -0.07 67.65 REMARK 500 THR B 523 -53.04 -121.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KS5 B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EN4 RELATED DB: PDB REMARK 900 RELATED ID: 3EN5 RELATED DB: PDB REMARK 900 RELATED ID: 3EN7 RELATED DB: PDB DBREF 3EN6 A 251 533 UNP P00523 SRC_CHICK 251 533 DBREF 3EN6 B 251 533 UNP P00523 SRC_CHICK 251 533 SEQADV 3EN6 GLY A 248 UNP P00523 EXPRESSION TAG SEQADV 3EN6 HIS A 249 UNP P00523 EXPRESSION TAG SEQADV 3EN6 MET A 250 UNP P00523 EXPRESSION TAG SEQADV 3EN6 GLY B 248 UNP P00523 EXPRESSION TAG SEQADV 3EN6 HIS B 249 UNP P00523 EXPRESSION TAG SEQADV 3EN6 MET B 250 UNP P00523 EXPRESSION TAG SEQRES 1 A 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 A 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 A 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 A 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 A 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 A 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 A 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 A 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 A 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 A 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 A 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 A 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 A 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 A 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 A 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 A 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 A 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 A 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 A 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 A 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 A 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 A 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 B 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 B 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 B 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 B 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 B 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 B 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 B 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 B 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 B 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 B 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 B 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 B 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 B 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 B 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 B 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 B 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 B 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 B 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 B 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 B 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 B 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU HET KS5 B 2 23 HETNAM KS5 1-(1-METHYLETHYL)-3-QUINOLIN-6-YL-1H-PYRAZOLO[3,4- HETNAM 2 KS5 D]PYRIMIDIN-4-AMINE FORMUL 3 KS5 C17 H16 N6 FORMUL 4 HOH *15(H2 O) HELIX 1 1 PRO A 263 GLU A 265 5 3 HELIX 2 2 GLN A 312 LEU A 317 1 6 HELIX 3 3 SER A 345 GLY A 352 1 8 HELIX 4 4 ARG A 359 MET A 380 1 22 HELIX 5 5 ARG A 388 ALA A 390 5 3 HELIX 6 6 GLU A 396 LEU A 398 5 3 HELIX 7 7 PRO A 425 THR A 429 5 5 HELIX 8 8 ALA A 430 GLY A 437 1 8 HELIX 9 9 THR A 440 THR A 457 1 18 HELIX 10 10 VAL A 467 ARG A 477 1 11 HELIX 11 11 PRO A 488 TRP A 499 1 12 HELIX 12 12 ASP A 502 ARG A 506 5 5 HELIX 13 13 THR A 508 ASP A 518 1 11 HELIX 14 14 ASP A 518 THR A 523 1 6 HELIX 15 15 PRO B 263 GLU B 265 5 3 HELIX 16 16 ALA B 311 LEU B 317 1 7 HELIX 17 17 SER B 345 LYS B 351 1 7 HELIX 18 18 GLY B 352 TYR B 357 5 6 HELIX 19 19 ARG B 359 ASN B 381 1 23 HELIX 20 20 ARG B 388 ALA B 390 5 3 HELIX 21 21 GLU B 396 LEU B 398 5 3 HELIX 22 22 ALA B 430 GLY B 437 1 8 HELIX 23 23 THR B 440 THR B 457 1 18 HELIX 24 24 VAL B 467 ARG B 477 1 11 HELIX 25 25 PRO B 488 TRP B 499 1 12 HELIX 26 26 ASP B 502 ARG B 506 5 5 HELIX 27 27 THR B 508 THR B 523 1 16 SHEET 1 A 5 LEU A 267 GLY A 274 0 SHEET 2 A 5 VAL A 281 TRP A 286 -1 O VAL A 281 N LEU A 273 SHEET 3 A 5 THR A 290 THR A 296 -1 O ILE A 294 N TRP A 282 SHEET 4 A 5 TYR A 335 THR A 338 -1 O THR A 338 N ALA A 293 SHEET 5 A 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337 SHEET 1 B 2 ILE A 392 VAL A 394 0 SHEET 2 B 2 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 C 5 LEU B 267 GLY B 274 0 SHEET 2 C 5 GLU B 280 TRP B 286 -1 O MET B 283 N VAL B 271 SHEET 3 C 5 THR B 290 THR B 296 -1 O THR B 290 N TRP B 286 SHEET 4 C 5 TYR B 335 THR B 338 -1 O THR B 338 N ALA B 293 SHEET 5 C 5 LEU B 325 VAL B 329 -1 N TYR B 326 O VAL B 337 SHEET 1 D 2 ILE B 392 VAL B 394 0 SHEET 2 D 2 CYS B 400 VAL B 402 -1 O LYS B 401 N LEU B 393 CISPEP 1 GLU A 332 PRO A 333 0 -8.80 SITE 1 AC1 8 VAL B 281 ALA B 293 LYS B 295 THR B 338 SITE 2 AC1 8 GLU B 339 TYR B 340 MET B 341 SER B 345 CRYST1 42.439 63.046 74.579 101.31 91.17 89.62 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023563 -0.000156 0.000460 0.00000 SCALE2 0.000000 0.015862 0.003171 0.00000 SCALE3 0.000000 0.000000 0.013677 0.00000