HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-SEP-08 3EO6 TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION (DUF1255) (AFE_2634) TITLE 2 FROM ACIDITHIOBACILLUS FERROOXIDANS NCIB8455 AT 0.97 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN OF UNKNOWN FUNCTION (DUF1255); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS ATCC 23270; SOURCE 3 ORGANISM_TAXID: 243159; SOURCE 4 GENE: AFE_2634; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS AFE_2634, PROTEIN OF UNKNOWN FUNCTION (DUF1255), STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 24-JUL-19 3EO6 1 REMARK DBREF LINK REVDAT 3 25-OCT-17 3EO6 1 REMARK REVDAT 2 24-FEB-09 3EO6 1 VERSN REVDAT 1 07-OCT-08 3EO6 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION (DUF1255) JRNL TITL 2 (AFE_2634) FROM ACIDITHIOBACILLUS FERROOXIDANS NCIB8455 AT JRNL TITL 3 0.97 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 111533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5605 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 425 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.613 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2313 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1512 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3210 ; 1.920 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3740 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 7.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;35.194 ;24.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 405 ;13.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2872 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 463 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1499 ; 2.255 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 583 ; 1.467 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2480 ; 3.182 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 814 ; 4.327 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 730 ; 5.464 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3825 ; 1.902 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 456 ;10.276 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3747 ; 4.001 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 105 6 REMARK 3 1 B 0 B 105 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1074 ; 0.700 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1074 ; 2.060 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO ~0.8 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. U VALUES WERE REFINED INDIVIDUALLY REMARK 3 4. TRIS (TRS) AND MG MODELED WERE PRESENT IN CRYSTALLIZATION REMARK 3 CONDITIONS. REMARK 3 5. THE DENSITY FOR N-TERMINUS AND C-TERMINUS ARE POOR. REMARK 4 REMARK 4 3EO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000049565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111566 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.970 REMARK 200 RESOLUTION RANGE LOW (A) : 28.194 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 5.9110 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : 0.70300 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M MGCL2, 30.0000% PEG-4000, 0.1M REMARK 280 TRIS PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.01400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 218 O HOH B 280 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 96 -66.32 -91.73 REMARK 500 PRO A 98 128.47 -36.38 REMARK 500 GLU B 52 -92.49 -103.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 116 O REMARK 620 2 HOH A 145 O 89.8 REMARK 620 3 HOH A 138 O 91.5 89.3 REMARK 620 4 HOH A 131 O 88.5 91.4 179.4 REMARK 620 5 HOH A 110 O 89.1 178.8 91.1 88.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 193 O REMARK 620 2 HOH B 118 O 90.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391572 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 (1) THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. (2) THE REMARK 999 SEQUENCE IS NOT AVAILABLE IN THE UNIPROT-KB DATABASE AT THE TIME OF REMARK 999 DEPOSITION. IT IS AVAILABLE AS LOCUS ID AFE_2634 FROM THE REMARK 999 COMPREHENSIVE MICROBIAL RESOURCE AT THE J. CRAIG VENTER INSTITUTE. DBREF 3EO6 A 0 105 PDB 3EO6 3EO6 0 105 DBREF 3EO6 B 0 105 PDB 3EO6 3EO6 0 105 SEQRES 1 A 106 GLY MSE ALA PRO ASP GLN GLN VAL PRO ALA THR ALA LEU SEQRES 2 A 106 GLY LYS SER SER ARG ILE SER LEU ASP GLY ARG ARG SER SEQRES 3 A 106 GLU ARG SER VAL ILE LEU ALA ASP GLY SER MSE HIS SER SEQRES 4 A 106 LEU THR LEU LEU HIS PRO GLY VAL TYR THR LEU SER SER SEQRES 5 A 106 GLU VAL ALA GLU THR ILE ARG VAL LEU SER GLY MSE ALA SEQRES 6 A 106 TYR TYR HIS ALA GLU GLY ALA ASN ASP VAL GLN GLU LEU SEQRES 7 A 106 HIS ALA GLY ASP SER MSE VAL ILE PRO ALA ASN GLN SER SEQRES 8 A 106 TYR ARG LEU GLU VAL MSE GLU PRO LEU ASP TYR LEU LEU SEQRES 9 A 106 SER SER SEQRES 1 B 106 GLY MSE ALA PRO ASP GLN GLN VAL PRO ALA THR ALA LEU SEQRES 2 B 106 GLY LYS SER SER ARG ILE SER LEU ASP GLY ARG ARG SER SEQRES 3 B 106 GLU ARG SER VAL ILE LEU ALA ASP GLY SER MSE HIS SER SEQRES 4 B 106 LEU THR LEU LEU HIS PRO GLY VAL TYR THR LEU SER SER SEQRES 5 B 106 GLU VAL ALA GLU THR ILE ARG VAL LEU SER GLY MSE ALA SEQRES 6 B 106 TYR TYR HIS ALA GLU GLY ALA ASN ASP VAL GLN GLU LEU SEQRES 7 B 106 HIS ALA GLY ASP SER MSE VAL ILE PRO ALA ASN GLN SER SEQRES 8 B 106 TYR ARG LEU GLU VAL MSE GLU PRO LEU ASP TYR LEU LEU SEQRES 9 B 106 SER SER MODRES 3EO6 MSE A 1 MET SELENOMETHIONINE MODRES 3EO6 MSE A 36 MET SELENOMETHIONINE MODRES 3EO6 MSE A 63 MET SELENOMETHIONINE MODRES 3EO6 MSE A 83 MET SELENOMETHIONINE MODRES 3EO6 MSE A 96 MET SELENOMETHIONINE MODRES 3EO6 MSE B 1 MET SELENOMETHIONINE MODRES 3EO6 MSE B 36 MET SELENOMETHIONINE MODRES 3EO6 MSE B 63 MET SELENOMETHIONINE MODRES 3EO6 MSE B 83 MET SELENOMETHIONINE MODRES 3EO6 MSE B 96 MET SELENOMETHIONINE HET MSE A 1 24 HET MSE A 36 32 HET MSE A 63 8 HET MSE A 83 8 HET MSE A 96 24 HET MSE B 1 8 HET MSE B 36 16 HET MSE B 63 8 HET MSE B 83 24 HET MSE B 96 8 HET MG A 106 1 HET MG B 106 1 HET TRS B 107 8 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *422(H2 O) HELIX 1 1 ALA A 2 ASP A 4 5 3 HELIX 2 2 ALA B 2 ASP B 4 5 3 SHEET 1 A 4 GLN B 75 HIS B 78 0 SHEET 2 A 4 GLU B 55 ALA B 68 -1 N ALA B 64 O LEU B 77 SHEET 3 A 4 SER B 90 SER B 104 -1 O ASP B 100 N LEU B 60 SHEET 4 A 4 GLY B 45 SER B 50 -1 N TYR B 47 O LEU B 93 SHEET 1 B 4 SER B 82 ILE B 85 0 SHEET 2 B 4 GLU B 55 ALA B 68 -1 N ILE B 57 O MSE B 83 SHEET 3 B 4 SER B 90 SER B 104 -1 O ASP B 100 N LEU B 60 SHEET 4 B 4 GLY B 45 SER B 50 -1 N TYR B 47 O LEU B 93 SHEET 1 C 6 GLN B 75 HIS B 78 0 SHEET 2 C 6 GLU B 55 ALA B 68 -1 N ALA B 64 O LEU B 77 SHEET 3 C 6 SER B 90 SER B 104 -1 O ASP B 100 N LEU B 60 SHEET 4 C 6 MSE B 36 LEU B 42 -1 N THR B 40 O TYR B 101 SHEET 5 C 6 ARG B 24 LEU B 31 -1 N ARG B 27 O LEU B 39 SHEET 6 C 6 ARG B 17 SER B 19 -1 N SER B 19 O ARG B 24 SHEET 1 D 9 GLN B 75 HIS B 78 0 SHEET 2 D 9 GLU B 55 ALA B 68 -1 N ALA B 64 O LEU B 77 SHEET 3 D 9 SER B 90 SER B 104 -1 O ASP B 100 N LEU B 60 SHEET 4 D 9 MSE B 36 LEU B 42 -1 N THR B 40 O TYR B 101 SHEET 5 D 9 ARG B 24 LEU B 31 -1 N ARG B 27 O LEU B 39 SHEET 6 D 9 GLN B 6 GLY B 13 -1 N THR B 10 O ILE B 30 SHEET 7 D 9 GLN A 6 GLY A 13 -1 N VAL A 7 O LEU B 12 SHEET 8 D 9 ARG A 24 LEU A 31 -1 O SER A 28 N GLY A 13 SHEET 9 D 9 ARG A 17 SER A 19 -1 N SER A 19 O ARG A 24 SHEET 1 E12 GLN B 75 HIS B 78 0 SHEET 2 E12 GLU B 55 ALA B 68 -1 N ALA B 64 O LEU B 77 SHEET 3 E12 SER B 90 SER B 104 -1 O ASP B 100 N LEU B 60 SHEET 4 E12 MSE B 36 LEU B 42 -1 N THR B 40 O TYR B 101 SHEET 5 E12 ARG B 24 LEU B 31 -1 N ARG B 27 O LEU B 39 SHEET 6 E12 GLN B 6 GLY B 13 -1 N THR B 10 O ILE B 30 SHEET 7 E12 GLN A 6 GLY A 13 -1 N VAL A 7 O LEU B 12 SHEET 8 E12 ARG A 24 LEU A 31 -1 O SER A 28 N GLY A 13 SHEET 9 E12 MSE A 36 LEU A 42 -1 O LEU A 39 N ARG A 27 SHEET 10 E12 TYR A 91 SER A 104 -1 O TYR A 101 N THR A 40 SHEET 11 E12 GLU A 55 HIS A 67 -1 N THR A 56 O SER A 104 SHEET 12 E12 GLN A 75 HIS A 78 -1 O GLN A 75 N TYR A 66 SHEET 1 F12 GLN B 75 HIS B 78 0 SHEET 2 F12 GLU B 55 ALA B 68 -1 N ALA B 64 O LEU B 77 SHEET 3 F12 SER B 90 SER B 104 -1 O ASP B 100 N LEU B 60 SHEET 4 F12 MSE B 36 LEU B 42 -1 N THR B 40 O TYR B 101 SHEET 5 F12 ARG B 24 LEU B 31 -1 N ARG B 27 O LEU B 39 SHEET 6 F12 GLN B 6 GLY B 13 -1 N THR B 10 O ILE B 30 SHEET 7 F12 GLN A 6 GLY A 13 -1 N VAL A 7 O LEU B 12 SHEET 8 F12 ARG A 24 LEU A 31 -1 O SER A 28 N GLY A 13 SHEET 9 F12 MSE A 36 LEU A 42 -1 O LEU A 39 N ARG A 27 SHEET 10 F12 TYR A 91 SER A 104 -1 O TYR A 101 N THR A 40 SHEET 11 F12 GLU A 55 HIS A 67 -1 N THR A 56 O SER A 104 SHEET 12 F12 SER A 82 ILE A 85 -1 O ILE A 85 N GLU A 55 SHEET 1 G11 GLN B 75 HIS B 78 0 SHEET 2 G11 GLU B 55 ALA B 68 -1 N ALA B 64 O LEU B 77 SHEET 3 G11 SER B 90 SER B 104 -1 O ASP B 100 N LEU B 60 SHEET 4 G11 MSE B 36 LEU B 42 -1 N THR B 40 O TYR B 101 SHEET 5 G11 ARG B 24 LEU B 31 -1 N ARG B 27 O LEU B 39 SHEET 6 G11 GLN B 6 GLY B 13 -1 N THR B 10 O ILE B 30 SHEET 7 G11 GLN A 6 GLY A 13 -1 N VAL A 7 O LEU B 12 SHEET 8 G11 ARG A 24 LEU A 31 -1 O SER A 28 N GLY A 13 SHEET 9 G11 MSE A 36 LEU A 42 -1 O LEU A 39 N ARG A 27 SHEET 10 G11 TYR A 91 SER A 104 -1 O TYR A 101 N THR A 40 SHEET 11 G11 GLY A 45 LEU A 49 -1 N LEU A 49 O TYR A 91 LINK C GLY A 0 N AMSE A 1 1555 1555 1.33 LINK C GLY A 0 N BMSE A 1 1555 1555 1.35 LINK C GLY A 0 N CMSE A 1 1555 1555 1.34 LINK C AMSE A 1 N ALA A 2 1555 1555 1.33 LINK C BMSE A 1 N ALA A 2 1555 1555 1.35 LINK C CMSE A 1 N ALA A 2 1555 1555 1.33 LINK C SER A 35 N AMSE A 36 1555 1555 1.36 LINK C SER A 35 N BMSE A 36 1555 1555 1.31 LINK C SER A 35 N CMSE A 36 1555 1555 1.34 LINK C SER A 35 N DMSE A 36 1555 1555 1.32 LINK C AMSE A 36 N HIS A 37 1555 1555 1.33 LINK C BMSE A 36 N HIS A 37 1555 1555 1.33 LINK C CMSE A 36 N HIS A 37 1555 1555 1.33 LINK C DMSE A 36 N HIS A 37 1555 1555 1.33 LINK C GLY A 62 N MSE A 63 1555 1555 1.32 LINK C MSE A 63 N ALA A 64 1555 1555 1.34 LINK C ASER A 82 N MSE A 83 1555 1555 1.33 LINK C BSER A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N VAL A 84 1555 1555 1.34 LINK C VAL A 95 N AMSE A 96 1555 1555 1.33 LINK C VAL A 95 N BMSE A 96 1555 1555 1.34 LINK C VAL A 95 N CMSE A 96 1555 1555 1.33 LINK C AMSE A 96 N AGLU A 97 1555 1555 1.33 LINK C BMSE A 96 N BGLU A 97 1555 1555 1.32 LINK C CMSE A 96 N CGLU A 97 1555 1555 1.32 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.34 LINK C SER B 35 N AMSE B 36 1555 1555 1.33 LINK C SER B 35 N BMSE B 36 1555 1555 1.33 LINK C AMSE B 36 N AHIS B 37 1555 1555 1.32 LINK C BMSE B 36 N BHIS B 37 1555 1555 1.31 LINK C GLY B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N ALA B 64 1555 1555 1.33 LINK C SER B 82 N AMSE B 83 1555 1555 1.32 LINK C SER B 82 N BMSE B 83 1555 1555 1.34 LINK C SER B 82 N CMSE B 83 1555 1555 1.33 LINK C AMSE B 83 N VAL B 84 1555 1555 1.31 LINK C BMSE B 83 N VAL B 84 1555 1555 1.33 LINK C CMSE B 83 N VAL B 84 1555 1555 1.32 LINK C VAL B 95 N MSE B 96 1555 1555 1.32 LINK C MSE B 96 N GLU B 97 1555 1555 1.33 LINK MG MG A 106 O HOH A 116 1555 1555 2.02 LINK MG MG A 106 O HOH A 145 1555 1555 2.08 LINK MG MG A 106 O HOH A 138 1555 1555 2.06 LINK MG MG A 106 O AHOH A 131 1555 1555 2.09 LINK MG MG A 106 O AHOH A 110 1555 1555 2.01 LINK MG A MG B 106 O HOH B 193 1555 1555 2.08 LINK MG A MG B 106 O AHOH B 118 1555 1555 2.06 SITE 1 AC1 5 HOH A 110 HOH A 116 HOH A 131 HOH A 138 SITE 2 AC1 5 HOH A 145 SITE 1 AC2 4 HOH B 118 HOH B 138 HOH B 193 HOH B 194 SITE 1 AC3 6 ASN B 88 GLU B 94 HOH B 194 HOH B 198 SITE 2 AC3 6 HOH B 241 HOH B 257 CRYST1 30.785 82.028 40.847 90.00 109.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032484 0.000000 0.011787 0.00000 SCALE2 0.000000 0.012191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026044 0.00000