HEADER HYDROLASE, BLOOD CLOTTING 25-SEP-08 3ENS
TITLE CRYSTAL STRUCTURE OF HUMAN FXA IN COMPLEX WITH METHYL (2Z)-3-[(3-
TITLE 2 CHLORO-1H-INDOL-7-YL)AMINO]-2-CYANO-3-{[(3S)-2-OXO-1-(2-OXO-2-
TITLE 3 PYRROLIDIN-1-YLETHYL)AZEPAN-3-YL]AMINO}ACRYLATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FACTOR X LIGHT CHAIN;
COMPND 3 CHAIN: A, C;
COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 93-178;
COMPND 5 EC: 3.4.21.6;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: ACTIVATED FACTOR XA HEAVY CHAIN;
COMPND 8 CHAIN: B, D;
COMPND 9 FRAGMENT: SEQUENCE DATABASE RESIDUES 235-472;
COMPND 10 EC: 3.4.21.6
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 OTHER_DETAILS: BLOOD;
SOURCE 6 MOL_ID: 2;
SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 8 ORGANISM_COMMON: HUMAN;
SOURCE 9 ORGANISM_TAXID: 9606;
SOURCE 10 OTHER_DETAILS: BLOOD
KEYWDS SERINE PROTEASE, HYDROLASE, EPIDERMAL GROWTH FACTOR LIKE DOMAIN,
KEYWDS 2 BLOOD COAGULATION FACTOR, CLEAVAGE ON PAIR OF BASIC RESIDUES, EGF-
KEYWDS 3 LIKE DOMAIN, GAMMA-CARBOXYGLUTAMIC ACID, GLYCOPROTEIN,
KEYWDS 4 HYDROXYLATION, ZYMOGEN, BLOOD CLOTTING
EXPDTA X-RAY DIFFRACTION
AUTHOR H.E.KLEI
REVDAT 4 20-NOV-24 3ENS 1 REMARK HETSYN
REVDAT 3 25-OCT-17 3ENS 1 REMARK
REVDAT 2 13-JUL-11 3ENS 1 VERSN
REVDAT 1 30-DEC-08 3ENS 0
JRNL AUTH Y.SHI,D.SITKOFF,J.ZHANG,H.E.KLEI,K.KISH,E.C.LIU,K.S.HARTL,
JRNL AUTH 2 S.M.SEILER,M.CHANG,C.HUANG,S.YOUSSEF,T.E.STEINBACHER,
JRNL AUTH 3 W.A.SCHUMACHER,N.GRAZIER,A.PUDZIANOWSKI,A.APEDO,L.DISCENZA,
JRNL AUTH 4 J.YANCHUNAS,P.D.STEIN,K.S.ATWAL
JRNL TITL DESIGN, STRUCTURE-ACTIVITY RELATIONSHIPS, X-RAY CRYSTAL
JRNL TITL 2 STRUCTURE, AND ENERGETIC CONTRIBUTIONS OF A CRITICAL P1
JRNL TITL 3 PHARMACOPHORE: 3-CHLOROINDOLE-7-YL-BASED FACTOR XA
JRNL TITL 4 INHIBITORS.
JRNL REF J.MED.CHEM. V. 51 7541 2008
JRNL REFN ISSN 0022-2623
JRNL PMID 18998662
JRNL DOI 10.1021/JM800855X
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.03
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3
REMARK 3 NUMBER OF REFLECTIONS : 30221
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.225
REMARK 3 R VALUE (WORKING SET) : 0.223
REMARK 3 FREE R VALUE : 0.286
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.310
REMARK 3 FREE R VALUE TEST SET COUNT : 1000
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 19.0292 - 4.3843 0.99 4331 148 0.2072 0.2468
REMARK 3 2 4.3843 - 3.4869 0.99 4237 146 0.1892 0.2488
REMARK 3 3 3.4869 - 3.0482 0.98 4217 144 0.2159 0.2739
REMARK 3 4 3.0482 - 2.7704 0.97 4170 142 0.2426 0.3393
REMARK 3 5 2.7704 - 2.5724 0.97 4128 142 0.2420 0.3087
REMARK 3 6 2.5724 - 2.4210 0.96 4101 140 0.2533 0.3254
REMARK 3 7 2.4210 - 2.3000 0.95 4037 138 0.2550 0.3573
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : 0.40
REMARK 3 B_SOL : 46.43
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.560
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.92
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.95910
REMARK 3 B22 (A**2) : -5.07220
REMARK 3 B33 (A**2) : -0.88690
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.72480
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.005 5237
REMARK 3 ANGLE : 0.946 7018
REMARK 3 CHIRALITY : 0.064 740
REMARK 3 PLANARITY : 0.004 907
REMARK 3 DIHEDRAL : 18.112 1938
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3ENS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-08.
REMARK 100 THE DEPOSITION ID IS D_1000049551.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-DEC-99
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.50
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : OSMIC
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30240
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.10000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5
REMARK 200 DATA REDUNDANCY IN SHELL : 2.40
REMARK 200 R MERGE FOR SHELL (I) : 0.35100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.66
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 15-22% W/V PEG MME 5000, 0.01 M
REMARK 280 CALCIUM ACETATE, 0.35 M SODIUM ACETATE, 0.1 M LITHIUM SULFATE,
REMARK 280 0.1 M MES, PH 6.500000, VAPOR DIFFUSION HANGING DROP,
REMARK 280 TEMPERATURE 298K, VAPOR DIFFUSION, HANGING DROP
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.43050
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16470 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16050 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LYS A 85
REMARK 465 ASP A 86
REMARK 465 GLY A 87
REMARK 465 ASP A 88
REMARK 465 GLN A 89
REMARK 465 GLU A 91
REMARK 465 THR A 92
REMARK 465 GLY A 104
REMARK 465 LEU A 105
REMARK 465 GLY A 106
REMARK 465 LYS C 85
REMARK 465 ASP C 86
REMARK 465 GLY C 87
REMARK 465 ASP C 88
REMARK 465 THR C 92
REMARK 465 SER C 93
REMARK 465 GLY C 104
REMARK 465 LEU C 105
REMARK 465 GLY C 106
REMARK 465 GLU C 107
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 CYS A 90 O
REMARK 470 LYS A 100 CG CD CE NZ
REMARK 470 LYS A 102 CD CE NZ
REMARK 470 GLN B 75 CG CD OE1 NE2
REMARK 470 GLN C 89 N CB CG CD OE1 NE2
REMARK 470 GLU C 91 CA C O CB CG CD OE1
REMARK 470 GLU C 91 OE2
REMARK 470 LYS C 100 CG CD CE NZ
REMARK 470 LYS C 102 CG CD CE NZ
REMARK 470 GLN C 144 CG CD OE1 NE2
REMARK 470 LYS D 62 CE NZ
REMARK 470 GLU D 74 CD OE1 OE2
REMARK 470 GLN D 75 CG CD OE1 NE2
REMARK 470 LYS D 148 CG CD CE NZ
REMARK 470 ARG D 150 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 126 103.80 -58.58
REMARK 500 GLN A 138 -109.90 -127.46
REMARK 500 ASN A 145 18.74 51.57
REMARK 500 LYS A 162 -51.04 -126.06
REMARK 500 PHE B 41 -20.43 -140.51
REMARK 500 SER B 48 -167.89 -165.32
REMARK 500 GLU B 76 72.11 -65.41
REMARK 500 ARG B 245 -157.06 55.65
REMARK 500 CYS C 90 41.73 -84.92
REMARK 500 GLN C 138 -110.45 -126.48
REMARK 500 SER D 214 -57.92 -123.01
REMARK 500 ARG D 245 -153.12 51.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENS B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENS D 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES D 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 307
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 308
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THE PROTEIN, AS ISOLATED FROM HUMAN BLOOD BY ENZYME RESEARCH
REMARK 999 LABORATORIES (SOUTH BEND, IN), WAS FOUND TO BE HETEROGENEOUS BY
REMARK 999 MASS SPECTROMETRY. THE REPROTED SEQRES RECORDS INCLUDE THE
REMARK 999 RESIDUES CONSISTENT WITH THE CARBOXYPEPTIDASE B CLEAVAGE SITE TO
REMARK 999 FORM DES-GLA PROTEIN AND THE RESIDUES MODELED IN ELECTRON
REMARK 999 DENSITY. N-TERMINI OF LIGHT CHAINS (CHAINS A AND C) MODELED
REMARK 999 BASED ON 1XKA. THERE MAY BE MORE RESIDUES BEYOND THESE TERMINI.
DBREF 3ENS A 85 178 UNP P00742 FA10_HUMAN 85 178
DBREF 3ENS B 16 248 UNP P00742 FA10_HUMAN 235 472
DBREF 3ENS C 85 178 UNP P00742 FA10_HUMAN 85 178
DBREF 3ENS D 16 248 UNP P00742 FA10_HUMAN 235 472
SEQRES 1 A 94 LYS ASP GLY ASP GLN CYS GLU THR SER PRO CYS GLN ASN
SEQRES 2 A 94 GLN GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS
SEQRES 3 A 94 THR CYS LEU GLU GLY PHE GLU GLY LYS ASN CYS GLU LEU
SEQRES 4 A 94 PHE THR ARG LYS LEU CYS SER LEU ASP ASN GLY ASP CYS
SEQRES 5 A 94 ASP GLN PHE CYS HIS GLU GLU GLN ASN SER VAL VAL CYS
SEQRES 6 A 94 SER CYS ALA ARG GLY TYR THR LEU ALA ASP ASN GLY LYS
SEQRES 7 A 94 ALA CYS ILE PRO THR GLY PRO TYR PRO CYS GLY LYS GLN
SEQRES 8 A 94 THR LEU GLU
SEQRES 1 B 238 ILE VAL GLY GLY GLN GLU CYS LYS ASP GLY GLU CYS PRO
SEQRES 2 B 238 TRP GLN ALA LEU LEU ILE ASN GLU GLU ASN GLU GLY PHE
SEQRES 3 B 238 CYS GLY GLY THR ILE LEU SER GLU PHE TYR ILE LEU THR
SEQRES 4 B 238 ALA ALA HIS CYS LEU TYR GLN ALA LYS ARG PHE LYS VAL
SEQRES 5 B 238 ARG VAL GLY ASP ARG ASN THR GLU GLN GLU GLU GLY GLY
SEQRES 6 B 238 GLU ALA VAL HIS GLU VAL GLU VAL VAL ILE LYS HIS ASN
SEQRES 7 B 238 ARG PHE THR LYS GLU THR TYR ASP PHE ASP ILE ALA VAL
SEQRES 8 B 238 LEU ARG LEU LYS THR PRO ILE THR PHE ARG MET ASN VAL
SEQRES 9 B 238 ALA PRO ALA CYS LEU PRO GLU ARG ASP TRP ALA GLU SER
SEQRES 10 B 238 THR LEU MET THR GLN LYS THR GLY ILE VAL SER GLY PHE
SEQRES 11 B 238 GLY ARG THR HIS GLU LYS GLY ARG GLN SER THR ARG LEU
SEQRES 12 B 238 LYS MET LEU GLU VAL PRO TYR VAL ASP ARG ASN SER CYS
SEQRES 13 B 238 LYS LEU SER SER SER PHE ILE ILE THR GLN ASN MET PHE
SEQRES 14 B 238 CYS ALA GLY TYR ASP THR LYS GLN GLU ASP ALA CYS GLN
SEQRES 15 B 238 GLY ASP SER GLY GLY PRO HIS VAL THR ARG PHE LYS ASP
SEQRES 16 B 238 THR TYR PHE VAL THR GLY ILE VAL SER TRP GLY GLU GLY
SEQRES 17 B 238 CYS ALA ARG LYS GLY LYS TYR GLY ILE TYR THR LYS VAL
SEQRES 18 B 238 THR ALA PHE LEU LYS TRP ILE ASP ARG SER MET LYS THR
SEQRES 19 B 238 ARG GLY LEU PRO
SEQRES 1 C 94 LYS ASP GLY ASP GLN CYS GLU THR SER PRO CYS GLN ASN
SEQRES 2 C 94 GLN GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS
SEQRES 3 C 94 THR CYS LEU GLU GLY PHE GLU GLY LYS ASN CYS GLU LEU
SEQRES 4 C 94 PHE THR ARG LYS LEU CYS SER LEU ASP ASN GLY ASP CYS
SEQRES 5 C 94 ASP GLN PHE CYS HIS GLU GLU GLN ASN SER VAL VAL CYS
SEQRES 6 C 94 SER CYS ALA ARG GLY TYR THR LEU ALA ASP ASN GLY LYS
SEQRES 7 C 94 ALA CYS ILE PRO THR GLY PRO TYR PRO CYS GLY LYS GLN
SEQRES 8 C 94 THR LEU GLU
SEQRES 1 D 238 ILE VAL GLY GLY GLN GLU CYS LYS ASP GLY GLU CYS PRO
SEQRES 2 D 238 TRP GLN ALA LEU LEU ILE ASN GLU GLU ASN GLU GLY PHE
SEQRES 3 D 238 CYS GLY GLY THR ILE LEU SER GLU PHE TYR ILE LEU THR
SEQRES 4 D 238 ALA ALA HIS CYS LEU TYR GLN ALA LYS ARG PHE LYS VAL
SEQRES 5 D 238 ARG VAL GLY ASP ARG ASN THR GLU GLN GLU GLU GLY GLY
SEQRES 6 D 238 GLU ALA VAL HIS GLU VAL GLU VAL VAL ILE LYS HIS ASN
SEQRES 7 D 238 ARG PHE THR LYS GLU THR TYR ASP PHE ASP ILE ALA VAL
SEQRES 8 D 238 LEU ARG LEU LYS THR PRO ILE THR PHE ARG MET ASN VAL
SEQRES 9 D 238 ALA PRO ALA CYS LEU PRO GLU ARG ASP TRP ALA GLU SER
SEQRES 10 D 238 THR LEU MET THR GLN LYS THR GLY ILE VAL SER GLY PHE
SEQRES 11 D 238 GLY ARG THR HIS GLU LYS GLY ARG GLN SER THR ARG LEU
SEQRES 12 D 238 LYS MET LEU GLU VAL PRO TYR VAL ASP ARG ASN SER CYS
SEQRES 13 D 238 LYS LEU SER SER SER PHE ILE ILE THR GLN ASN MET PHE
SEQRES 14 D 238 CYS ALA GLY TYR ASP THR LYS GLN GLU ASP ALA CYS GLN
SEQRES 15 D 238 GLY ASP SER GLY GLY PRO HIS VAL THR ARG PHE LYS ASP
SEQRES 16 D 238 THR TYR PHE VAL THR GLY ILE VAL SER TRP GLY GLU GLY
SEQRES 17 D 238 CYS ALA ARG LYS GLY LYS TYR GLY ILE TYR THR LYS VAL
SEQRES 18 D 238 THR ALA PHE LEU LYS TRP ILE ASP ARG SER MET LYS THR
SEQRES 19 D 238 ARG GLY LEU PRO
HET GOL A 201 6
HET GOL A 202 6
HET GOL A 203 6
HET ENS B 301 36
HET CA B 302 1
HET NA B 303 1
HET MES B 304 12
HET GOL B 305 6
HET ACT B 306 4
HET ENS D 301 36
HET CA D 302 1
HET NA D 303 1
HET MES D 304 12
HET GOL D 305 6
HET GOL D 306 6
HET GOL D 307 6
HET ACT D 308 4
HETNAM GOL GLYCEROL
HETNAM ENS METHYL (2Z)-3-[(3-CHLORO-1H-INDOL-7-YL)AMINO]-2-CYANO-
HETNAM 2 ENS 3-{[(3S)-2-OXO-1-(2-OXO-2-PYRROLIDIN-1-YLETHYL)AZEPAN-
HETNAM 3 ENS 3-YL]AMINO}ACRYLATE
HETNAM CA CALCIUM ION
HETNAM NA SODIUM ION
HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
HETNAM ACT ACETATE ION
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
HETSYN ENS METHYL (2Z)-3-[(3-CHLORO-1H-INDOL-7-YL)AMINO]-2-CYANO-
HETSYN 2 ENS 3-{[(3S)-2-OXO-1-(2-OXO-2-PYRROLIDIN-1-YLETHYL)AZEPAN-
HETSYN 3 ENS 3-YL]AMINO}PROP-2-E NOATE
FORMUL 5 GOL 7(C3 H8 O3)
FORMUL 8 ENS 2(C25 H29 CL N6 O4)
FORMUL 9 CA 2(CA 2+)
FORMUL 10 NA 2(NA 1+)
FORMUL 11 MES 2(C6 H13 N O4 S)
FORMUL 13 ACT 2(C2 H3 O2 1-)
FORMUL 22 HOH *304(H2 O)
HELIX 1 1 LEU A 131 CYS A 136 5 6
HELIX 2 2 ALA B 55 ALA B 61A 5 8
HELIX 3 3 GLU B 124A LEU B 131A 1 9
HELIX 4 4 ASP B 164 SER B 172 1 9
HELIX 5 5 PHE B 234 THR B 244 1 11
HELIX 6 6 CYS C 95 GLY C 99 5 5
HELIX 7 7 LEU C 131 CYS C 136 5 6
HELIX 8 8 ALA D 55 GLN D 61 5 7
HELIX 9 9 GLU D 124A LEU D 131A 1 9
HELIX 10 10 ASP D 164 SER D 172 1 9
HELIX 11 11 PHE D 234 THR D 244 1 11
SHEET 1 A 2 LYS A 100 CYS A 101 0
SHEET 2 A 2 CYS A 110 THR A 111 -1 O THR A 111 N LYS A 100
SHEET 1 B 2 PHE A 116 GLU A 117 0
SHEET 2 B 2 LEU A 123 PHE A 124 -1 O LEU A 123 N GLU A 117
SHEET 1 C 2 PHE A 139 GLU A 142 0
SHEET 2 C 2 VAL A 147 SER A 150 -1 O VAL A 148 N HIS A 141
SHEET 1 D 2 TYR A 155 LEU A 157 0
SHEET 2 D 2 CYS A 164 PRO A 166 -1 O ILE A 165 N THR A 156
SHEET 1 E 8 GLN B 20 GLU B 21 0
SHEET 2 E 8 LYS B 156 VAL B 163 -1 O MET B 157 N GLN B 20
SHEET 3 E 8 MET B 180 ALA B 183 -1 O CYS B 182 N VAL B 163
SHEET 4 E 8 GLY B 226 LYS B 230 -1 O TYR B 228 N PHE B 181
SHEET 5 E 8 THR B 206 GLY B 216 -1 N TRP B 215 O ILE B 227
SHEET 6 E 8 PRO B 198 PHE B 203 -1 N HIS B 199 O THR B 210
SHEET 7 E 8 THR B 135 GLY B 140 -1 N ILE B 137 O VAL B 200
SHEET 8 E 8 LYS B 156 VAL B 163 -1 O VAL B 160 N GLY B 136
SHEET 1 F 7 ALA B 81 HIS B 83 0
SHEET 2 F 7 LYS B 65 VAL B 68 -1 N VAL B 66 O HIS B 83
SHEET 3 F 7 GLN B 30 ILE B 34 -1 N LEU B 32 O ARG B 67
SHEET 4 F 7 GLY B 40 ILE B 46 -1 O CYS B 42 N LEU B 33
SHEET 5 F 7 TYR B 51 THR B 54 -1 O LEU B 53 N THR B 45
SHEET 6 F 7 ALA B 104 LEU B 108 -1 O LEU B 106 N ILE B 52
SHEET 7 F 7 VAL B 85 LYS B 90 -1 N GLU B 86 O ARG B 107
SHEET 1 G 2 LYS C 100 CYS C 101 0
SHEET 2 G 2 CYS C 110 THR C 111 -1 O THR C 111 N LYS C 100
SHEET 1 H 2 PHE C 116 GLU C 117 0
SHEET 2 H 2 LEU C 123 PHE C 124 -1 O LEU C 123 N GLU C 117
SHEET 1 I 2 PHE C 139 GLU C 142 0
SHEET 2 I 2 VAL C 147 SER C 150 -1 O VAL C 148 N HIS C 141
SHEET 1 J 2 TYR C 155 LEU C 157 0
SHEET 2 J 2 CYS C 164 PRO C 166 -1 O ILE C 165 N THR C 156
SHEET 1 K 8 GLN D 20 GLU D 21 0
SHEET 2 K 8 LYS D 156 VAL D 163 -1 O MET D 157 N GLN D 20
SHEET 3 K 8 MET D 180 ALA D 183 -1 O CYS D 182 N VAL D 163
SHEET 4 K 8 GLY D 226 LYS D 230 -1 O TYR D 228 N PHE D 181
SHEET 5 K 8 THR D 206 TRP D 215 -1 N TRP D 215 O ILE D 227
SHEET 6 K 8 PRO D 198 PHE D 203 -1 N HIS D 199 O THR D 210
SHEET 7 K 8 THR D 135 GLY D 140 -1 N ILE D 137 O VAL D 200
SHEET 8 K 8 LYS D 156 VAL D 163 -1 O VAL D 160 N GLY D 136
SHEET 1 L 7 ALA D 81 HIS D 83 0
SHEET 2 L 7 LYS D 65 VAL D 68 -1 N VAL D 66 O HIS D 83
SHEET 3 L 7 GLN D 30 ILE D 34 -1 N LEU D 32 O ARG D 67
SHEET 4 L 7 GLY D 40 ILE D 46 -1 O CYS D 42 N LEU D 33
SHEET 5 L 7 TYR D 51 THR D 54 -1 O LEU D 53 N THR D 45
SHEET 6 L 7 ALA D 104 LEU D 108 -1 O LEU D 106 N ILE D 52
SHEET 7 L 7 VAL D 85 LYS D 90 -1 N GLU D 86 O ARG D 107
SSBOND 1 CYS A 90 CYS A 101 1555 1555 2.04
SSBOND 2 CYS A 95 CYS A 110 1555 1555 2.03
SSBOND 3 CYS A 112 CYS A 121 1555 1555 2.04
SSBOND 4 CYS A 129 CYS A 140 1555 1555 2.04
SSBOND 5 CYS A 136 CYS A 149 1555 1555 2.04
SSBOND 6 CYS A 151 CYS A 164 1555 1555 2.04
SSBOND 7 CYS A 172 CYS B 122 1555 1555 2.04
SSBOND 8 CYS B 22 CYS B 27 1555 1555 2.05
SSBOND 9 CYS B 42 CYS B 58 1555 1555 2.04
SSBOND 10 CYS B 168 CYS B 182 1555 1555 2.03
SSBOND 11 CYS B 191 CYS B 220 1555 1555 2.03
SSBOND 12 CYS C 90 CYS C 101 1555 1555 2.04
SSBOND 13 CYS C 95 CYS C 110 1555 1555 2.03
SSBOND 14 CYS C 112 CYS C 121 1555 1555 2.05
SSBOND 15 CYS C 129 CYS C 140 1555 1555 2.04
SSBOND 16 CYS C 136 CYS C 149 1555 1555 2.04
SSBOND 17 CYS C 151 CYS C 164 1555 1555 2.04
SSBOND 18 CYS C 172 CYS D 122 1555 1555 2.05
SSBOND 19 CYS D 22 CYS D 27 1555 1555 2.04
SSBOND 20 CYS D 42 CYS D 58 1555 1555 2.06
SSBOND 21 CYS D 168 CYS D 182 1555 1555 2.04
SSBOND 22 CYS D 191 CYS D 220 1555 1555 2.03
SITE 1 AC1 15 GLU B 97 THR B 98 TYR B 99 GLU B 147
SITE 2 AC1 15 ASP B 189 ALA B 190 CYS B 191 GLN B 192
SITE 3 AC1 15 VAL B 213 TRP B 215 GLY B 216 GLY B 218
SITE 4 AC1 15 CYS B 220 GLY B 226 ILE B 227
SITE 1 AC2 17 ASN A 120 GLU D 97 TYR D 99 GLU D 147
SITE 2 AC2 17 ASP D 189 ALA D 190 CYS D 191 GLN D 192
SITE 3 AC2 17 VAL D 213 TRP D 215 GLY D 216 GLY D 218
SITE 4 AC2 17 CYS D 220 GLY D 226 ILE D 227 HOH D 333
SITE 5 AC2 17 HOH D 374
SITE 1 AC3 5 ASP B 70 ASN B 72 THR B 73 GLN B 75
SITE 2 AC3 5 GLU B 80
SITE 1 AC4 4 ASP D 70 ASN D 72 GLN D 75 GLU D 80
SITE 1 AC5 6 TYR B 185 ASP B 185A LYS B 186 ALA B 221
SITE 2 AC5 6 ARG B 222 LYS B 224
SITE 1 AC6 5 TYR D 185 ASP D 185A LYS D 186 ALA D 221
SITE 2 AC6 5 ARG D 222
SITE 1 AC7 6 ARG B 125 ASN B 179 ALA B 233 LYS B 236
SITE 2 AC7 6 HOH B 366 HOH B 412
SITE 1 AC8 8 PHE D 101 ARG D 125 ASN D 179 ALA D 233
SITE 2 AC8 8 LYS D 236 HOH D 349 HOH D 389 HOH D 418
SITE 1 AC9 5 PRO A 166 GLY A 168 GOL A 203 HOH A 215
SITE 2 AC9 5 HOH A 222
SITE 1 BC1 2 LEU A 157 HOH A 213
SITE 1 BC2 4 PRO A 171 LYS A 174 LEU A 177 GOL A 201
SITE 1 BC3 5 PRO B 124 LEU B 235 ASP B 239 HOH B 337
SITE 2 BC3 5 HOH B 398
SITE 1 BC4 4 LEU D 123 PRO D 124 ASP D 239 HOH D 412
SITE 1 BC5 4 ARG D 93 THR D 95 ASP D 100 HOH D 367
SITE 1 BC6 6 SER A 130 THR B 132 VAL D 87 VAL D 88
SITE 2 BC6 6 ILE D 89 HOH D 378
SITE 1 BC7 3 ASP B 185A THR B 185B LYS B 186
SITE 1 BC8 4 TYR D 185 ASP D 185A THR D 185B LYS D 186
CRYST1 62.311 78.861 73.850 90.00 102.82 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016049 0.000000 0.003652 0.00000
SCALE2 0.000000 0.012681 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013887 0.00000