data_3EN8 # _entry.id 3EN8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EN8 pdb_00003en8 10.2210/pdb3en8/pdb RCSB RCSB049534 ? ? WWPDB D_1000049534 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390635 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3EN8 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of NTF-2 like protein of unknown function (YP_553245.1) from BURKHOLDERIA XENOVORANS LB400 at 1.85 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3EN8 _cell.length_a 61.507 _cell.length_b 60.329 _cell.length_c 92.614 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EN8 _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized NTF-2 like protein' 14830.858 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 6 water nat water 18.015 129 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)REEKIREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGR(MSE)NLQALRSHHPGKPAGFEVRRIQG EGNLWITEYSISYNGRPAYTVSI(MSE)EFRNGKVVHETQYFSDPFEAPGWRSQWVQQIG ; _entity_poly.pdbx_seq_one_letter_code_can ;GMREEKIREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGRMNLQALRSHHPGKPAGFEVRRIQGEGNLWITE YSISYNGRPAYTVSIMEFRNGKVVHETQYFSDPFEAPGWRSQWVQQIG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 390635 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ARG n 1 4 GLU n 1 5 GLU n 1 6 LYS n 1 7 ILE n 1 8 ARG n 1 9 GLU n 1 10 ALA n 1 11 LEU n 1 12 ASN n 1 13 ALA n 1 14 HIS n 1 15 TRP n 1 16 GLN n 1 17 ALA n 1 18 SER n 1 19 ALA n 1 20 ALA n 1 21 GLY n 1 22 ASP n 1 23 PHE n 1 24 ASP n 1 25 ALA n 1 26 GLU n 1 27 HIS n 1 28 ASP n 1 29 ILE n 1 30 TYR n 1 31 ASP n 1 32 ASP n 1 33 ASP n 1 34 ALA n 1 35 ILE n 1 36 CYS n 1 37 ASP n 1 38 TYR n 1 39 PRO n 1 40 GLN n 1 41 SER n 1 42 GLY n 1 43 GLU n 1 44 ARG n 1 45 ILE n 1 46 LEU n 1 47 GLY n 1 48 ARG n 1 49 MSE n 1 50 ASN n 1 51 LEU n 1 52 GLN n 1 53 ALA n 1 54 LEU n 1 55 ARG n 1 56 SER n 1 57 HIS n 1 58 HIS n 1 59 PRO n 1 60 GLY n 1 61 LYS n 1 62 PRO n 1 63 ALA n 1 64 GLY n 1 65 PHE n 1 66 GLU n 1 67 VAL n 1 68 ARG n 1 69 ARG n 1 70 ILE n 1 71 GLN n 1 72 GLY n 1 73 GLU n 1 74 GLY n 1 75 ASN n 1 76 LEU n 1 77 TRP n 1 78 ILE n 1 79 THR n 1 80 GLU n 1 81 TYR n 1 82 SER n 1 83 ILE n 1 84 SER n 1 85 TYR n 1 86 ASN n 1 87 GLY n 1 88 ARG n 1 89 PRO n 1 90 ALA n 1 91 TYR n 1 92 THR n 1 93 VAL n 1 94 SER n 1 95 ILE n 1 96 MSE n 1 97 GLU n 1 98 PHE n 1 99 ARG n 1 100 ASN n 1 101 GLY n 1 102 LYS n 1 103 VAL n 1 104 VAL n 1 105 HIS n 1 106 GLU n 1 107 THR n 1 108 GLN n 1 109 TYR n 1 110 PHE n 1 111 SER n 1 112 ASP n 1 113 PRO n 1 114 PHE n 1 115 GLU n 1 116 ALA n 1 117 PRO n 1 118 GLY n 1 119 TRP n 1 120 ARG n 1 121 SER n 1 122 GLN n 1 123 TRP n 1 124 VAL n 1 125 GLN n 1 126 GLN n 1 127 ILE n 1 128 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_553245.1, Bxeno_B0927, Bxe_B2092' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia xenovorans LB400' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 266265 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q13PU4_BURXL _struct_ref.pdbx_db_accession Q13PU4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MREEKIREALNAHWQASAAGDFDAEHDIYDDDAICDYPQSGERILGRMNLQALRSHHPGKPAGFEVRRIQGEGNLWITEY SISYNGRPAYTVSIMEFRNGKVVHETQYFSDPFEAPGWRSQWVQQIG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EN8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q13PU4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 127 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 127 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3EN8 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q13PU4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3EN8 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.90 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M Ca(OAc)2, 40.0000% PEG-600, 0.1M Cacodylate pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-08-03 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97920 1.0 3 0.97934 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97920,0.97934 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3EN8 _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 29.185 _reflns.number_obs 15025 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_netI_over_sigmaI 5.802 _reflns.pdbx_Rsym_value 0.090 _reflns.pdbx_redundancy 3.400 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 17.556 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.85 1.90 ? 3733 ? 0.373 2.1 0.373 ? 3.40 ? 1098 99.30 1 1 1.90 1.95 ? 3605 ? 0.270 2.8 0.270 ? 3.40 ? 1063 99.20 2 1 1.95 2.01 ? 3549 ? 0.218 3.4 0.218 ? 3.50 ? 1018 99.40 3 1 2.01 2.07 ? 3540 ? 0.182 4.0 0.182 ? 3.50 ? 1009 99.60 4 1 2.07 2.14 ? 3421 ? 0.172 4.2 0.172 ? 3.50 ? 976 99.70 5 1 2.14 2.21 ? 3341 ? 0.150 4.8 0.150 ? 3.50 ? 954 99.80 6 1 2.21 2.29 ? 3229 ? 0.137 5.2 0.137 ? 3.50 ? 915 99.80 7 1 2.29 2.39 ? 3112 ? 0.126 5.6 0.126 ? 3.50 ? 884 99.70 8 1 2.39 2.49 ? 2939 ? 0.112 6.3 0.112 ? 3.50 ? 843 100.00 9 1 2.49 2.62 ? 2817 ? 0.101 6.5 0.101 ? 3.50 ? 810 99.80 10 1 2.62 2.76 ? 2718 ? 0.093 7.3 0.093 ? 3.50 ? 784 99.90 11 1 2.76 2.93 ? 2531 ? 0.089 7.3 0.089 ? 3.40 ? 736 99.90 12 1 2.93 3.13 ? 2351 ? 0.077 8.2 0.077 ? 3.40 ? 694 99.80 13 1 3.13 3.38 ? 2166 ? 0.064 9.3 0.064 ? 3.30 ? 649 99.90 14 1 3.38 3.70 ? 1955 ? 0.060 9.5 0.060 ? 3.30 ? 600 99.80 15 1 3.70 4.14 ? 1754 ? 0.056 10.3 0.056 ? 3.20 ? 545 100.00 16 1 4.14 4.78 ? 1571 ? 0.060 9.4 0.060 ? 3.20 ? 497 100.00 17 1 4.78 5.85 ? 1285 ? 0.066 8.2 0.066 ? 3.10 ? 417 100.00 18 1 5.85 8.27 ? 1038 ? 0.072 6.6 0.072 ? 3.10 ? 335 100.00 19 1 8.27 29.19 ? 549 ? 0.061 7.8 0.061 ? 2.80 ? 198 97.30 20 1 # _refine.entry_id 3EN8 _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 29.185 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.520 _refine.ls_number_reflns_obs 15003 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;(1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. (3). ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. (4). CA ION AND ACETATE ION (ACT) AND PEG 600 FRAGMENT (PEG AND PG4) WERE MODELED BASED ON CRYSTALLIZATION CONDITION. ; _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_R_work 0.185 _refine.ls_R_factor_R_free 0.228 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 760 _refine.B_iso_mean 21.351 _refine.aniso_B[1][1] 0.310 _refine.aniso_B[2][2] -0.390 _refine.aniso_B[3][3] 0.080 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.pdbx_overall_ESU_R 0.127 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.overall_SU_ML 0.073 _refine.overall_SU_B 4.475 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.B_iso_max 68.57 _refine.B_iso_min 8.66 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1024 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1178 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 29.185 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1134 0.016 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 788 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1526 1.362 1.939 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1901 1.332 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 136 6.269 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 61 37.701 24.098 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 173 11.167 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 14.309 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 144 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1295 0.008 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 241 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 669 1.649 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 271 0.521 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1068 2.565 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 465 3.359 5.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 458 5.018 8.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.000 _refine_ls_shell.number_reflns_R_work 1030 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.194 _refine_ls_shell.R_factor_R_free 0.247 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1094 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EN8 _struct.title 'Crystal structure of NTF-2 like protein of unknown function (YP_553245.1) from BURKHOLDERIA XENOVORANS LB400 at 1.85 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_553245.1, NTF-2 like protein of unknown function, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.entry_id 3EN8 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 2 ? GLY A 21 ? MSE A 1 GLY A 20 1 ? 20 HELX_P HELX_P2 2 ASP A 22 ? HIS A 27 ? ASP A 21 HIS A 26 1 ? 6 HELX_P HELX_P3 3 GLY A 47 ? HIS A 58 ? GLY A 46 HIS A 57 1 ? 12 HELX_P HELX_P4 4 PRO A 117 ? VAL A 124 ? PRO A 116 VAL A 123 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ARG 3 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A ARG 48 C A ? ? 1_555 A MSE 49 N A ? A ARG 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A ARG 48 C B ? ? 1_555 A MSE 49 N B ? A ARG 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A MSE 49 C A ? ? 1_555 A ASN 50 N ? ? A MSE 48 A ASN 49 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale6 covale both ? A MSE 49 C B ? ? 1_555 A ASN 50 N ? ? A MSE 48 A ASN 49 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? A ILE 95 C ? ? ? 1_555 A MSE 96 N ? ? A ILE 94 A MSE 95 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A MSE 96 C ? ? ? 1_555 A GLU 97 N ? ? A MSE 95 A GLU 96 1_555 ? ? ? ? ? ? ? 1.318 ? ? metalc1 metalc ? ? A ASP 32 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 31 A CA 128 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc2 metalc ? ? A ASP 33 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 32 A CA 128 1_555 ? ? ? ? ? ? ? 2.993 ? ? metalc3 metalc ? ? A ASP 33 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 32 A CA 128 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 128 A HOH 178 1_555 ? ? ? ? ? ? ? 2.342 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 58 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 57 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 59 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 58 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 10.90 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 44 ? LEU A 46 ? ARG A 43 LEU A 45 A 2 TYR A 30 ? ASP A 37 ? TYR A 29 ASP A 36 A 3 LYS A 102 ? SER A 111 ? LYS A 101 SER A 110 A 4 ARG A 88 ? ARG A 99 ? ARG A 87 ARG A 98 A 5 LEU A 76 ? TYR A 85 ? LEU A 75 TYR A 84 A 6 GLY A 64 ? GLU A 73 ? GLY A 63 GLU A 72 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 45 ? O ILE A 44 N CYS A 36 ? N CYS A 35 A 2 3 N ASP A 31 ? N ASP A 30 O VAL A 103 ? O VAL A 102 A 3 4 O VAL A 104 ? O VAL A 103 N GLU A 97 ? N GLU A 96 A 4 5 O MSE A 96 ? O MSE A 95 N TRP A 77 ? N TRP A 76 A 5 6 O GLU A 80 ? O GLU A 79 N ARG A 69 ? N ARG A 68 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 128 ? 5 'BINDING SITE FOR RESIDUE CA A 128' AC2 Software A ACT 129 ? 5 'BINDING SITE FOR RESIDUE ACT A 129' AC3 Software A PEG 130 ? 3 'BINDING SITE FOR RESIDUE PEG A 130' AC4 Software A PG4 131 ? 6 'BINDING SITE FOR RESIDUE PG4 A 131' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 31 ? ASP A 30 . ? 4_555 ? 2 AC1 5 ASP A 32 ? ASP A 31 . ? 4_555 ? 3 AC1 5 ASP A 33 ? ASP A 32 . ? 4_555 ? 4 AC1 5 HOH F . ? HOH A 178 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 191 . ? 4_555 ? 6 AC2 5 ILE A 35 ? ILE A 34 . ? 1_555 ? 7 AC2 5 VAL A 104 ? VAL A 103 . ? 1_555 ? 8 AC2 5 HOH F . ? HOH A 155 . ? 1_555 ? 9 AC2 5 HOH F . ? HOH A 226 . ? 1_555 ? 10 AC2 5 HOH F . ? HOH A 253 . ? 1_555 ? 11 AC3 3 LEU A 54 ? LEU A 53 . ? 1_555 ? 12 AC3 3 HIS A 57 ? HIS A 56 . ? 1_555 ? 13 AC3 3 TRP A 123 ? TRP A 122 . ? 3_555 ? 14 AC4 6 ALA A 90 ? ALA A 89 . ? 1_555 ? 15 AC4 6 PHE A 110 ? PHE A 109 . ? 1_555 ? 16 AC4 6 ASP A 112 ? ASP A 111 . ? 1_555 ? 17 AC4 6 PHE A 114 ? PHE A 113 . ? 3_555 ? 18 AC4 6 GLU A 115 ? GLU A 114 . ? 3_555 ? 19 AC4 6 ARG A 120 ? ARG A 119 . ? 3_555 ? # _atom_sites.entry_id 3EN8 _atom_sites.fract_transf_matrix[1][1] 0.016258 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016576 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010797 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ARG 3 2 2 ARG ARG A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 ASN 12 11 11 ASN ASN A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 HIS 14 13 13 HIS HIS A . n A 1 15 TRP 15 14 14 TRP TRP A . n A 1 16 GLN 16 15 15 GLN GLN A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 PHE 23 22 22 PHE PHE A . n A 1 24 ASP 24 23 23 ASP ASP A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 GLU 26 25 25 GLU GLU A . n A 1 27 HIS 27 26 26 HIS HIS A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 TYR 30 29 29 TYR TYR A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 ASP 32 31 31 ASP ASP A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 ILE 35 34 34 ILE ILE A . n A 1 36 CYS 36 35 35 CYS CYS A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 TYR 38 37 37 TYR TYR A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 GLN 40 39 39 GLN GLN A . n A 1 41 SER 41 40 40 SER SER A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 ILE 45 44 44 ILE ILE A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 ARG 48 47 47 ARG ARG A . n A 1 49 MSE 49 48 48 MSE MSE A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ARG 55 54 54 ARG ARG A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 HIS 57 56 56 HIS HIS A . n A 1 58 HIS 58 57 57 HIS HIS A . n A 1 59 PRO 59 58 58 PRO PRO A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 PRO 62 61 61 PRO PRO A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 GLY 64 63 63 GLY GLY A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 ARG 68 67 67 ARG ARG A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 ASN 75 74 74 ASN ASN A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 TRP 77 76 76 TRP TRP A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 THR 79 78 78 THR THR A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 TYR 81 80 80 TYR TYR A . n A 1 82 SER 82 81 81 SER SER A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 SER 84 83 83 SER SER A . n A 1 85 TYR 85 84 84 TYR TYR A . n A 1 86 ASN 86 85 85 ASN ASN A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 PRO 89 88 88 PRO PRO A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 THR 92 91 91 THR THR A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 MSE 96 95 95 MSE MSE A . n A 1 97 GLU 97 96 96 GLU GLU A . n A 1 98 PHE 98 97 97 PHE PHE A . n A 1 99 ARG 99 98 98 ARG ARG A . n A 1 100 ASN 100 99 99 ASN ASN A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 LYS 102 101 101 LYS LYS A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 HIS 105 104 104 HIS HIS A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 GLN 108 107 107 GLN GLN A . n A 1 109 TYR 109 108 108 TYR TYR A . n A 1 110 PHE 110 109 109 PHE PHE A . n A 1 111 SER 111 110 110 SER SER A . n A 1 112 ASP 112 111 111 ASP ASP A . n A 1 113 PRO 113 112 112 PRO PRO A . n A 1 114 PHE 114 113 113 PHE PHE A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 PRO 117 116 116 PRO PRO A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 TRP 119 118 118 TRP TRP A . n A 1 120 ARG 120 119 119 ARG ARG A . n A 1 121 SER 121 120 120 SER SER A . n A 1 122 GLN 122 121 121 GLN GLN A . n A 1 123 TRP 123 122 122 TRP TRP A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 GLN 125 124 124 GLN GLN A . n A 1 126 GLN 126 125 125 GLN GLN A . n A 1 127 ILE 127 126 126 ILE ILE A . n A 1 128 GLY 128 127 127 GLY GLY A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 128 1 CA CA A . C 3 ACT 1 129 2 ACT ACT A . D 4 PEG 1 130 3 PEG PEG A . E 5 PG4 1 131 4 PG4 PG4 A . F 6 HOH 1 132 5 HOH HOH A . F 6 HOH 2 133 6 HOH HOH A . F 6 HOH 3 134 7 HOH HOH A . F 6 HOH 4 135 8 HOH HOH A . F 6 HOH 5 136 9 HOH HOH A . F 6 HOH 6 137 10 HOH HOH A . F 6 HOH 7 138 11 HOH HOH A . F 6 HOH 8 139 12 HOH HOH A . F 6 HOH 9 140 13 HOH HOH A . F 6 HOH 10 141 14 HOH HOH A . F 6 HOH 11 142 15 HOH HOH A . F 6 HOH 12 143 16 HOH HOH A . F 6 HOH 13 144 17 HOH HOH A . F 6 HOH 14 145 18 HOH HOH A . F 6 HOH 15 146 19 HOH HOH A . F 6 HOH 16 147 20 HOH HOH A . F 6 HOH 17 148 21 HOH HOH A . F 6 HOH 18 149 22 HOH HOH A . F 6 HOH 19 150 23 HOH HOH A . F 6 HOH 20 151 24 HOH HOH A . F 6 HOH 21 152 25 HOH HOH A . F 6 HOH 22 153 26 HOH HOH A . F 6 HOH 23 154 27 HOH HOH A . F 6 HOH 24 155 28 HOH HOH A . F 6 HOH 25 156 29 HOH HOH A . F 6 HOH 26 157 30 HOH HOH A . F 6 HOH 27 158 31 HOH HOH A . F 6 HOH 28 159 32 HOH HOH A . F 6 HOH 29 160 33 HOH HOH A . F 6 HOH 30 161 34 HOH HOH A . F 6 HOH 31 162 35 HOH HOH A . F 6 HOH 32 163 36 HOH HOH A . F 6 HOH 33 164 37 HOH HOH A . F 6 HOH 34 165 38 HOH HOH A . F 6 HOH 35 166 39 HOH HOH A . F 6 HOH 36 167 40 HOH HOH A . F 6 HOH 37 168 41 HOH HOH A . F 6 HOH 38 169 42 HOH HOH A . F 6 HOH 39 170 43 HOH HOH A . F 6 HOH 40 171 44 HOH HOH A . F 6 HOH 41 172 55 HOH HOH A . F 6 HOH 42 173 56 HOH HOH A . F 6 HOH 43 174 57 HOH HOH A . F 6 HOH 44 175 58 HOH HOH A . F 6 HOH 45 176 59 HOH HOH A . F 6 HOH 46 177 60 HOH HOH A . F 6 HOH 47 178 61 HOH HOH A . F 6 HOH 48 179 62 HOH HOH A . F 6 HOH 49 180 63 HOH HOH A . F 6 HOH 50 181 64 HOH HOH A . F 6 HOH 51 182 65 HOH HOH A . F 6 HOH 52 183 66 HOH HOH A . F 6 HOH 53 184 67 HOH HOH A . F 6 HOH 54 185 68 HOH HOH A . F 6 HOH 55 186 69 HOH HOH A . F 6 HOH 56 187 70 HOH HOH A . F 6 HOH 57 188 71 HOH HOH A . F 6 HOH 58 189 72 HOH HOH A . F 6 HOH 59 190 73 HOH HOH A . F 6 HOH 60 191 74 HOH HOH A . F 6 HOH 61 192 75 HOH HOH A . F 6 HOH 62 193 76 HOH HOH A . F 6 HOH 63 194 77 HOH HOH A . F 6 HOH 64 195 78 HOH HOH A . F 6 HOH 65 196 79 HOH HOH A . F 6 HOH 66 197 80 HOH HOH A . F 6 HOH 67 198 81 HOH HOH A . F 6 HOH 68 199 82 HOH HOH A . F 6 HOH 69 200 83 HOH HOH A . F 6 HOH 70 201 84 HOH HOH A . F 6 HOH 71 202 85 HOH HOH A . F 6 HOH 72 203 86 HOH HOH A . F 6 HOH 73 204 87 HOH HOH A . F 6 HOH 74 205 88 HOH HOH A . F 6 HOH 75 206 89 HOH HOH A . F 6 HOH 76 207 90 HOH HOH A . F 6 HOH 77 208 91 HOH HOH A . F 6 HOH 78 209 92 HOH HOH A . F 6 HOH 79 210 93 HOH HOH A . F 6 HOH 80 211 94 HOH HOH A . F 6 HOH 81 212 95 HOH HOH A . F 6 HOH 82 213 96 HOH HOH A . F 6 HOH 83 214 97 HOH HOH A . F 6 HOH 84 215 98 HOH HOH A . F 6 HOH 85 216 99 HOH HOH A . F 6 HOH 86 217 100 HOH HOH A . F 6 HOH 87 218 101 HOH HOH A . F 6 HOH 88 219 102 HOH HOH A . F 6 HOH 89 220 103 HOH HOH A . F 6 HOH 90 221 104 HOH HOH A . F 6 HOH 91 222 105 HOH HOH A . F 6 HOH 92 223 106 HOH HOH A . F 6 HOH 93 224 107 HOH HOH A . F 6 HOH 94 225 108 HOH HOH A . F 6 HOH 95 226 109 HOH HOH A . F 6 HOH 96 227 110 HOH HOH A . F 6 HOH 97 228 111 HOH HOH A . F 6 HOH 98 229 112 HOH HOH A . F 6 HOH 99 230 113 HOH HOH A . F 6 HOH 100 231 114 HOH HOH A . F 6 HOH 101 232 115 HOH HOH A . F 6 HOH 102 233 116 HOH HOH A . F 6 HOH 103 234 117 HOH HOH A . F 6 HOH 104 235 118 HOH HOH A . F 6 HOH 105 236 119 HOH HOH A . F 6 HOH 106 237 120 HOH HOH A . F 6 HOH 107 238 121 HOH HOH A . F 6 HOH 108 239 122 HOH HOH A . F 6 HOH 109 240 123 HOH HOH A . F 6 HOH 110 241 124 HOH HOH A . F 6 HOH 111 242 125 HOH HOH A . F 6 HOH 112 243 126 HOH HOH A . F 6 HOH 113 244 127 HOH HOH A . F 6 HOH 114 245 128 HOH HOH A . F 6 HOH 115 246 129 HOH HOH A . F 6 HOH 116 247 130 HOH HOH A . F 6 HOH 117 248 131 HOH HOH A . F 6 HOH 118 249 132 HOH HOH A . F 6 HOH 119 250 133 HOH HOH A . F 6 HOH 120 251 134 HOH HOH A . F 6 HOH 121 252 135 HOH HOH A . F 6 HOH 122 253 136 HOH HOH A . F 6 HOH 123 254 137 HOH HOH A . F 6 HOH 124 255 138 HOH HOH A . F 6 HOH 125 256 139 HOH HOH A . F 6 HOH 126 257 140 HOH HOH A . F 6 HOH 127 258 141 HOH HOH A . F 6 HOH 128 259 142 HOH HOH A . F 6 HOH 129 260 143 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 49 A MSE 48 ? MET SELENOMETHIONINE 3 A MSE 96 A MSE 95 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6510 ? 1 MORE -21 ? 1 'SSA (A^2)' 11980 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 46.3070000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 32 ? A ASP 31 ? 1_555 CA ? B CA . ? A CA 128 ? 1_555 OD1 ? A ASP 33 ? A ASP 32 ? 1_555 83.0 ? 2 OD2 ? A ASP 32 ? A ASP 31 ? 1_555 CA ? B CA . ? A CA 128 ? 1_555 OD2 ? A ASP 33 ? A ASP 32 ? 1_555 88.7 ? 3 OD1 ? A ASP 33 ? A ASP 32 ? 1_555 CA ? B CA . ? A CA 128 ? 1_555 OD2 ? A ASP 33 ? A ASP 32 ? 1_555 45.7 ? 4 OD2 ? A ASP 32 ? A ASP 31 ? 1_555 CA ? B CA . ? A CA 128 ? 1_555 O ? F HOH . ? A HOH 178 ? 1_555 101.3 ? 5 OD1 ? A ASP 33 ? A ASP 32 ? 1_555 CA ? B CA . ? A CA 128 ? 1_555 O ? F HOH . ? A HOH 178 ? 1_555 57.5 ? 6 OD2 ? A ASP 33 ? A ASP 32 ? 1_555 CA ? B CA . ? A CA 128 ? 1_555 O ? F HOH . ? A HOH 178 ? 1_555 100.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 7.3098 _pdbx_refine_tls.origin_y 11.0523 _pdbx_refine_tls.origin_z 18.5630 _pdbx_refine_tls.T[1][1] -0.0372 _pdbx_refine_tls.T[2][2] -0.0707 _pdbx_refine_tls.T[3][3] -0.0315 _pdbx_refine_tls.T[1][2] -0.0188 _pdbx_refine_tls.T[1][3] 0.0059 _pdbx_refine_tls.T[2][3] 0.0025 _pdbx_refine_tls.L[1][1] 1.4229 _pdbx_refine_tls.L[2][2] 1.5327 _pdbx_refine_tls.L[3][3] 0.6255 _pdbx_refine_tls.L[1][2] -0.0846 _pdbx_refine_tls.L[1][3] 0.1567 _pdbx_refine_tls.L[2][3] 0.1588 _pdbx_refine_tls.S[1][1] -0.0007 _pdbx_refine_tls.S[2][2] -0.0124 _pdbx_refine_tls.S[3][3] 0.0131 _pdbx_refine_tls.S[1][2] 0.1281 _pdbx_refine_tls.S[1][3] 0.0575 _pdbx_refine_tls.S[2][3] -0.1083 _pdbx_refine_tls.S[2][1] -0.0643 _pdbx_refine_tls.S[3][1] -0.1000 _pdbx_refine_tls.S[3][2] 0.1414 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 127 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0069 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3EN8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 210 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 238 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 2 ? NE ? A ARG 3 NE 2 1 Y 1 A ARG 2 ? CZ ? A ARG 3 CZ 3 1 Y 1 A ARG 2 ? NH1 ? A ARG 3 NH1 4 1 Y 1 A ARG 2 ? NH2 ? A ARG 3 NH2 5 1 Y 1 A ARG 87 ? NE ? A ARG 88 NE 6 1 Y 1 A ARG 87 ? CZ ? A ARG 88 CZ 7 1 Y 1 A ARG 87 ? NH1 ? A ARG 88 NH1 8 1 Y 1 A ARG 87 ? NH2 ? A ARG 88 NH2 9 1 Y 1 A ARG 98 ? CD ? A ARG 99 CD 10 1 Y 1 A ARG 98 ? NE ? A ARG 99 NE 11 1 Y 1 A ARG 98 ? CZ ? A ARG 99 CZ 12 1 Y 1 A ARG 98 ? NH1 ? A ARG 99 NH1 13 1 Y 1 A ARG 98 ? NH2 ? A ARG 99 NH2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'ACETATE ION' ACT 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'TETRAETHYLENE GLYCOL' PG4 6 water HOH #