HEADER ISOMERASE 26-SEP-08 3ENV TITLE SUBSTRATE AND INHIBITOR COMPLEXES OF RIBOSE 5-PHOSPHATE ISOMERASE FROM TITLE 2 VIBRIO VULNIFICUS YJ016 CAVEAT 3ENV ABF A 1269 HAS WRONG CHIRALITY AT ATOM C1 ABF A 1269 HAS CAVEAT 2 3ENV WRONG CHIRALITY AT ATOM C2 ABF A 1269 HAS WRONG CHIRALITY CAVEAT 3 3ENV AT ATOM C3 ABF A 1269 HAS WRONG CHIRALITY AT ATOM C4 ABF B CAVEAT 4 3ENV 1269 HAS WRONG CHIRALITY AT ATOM C1 ABF B 1269 HAS WRONG CAVEAT 5 3ENV CHIRALITY AT ATOM C2 ABF B 1269 HAS WRONG CHIRALITY AT ATOM CAVEAT 6 3ENV C3 ABF B 1269 HAS WRONG CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHORIBOISOMERASE A, PRI; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 STRAIN: YJ016; SOURCE 5 GENE: RPIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28ATEV KEYWDS RIBOSE 5-PHOSPHATE, ARABINOSE 5-PHOSPHATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MIN,T.H.KWON,T.G.KIM REVDAT 4 01-NOV-23 3ENV 1 HETSYN REVDAT 3 29-JUL-20 3ENV 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM SITE ATOM REVDAT 2 09-MAR-11 3ENV 1 REMARK REVDAT 1 29-SEP-09 3ENV 0 JRNL AUTH T.G.KIM,T.H.KWON,K.MIN,M.S.DONG,Y.I.PARK,C.BAN JRNL TITL CRYSTAL STRUCTURES OF SUBSTRATE AND INHIBITOR COMPLEXES OF JRNL TITL 2 RIBOSE 5-PHOSPHATE ISOMERASE A FROM VIBRIO VULNIFICUS YJ016 JRNL REF MOL.CELLS V. 27 99 2009 JRNL REFN ISSN 1016-8478 JRNL PMID 19214439 JRNL DOI 10.1007/S10059-009-0010-6 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 25929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : 1.28000 REMARK 3 B12 (A**2) : -0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.791 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.670 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3272 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4436 ; 2.194 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 8.019 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;39.149 ;25.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;19.524 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.658 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 528 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2400 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1704 ; 0.260 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2150 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 221 ; 0.262 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.316 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.359 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2225 ; 0.879 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3436 ; 1.304 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1213 ; 2.130 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 2.841 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ENV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3ENQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG4000, 0.05M SUCCINATE, PH4.0, REMARK 280 0.18M AMMONIUM SULFATE, 10MM ARABINOSE 5-PHOSPHATE, PH7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.51100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.23434 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.43133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 38.51100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.23434 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.43133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 38.51100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.23434 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.43133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.46867 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 126.86267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.46867 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 126.86267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.46867 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 126.86267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 21 O GLU A 45 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 140 O HOH A 1276 2455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 142 CE2 TYR B 142 CD2 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 90 15.50 84.09 REMARK 500 ASN A 187 9.40 -64.62 REMARK 500 GLU A 217 87.42 -153.92 REMARK 500 GLU B 45 36.58 -98.30 REMARK 500 ASN B 178 72.36 -118.35 REMARK 500 PHE B 198 60.66 -113.52 REMARK 500 PRO B 211 -19.61 -39.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ENW RELATED DB: PDB DBREF 3ENV A 1 218 UNP Q7MHL9 RPIA_VIBVY 1 218 DBREF 3ENV B 1 218 UNP Q7MHL9 RPIA_VIBVY 1 218 SEQADV 3ENV GLY A -16 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV SER A -15 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV HIS A -14 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV MET A -13 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV ALA A -12 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV SER A -11 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV MET A -10 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV THR A -9 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY A -8 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY A -7 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLN A -6 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLN A -5 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV MET A -4 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY A -3 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV ARG A -2 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY A -1 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV SER A 0 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY B -16 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV SER B -15 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV HIS B -14 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV MET B -13 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV ALA B -12 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV SER B -11 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV MET B -10 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV THR B -9 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY B -8 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY B -7 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLN B -6 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLN B -5 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV MET B -4 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY B -3 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV ARG B -2 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV GLY B -1 UNP Q7MHL9 EXPRESSION TAG SEQADV 3ENV SER B 0 UNP Q7MHL9 EXPRESSION TAG SEQRES 1 A 235 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 235 GLY ARG GLY SER MET THR GLN ASP GLU MET LYS LYS ALA SEQRES 3 A 235 ALA GLY TRP ALA ALA LEU LYS TYR VAL GLU LYS GLY SER SEQRES 4 A 235 ILE VAL GLY VAL GLY THR GLY SER THR VAL ASN HIS PHE SEQRES 5 A 235 ILE ASP ALA LEU GLY THR MET SER GLU GLU ILE LYS GLY SEQRES 6 A 235 ALA VAL SER SER SER VAL ALA SER THR GLU LYS LEU GLU SEQRES 7 A 235 ALA LEU GLY ILE LYS ILE PHE ASP CYS ASN GLU VAL ALA SEQRES 8 A 235 SER LEU ASP ILE TYR VAL ASP GLY ALA ASP GLU ILE ASN SEQRES 9 A 235 ALA ASP ARG GLU MET ILE LYS GLY GLY GLY ALA ALA LEU SEQRES 10 A 235 THR ARG GLU LYS ILE VAL ALA ALA ILE ALA ASP LYS PHE SEQRES 11 A 235 ILE CYS ILE VAL ASP GLY THR LYS ALA VAL ASP VAL LEU SEQRES 12 A 235 GLY THR PHE PRO LEU PRO VAL GLU VAL ILE PRO MET ALA SEQRES 13 A 235 ARG SER TYR VAL ALA ARG GLN LEU VAL LYS LEU GLY GLY SEQRES 14 A 235 ASP PRO CYS TYR ARG GLU GLY VAL ILE THR ASP ASN GLY SEQRES 15 A 235 ASN VAL ILE LEU ASP VAL TYR GLY MET LYS ILE THR ASN SEQRES 16 A 235 PRO LYS GLN LEU GLU ASP GLN ILE ASN ALA ILE PRO GLY SEQRES 17 A 235 VAL VAL THR VAL GLY LEU PHE ALA HIS ARG GLY ALA ASP SEQRES 18 A 235 VAL VAL ILE THR GLY THR PRO GLU GLY ALA LYS ILE GLU SEQRES 19 A 235 GLU SEQRES 1 B 235 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 B 235 GLY ARG GLY SER MET THR GLN ASP GLU MET LYS LYS ALA SEQRES 3 B 235 ALA GLY TRP ALA ALA LEU LYS TYR VAL GLU LYS GLY SER SEQRES 4 B 235 ILE VAL GLY VAL GLY THR GLY SER THR VAL ASN HIS PHE SEQRES 5 B 235 ILE ASP ALA LEU GLY THR MET SER GLU GLU ILE LYS GLY SEQRES 6 B 235 ALA VAL SER SER SER VAL ALA SER THR GLU LYS LEU GLU SEQRES 7 B 235 ALA LEU GLY ILE LYS ILE PHE ASP CYS ASN GLU VAL ALA SEQRES 8 B 235 SER LEU ASP ILE TYR VAL ASP GLY ALA ASP GLU ILE ASN SEQRES 9 B 235 ALA ASP ARG GLU MET ILE LYS GLY GLY GLY ALA ALA LEU SEQRES 10 B 235 THR ARG GLU LYS ILE VAL ALA ALA ILE ALA ASP LYS PHE SEQRES 11 B 235 ILE CYS ILE VAL ASP GLY THR LYS ALA VAL ASP VAL LEU SEQRES 12 B 235 GLY THR PHE PRO LEU PRO VAL GLU VAL ILE PRO MET ALA SEQRES 13 B 235 ARG SER TYR VAL ALA ARG GLN LEU VAL LYS LEU GLY GLY SEQRES 14 B 235 ASP PRO CYS TYR ARG GLU GLY VAL ILE THR ASP ASN GLY SEQRES 15 B 235 ASN VAL ILE LEU ASP VAL TYR GLY MET LYS ILE THR ASN SEQRES 16 B 235 PRO LYS GLN LEU GLU ASP GLN ILE ASN ALA ILE PRO GLY SEQRES 17 B 235 VAL VAL THR VAL GLY LEU PHE ALA HIS ARG GLY ALA ASP SEQRES 18 B 235 VAL VAL ILE THR GLY THR PRO GLU GLY ALA LYS ILE GLU SEQRES 19 B 235 GLU HET ABF A1269 14 HET ABF B1269 14 HETNAM ABF 5-O-PHOSPHONO-BETA-D-ARABINOFURANOSE HETSYN ABF BETA-D-ARABINOFURANOSE-5'-PHOSPHATE; 5-O-PHOSPHONO- HETSYN 2 ABF BETA-D-ARABINOSE; 5-O-PHOSPHONO-D-ARABINOSE; 5-O- HETSYN 3 ABF PHOSPHONO-ARABINOSE FORMUL 3 ABF 2(C5 H11 O8 P) FORMUL 5 HOH *128(H2 O) HELIX 1 1 GLN A 3 ALA A 14 1 12 HELIX 2 2 LEU A 15 VAL A 18 5 4 HELIX 3 3 GLY A 29 GLY A 40 1 12 HELIX 4 4 THR A 41 SER A 43 5 3 HELIX 5 5 SER A 53 ALA A 62 1 10 HELIX 6 6 ASP A 69 VAL A 73 5 5 HELIX 7 7 ALA A 99 ILE A 109 1 11 HELIX 8 8 ALA A 139 LEU A 150 1 12 HELIX 9 9 ASN A 178 ASN A 187 1 10 HELIX 10 10 GLN B 3 ALA B 14 1 12 HELIX 11 11 GLY B 29 GLY B 40 1 12 HELIX 12 12 SER B 53 GLU B 61 1 9 HELIX 13 13 ASP B 69 VAL B 73 5 5 HELIX 14 14 ALA B 99 ILE B 109 1 11 HELIX 15 15 ALA B 139 LEU B 150 1 12 HELIX 16 16 ASN B 178 ALA B 188 1 11 SHEET 1 A 5 ILE A 46 SER A 51 0 SHEET 2 A 5 SER A 22 VAL A 26 1 N VAL A 24 O VAL A 50 SHEET 3 A 5 LEU A 76 ASP A 81 1 O ILE A 78 N GLY A 25 SHEET 4 A 5 ALA A 110 ILE A 116 1 O ILE A 114 N TYR A 79 SHEET 5 A 5 VAL A 205 ILE A 207 1 O ILE A 207 N CYS A 115 SHEET 1 B 3 GLU A 85 ILE A 86 0 SHEET 2 B 3 MET A 92 ILE A 93 -1 O ILE A 93 N GLU A 85 SHEET 3 B 3 LEU A 197 PHE A 198 -1 O PHE A 198 N MET A 92 SHEET 1 C 4 ASP A 153 TYR A 156 0 SHEET 2 C 4 VAL A 167 TYR A 172 -1 O TYR A 172 N ASP A 153 SHEET 3 C 4 LEU A 131 VAL A 135 -1 N VAL A 133 O LEU A 169 SHEET 4 C 4 VAL A 192 VAL A 195 -1 O VAL A 193 N GLU A 134 SHEET 1 D 6 GLY B 48 SER B 51 0 SHEET 2 D 6 ILE B 23 VAL B 26 1 N VAL B 24 O VAL B 50 SHEET 3 D 6 LEU B 76 ASP B 81 1 O VAL B 80 N GLY B 25 SHEET 4 D 6 ALA B 110 VAL B 117 1 O LYS B 112 N ASP B 77 SHEET 5 D 6 VAL B 205 THR B 210 1 O ILE B 207 N CYS B 115 SHEET 6 D 6 GLY B 213 GLU B 217 -1 O GLU B 217 N VAL B 206 SHEET 1 E 3 GLU B 85 ILE B 86 0 SHEET 2 E 3 MET B 92 ILE B 93 -1 O ILE B 93 N GLU B 85 SHEET 3 E 3 LEU B 197 PHE B 198 -1 O PHE B 198 N MET B 92 SHEET 1 F 4 ASP B 153 TYR B 156 0 SHEET 2 F 4 VAL B 167 TYR B 172 -1 O TYR B 172 N ASP B 153 SHEET 3 F 4 LEU B 131 VAL B 135 -1 N LEU B 131 O VAL B 171 SHEET 4 F 4 VAL B 192 VAL B 195 -1 O VAL B 193 N GLU B 134 CRYST1 77.022 77.022 190.294 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012983 0.007496 0.000000 0.00000 SCALE2 0.000000 0.014992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005255 0.00000