HEADER TRANSFERASE 25-SEP-08 3ENA TITLE CRYSTAL STRUCTURE OF THE MIMIVIRUS NDK +KPN-N62L-R107G TRIPLE MUTANT TITLE 2 COMPLEXED WITH DGDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NDP KINASE, NDK; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 3 ORGANISM_TAXID: 212035; SOURCE 4 GENE: MIMI_R418, NDK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDIGS02 KEYWDS PHOSPHOTRANSFERASE NUCLEOTIDE BINDING, ATP-BINDING, KINASE, KEYWDS 2 MAGNESIUM, METAL-BINDING, NUCLEOTIDE METABOLISM, NUCLEOTIDE-BINDING, KEYWDS 3 PHOSPHOPROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.JEUDY,A.LARTIGUE,J.M.CLAVERIE,C.ABERGEL REVDAT 5 06-SEP-23 3ENA 1 REMARK REVDAT 4 20-OCT-21 3ENA 1 REMARK SEQADV LINK REVDAT 3 24-JUL-19 3ENA 1 REMARK REVDAT 2 03-NOV-09 3ENA 1 SEQADV REVDAT 1 11-AUG-09 3ENA 0 JRNL AUTH S.JEUDY,A.LARTIGUE,J.M.CLAVERIE,C.ABERGEL JRNL TITL DISSECTING THE UNIQUE NUCLEOTIDE SPECIFICITY OF MIMIVIRUS JRNL TITL 2 NUCLEOSIDE DIPHOSPHATE KINASE. JRNL REF J.VIROL. V. 83 7142 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19439473 JRNL DOI 10.1128/JVI.00511-09 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6400 - 3.8560 0.97 2570 142 0.1560 0.1700 REMARK 3 2 3.8560 - 3.0610 0.99 2614 123 0.1590 0.1770 REMARK 3 3 3.0610 - 2.6740 1.00 2608 155 0.1810 0.2260 REMARK 3 4 2.6740 - 2.4290 1.00 2594 144 0.1810 0.2210 REMARK 3 5 2.4290 - 2.2550 1.00 2636 143 0.1690 0.1990 REMARK 3 6 2.2550 - 2.1220 1.00 2604 145 0.1570 0.2270 REMARK 3 7 2.1220 - 2.0160 1.00 2601 139 0.1650 0.1800 REMARK 3 8 2.0160 - 1.9280 1.00 2623 134 0.1700 0.2020 REMARK 3 9 1.9280 - 1.8540 1.00 2597 129 0.1630 0.2410 REMARK 3 10 1.8540 - 1.7900 1.00 2623 129 0.1650 0.2070 REMARK 3 11 1.7900 - 1.7340 1.00 2612 140 0.1610 0.2090 REMARK 3 12 1.7340 - 1.6840 1.00 2632 118 0.1660 0.2450 REMARK 3 13 1.6840 - 1.6400 1.00 2601 143 0.1710 0.1960 REMARK 3 14 1.6400 - 1.6000 1.00 2607 138 0.1780 0.2320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 50.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19800 REMARK 3 B22 (A**2) : -0.19800 REMARK 3 B33 (A**2) : 0.39600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2221 REMARK 3 ANGLE : 1.191 3012 REMARK 3 CHIRALITY : 0.070 329 REMARK 3 PLANARITY : 0.005 382 REMARK 3 DIHEDRAL : 17.731 830 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ENA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 52.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.22900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2B8P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 TO 1.1M SODIUM CITRATE, 0.1M TRIS, REMARK 280 PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.14750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.14750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.14750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 70.35800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 35.17900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 60.93182 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 285 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A -4 REMARK 465 LYS A -3 REMARK 465 LYS A -2 REMARK 465 ALA A -1 REMARK 465 GLY A 0 REMARK 465 THR A 135 REMARK 465 LYS A 136 REMARK 465 MET A 137 REMARK 465 GLU A 138 REMARK 465 THR A 139 REMARK 465 ASP A 140 REMARK 465 ASN A 141 REMARK 465 TYR B -4 REMARK 465 LYS B -3 REMARK 465 LYS B -2 REMARK 465 ALA B -1 REMARK 465 GLY B 0 REMARK 465 GLU B 134 REMARK 465 THR B 135 REMARK 465 LYS B 136 REMARK 465 MET B 137 REMARK 465 GLU B 138 REMARK 465 THR B 139 REMARK 465 ASP B 140 REMARK 465 ASN B 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 22.68 81.65 REMARK 500 LEU A 114 -36.67 70.50 REMARK 500 ASN B 29 21.95 81.22 REMARK 500 LEU B 114 -39.27 74.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DGI A 201 O3B REMARK 620 2 DGI A 201 O1A 87.7 REMARK 620 3 HOH A 237 O 88.5 175.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DGI B 201 O3B REMARK 620 2 DGI B 201 O1A 85.5 REMARK 620 3 HOH B 332 O 92.1 172.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGI B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B8P RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 92-94 ILT WERE REPLACED BY RESIDUES 92-98 TNPLASA. DBREF 3ENA A 2 141 UNP Q5UQL3 NDK_MIMIV 2 137 DBREF 3ENA B 2 141 UNP Q5UQL3 NDK_MIMIV 2 137 SEQADV 3ENA TYR A -4 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA LYS A -3 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA LYS A -2 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA ALA A -1 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA GLY A 0 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA LEU A 1 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA LEU A 62 UNP Q5UQL3 ASN 62 ENGINEERED MUTATION SEQADV 3ENA THR A 92 UNP Q5UQL3 SEE REMARK 999 SEQADV 3ENA ASN A 93 UNP Q5UQL3 SEE REMARK 999 SEQADV 3ENA PRO A 94 UNP Q5UQL3 SEE REMARK 999 SEQADV 3ENA LEU A 95 UNP Q5UQL3 SEE REMARK 999 SEQADV 3ENA ALA A 96 UNP Q5UQL3 ILE 92 SEE REMARK 999 SEQADV 3ENA SER A 97 UNP Q5UQL3 LEU 93 SEE REMARK 999 SEQADV 3ENA ALA A 98 UNP Q5UQL3 THR 94 SEE REMARK 999 SEQADV 3ENA GLY A 111 UNP Q5UQL3 ARG 107 ENGINEERED MUTATION SEQADV 3ENA TYR B -4 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA LYS B -3 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA LYS B -2 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA ALA B -1 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA GLY B 0 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA LEU B 1 UNP Q5UQL3 EXPRESSION TAG SEQADV 3ENA LEU B 62 UNP Q5UQL3 ASN 62 ENGINEERED MUTATION SEQADV 3ENA THR B 92 UNP Q5UQL3 SEE REMARK 999 SEQADV 3ENA ASN B 93 UNP Q5UQL3 SEE REMARK 999 SEQADV 3ENA PRO B 94 UNP Q5UQL3 SEE REMARK 999 SEQADV 3ENA LEU B 95 UNP Q5UQL3 SEE REMARK 999 SEQADV 3ENA ALA B 96 UNP Q5UQL3 ILE 92 SEE REMARK 999 SEQADV 3ENA SER B 97 UNP Q5UQL3 LEU 93 SEE REMARK 999 SEQADV 3ENA ALA B 98 UNP Q5UQL3 THR 94 SEE REMARK 999 SEQADV 3ENA GLY B 111 UNP Q5UQL3 ARG 107 ENGINEERED MUTATION SEQRES 1 A 146 TYR LYS LYS ALA GLY LEU GLN ARG THR LEU VAL LEU ILE SEQRES 2 A 146 LYS PRO ASP ALA PHE GLU ARG SER LEU VAL ALA GLU ILE SEQRES 3 A 146 MET GLY ARG ILE GLU LYS LYS ASN PHE LYS ILE VAL SER SEQRES 4 A 146 MET LYS PHE TRP SER LYS ALA PRO ARG ASN LEU ILE GLU SEQRES 5 A 146 GLN HIS TYR LYS GLU HIS SER GLU GLN SER TYR PHE ASN SEQRES 6 A 146 ASP LEU CYS ASP PHE MET VAL SER GLY PRO ILE ILE SER SEQRES 7 A 146 ILE VAL TYR GLU GLY THR ASP ALA ILE SER LYS ILE ARG SEQRES 8 A 146 ARG LEU GLN GLY ASN THR ASN PRO LEU ALA SER ALA PRO SEQRES 9 A 146 GLY THR ILE ARG GLY ASP LEU ALA ASN ASP ILE GLY GLU SEQRES 10 A 146 ASN LEU ILE HIS ALA SER ASP SER GLU ASP SER ALA VAL SEQRES 11 A 146 ASP GLU ILE SER ILE TRP PHE PRO GLU THR LYS MET GLU SEQRES 12 A 146 THR ASP ASN SEQRES 1 B 146 TYR LYS LYS ALA GLY LEU GLN ARG THR LEU VAL LEU ILE SEQRES 2 B 146 LYS PRO ASP ALA PHE GLU ARG SER LEU VAL ALA GLU ILE SEQRES 3 B 146 MET GLY ARG ILE GLU LYS LYS ASN PHE LYS ILE VAL SER SEQRES 4 B 146 MET LYS PHE TRP SER LYS ALA PRO ARG ASN LEU ILE GLU SEQRES 5 B 146 GLN HIS TYR LYS GLU HIS SER GLU GLN SER TYR PHE ASN SEQRES 6 B 146 ASP LEU CYS ASP PHE MET VAL SER GLY PRO ILE ILE SER SEQRES 7 B 146 ILE VAL TYR GLU GLY THR ASP ALA ILE SER LYS ILE ARG SEQRES 8 B 146 ARG LEU GLN GLY ASN THR ASN PRO LEU ALA SER ALA PRO SEQRES 9 B 146 GLY THR ILE ARG GLY ASP LEU ALA ASN ASP ILE GLY GLU SEQRES 10 B 146 ASN LEU ILE HIS ALA SER ASP SER GLU ASP SER ALA VAL SEQRES 11 B 146 ASP GLU ILE SER ILE TRP PHE PRO GLU THR LYS MET GLU SEQRES 12 B 146 THR ASP ASN HET DGI A 201 27 HET MG A 202 1 HET DGI B 201 27 HET MG B 202 1 HETNAM DGI 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 DGI 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *248(H2 O) HELIX 1 1 LYS A 9 ARG A 15 1 7 HELIX 2 2 LEU A 17 LYS A 28 1 12 HELIX 3 3 PRO A 42 TYR A 50 1 9 HELIX 4 4 LYS A 51 SER A 54 5 4 HELIX 5 5 TYR A 58 VAL A 67 1 10 HELIX 6 6 ASP A 80 GLY A 90 1 11 HELIX 7 7 THR A 101 ALA A 107 1 7 HELIX 8 8 SER A 120 PHE A 132 1 13 HELIX 9 9 LYS B 9 ARG B 15 1 7 HELIX 10 10 LEU B 17 LYS B 28 1 12 HELIX 11 11 PRO B 42 TYR B 50 1 9 HELIX 12 12 LYS B 51 SER B 54 5 4 HELIX 13 13 TYR B 58 VAL B 67 1 10 HELIX 14 14 ASP B 80 GLY B 90 1 11 HELIX 15 15 THR B 101 ALA B 107 1 7 HELIX 16 16 SER B 120 PHE B 132 1 13 SHEET 1 A 4 LYS A 31 TRP A 38 0 SHEET 2 A 4 ILE A 71 GLY A 78 -1 O ILE A 71 N TRP A 38 SHEET 3 A 4 GLN A 2 ILE A 8 -1 N VAL A 6 O ILE A 74 SHEET 4 A 4 ILE A 115 ALA A 117 -1 O HIS A 116 N LEU A 7 SHEET 1 B 4 LYS B 31 TRP B 38 0 SHEET 2 B 4 ILE B 71 GLY B 78 -1 O ILE B 71 N TRP B 38 SHEET 3 B 4 GLN B 2 ILE B 8 -1 N VAL B 6 O ILE B 74 SHEET 4 B 4 ILE B 115 ALA B 117 -1 O HIS B 116 N LEU B 7 LINK O3B DGI A 201 MG MG A 202 1555 1555 2.26 LINK O1A DGI A 201 MG MG A 202 1555 1555 2.27 LINK MG MG A 202 O HOH A 237 1555 1555 2.40 LINK O3B DGI B 201 MG MG B 202 1555 1555 2.26 LINK O1A DGI B 201 MG MG B 202 1555 1555 2.27 LINK MG MG B 202 O HOH B 332 1555 1555 2.35 SITE 1 AC1 20 LYS A 9 TYR A 50 HIS A 53 TYR A 58 SITE 2 AC1 20 LEU A 62 ARG A 86 THR A 92 ARG A 103 SITE 3 AC1 20 ILE A 110 ASN A 113 MG A 202 HOH A 213 SITE 4 AC1 20 HOH A 233 HOH A 236 HOH A 248 HOH A 266 SITE 5 AC1 20 HOH A 279 HOH A 304 HOH A 305 HOH A 315 SITE 1 AC2 3 DGI A 201 HOH A 237 HOH A 240 SITE 1 AC3 19 LYS B 9 TYR B 50 HIS B 53 TYR B 58 SITE 2 AC3 19 LEU B 62 ARG B 86 THR B 92 ARG B 103 SITE 3 AC3 19 ILE B 110 ASN B 113 MG B 202 HOH B 311 SITE 4 AC3 19 HOH B 317 HOH B 376 HOH B 382 HOH B 385 SITE 5 AC3 19 HOH B 388 HOH B 402 HOH B 407 SITE 1 AC4 3 DGI B 201 HOH B 332 HOH B 407 CRYST1 70.358 70.358 104.295 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014213 0.008206 0.000000 0.00000 SCALE2 0.000000 0.016412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009588 0.00000