HEADER ISOMERASE 29-SEP-08 3EOZ TITLE CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE MUTASE FROM PLASMODIUM TITLE 2 FALCIPARUM, PFD0660W COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHOGLYCERATE MUTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 100-295; COMPND 5 EC: 5.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PFD0660W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15_TEV-LIC KEYWDS PGAM, MALARIA, STRUCTURAL GENOMICS, ISOMERASE, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,W.TEMPEL,A.LAM,Y.ZHAO,J.LEW,Y.H.LIN,G.WASNEY,M.VEDADI, AUTHOR 2 I.KOZIERADZKI,D.COSSAR,M.SCHAPIRA,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 3 A.BOCHKAREV,A.M.EDWARDS,R.HUI,J.PIZARRO,T.HILLS,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 6 25-OCT-17 3EOZ 1 REMARK REVDAT 5 23-MAY-12 3EOZ 1 JRNL REVDAT 4 24-AUG-11 3EOZ 1 JRNL REVDAT 3 13-JUL-11 3EOZ 1 VERSN REVDAT 2 24-FEB-09 3EOZ 1 VERSN REVDAT 1 25-NOV-08 3EOZ 0 JRNL AUTH T.HILLS,A.SRIVASTAVA,K.AYI,A.K.WERNIMONT,K.KAIN,A.P.WATERS, JRNL AUTH 2 R.HUI,J.C.PIZARRO JRNL TITL CHARACTERIZATION OF A NEW PHOSPHATASE FROM PLASMODIUM. JRNL REF MOL.BIOCHEM.PARASITOL. V. 179 69 2011 JRNL REFN ISSN 0166-6851 JRNL PMID 21689687 JRNL DOI 10.1016/J.MOLBIOPARA.2011.06.001 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0051 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1144 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1411 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2643 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.303 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.415 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2749 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1818 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3732 ; 1.273 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4425 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 6.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;36.024 ;23.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;16.518 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.115 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3019 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 570 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1669 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 671 ; 0.092 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2690 ; 1.398 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1080 ; 1.607 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1039 ; 2.621 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3EOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 23.6330 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : 0.63300 REMARK 200 FOR SHELL : 1.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.13, RESOLVE 2.13 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.99300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.12200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.12200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.48950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.12200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.12200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.49650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.12200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.12200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.48950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.12200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.12200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.49650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.99300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 GLU A 12 REMARK 465 ASN A 13 REMARK 465 LEU A 14 REMARK 465 TYR A 15 REMARK 465 PHE A 16 REMARK 465 GLN A 17 REMARK 465 GLY A 18 REMARK 465 GLN A 31 REMARK 465 TYR A 32 REMARK 465 GLU A 33 REMARK 465 ARG A 34 REMARK 465 ARG A 35 REMARK 465 TYR A 36 REMARK 465 LYS A 37 REMARK 465 ASP A 38 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 ASN A 41 REMARK 465 SER A 42 REMARK 465 LYS A 43 REMARK 465 ARG A 44 REMARK 465 LEU A 45 REMARK 465 PRO A 107 REMARK 465 TYR A 108 REMARK 465 LEU A 109 REMARK 465 PRO A 110 REMARK 465 ASP A 111 REMARK 465 PRO A 112 REMARK 465 LEU A 113 REMARK 465 PRO A 114 REMARK 465 ARG A 115 REMARK 465 HIS A 116 REMARK 465 SER A 117 REMARK 465 LYS A 118 REMARK 465 PHE A 119 REMARK 465 ASP A 120 REMARK 465 ALA A 121 REMARK 465 GLN A 122 REMARK 465 LYS A 123 REMARK 465 ILE A 124 REMARK 465 LYS A 125 REMARK 465 GLU A 126 REMARK 465 ASP A 127 REMARK 465 ASN A 128 REMARK 465 MSE B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 ARG B 11 REMARK 465 GLU B 12 REMARK 465 ASN B 13 REMARK 465 LEU B 14 REMARK 465 TYR B 15 REMARK 465 PHE B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 ASN B 19 REMARK 465 THR B 20 REMARK 465 GLY B 30 REMARK 465 GLN B 31 REMARK 465 TYR B 32 REMARK 465 GLU B 33 REMARK 465 ARG B 34 REMARK 465 ARG B 35 REMARK 465 TYR B 36 REMARK 465 LYS B 37 REMARK 465 ASP B 38 REMARK 465 ASP B 39 REMARK 465 GLU B 40 REMARK 465 ASN B 41 REMARK 465 SER B 42 REMARK 465 LYS B 43 REMARK 465 GLY B 144 REMARK 465 SER B 178 REMARK 465 SER B 179 REMARK 465 ASP B 191 REMARK 465 GLU B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 ASP A 145 CB CG OD1 OD2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS B 22 CD CE NZ REMARK 470 ARG B 44 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 51 CB CG CD CE NZ REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 ASP B 93 CG OD1 OD2 REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 SER B 143 OG REMARK 470 ASP B 145 CG OD1 OD2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 ASP B 190 CG OD1 OD2 REMARK 470 ARG B 198 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 140 O3 PO4 B 215 2.01 REMARK 500 O PHE B 177 O HOH B 243 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 -124.62 51.07 REMARK 500 PHE A 139 46.21 -103.18 REMARK 500 ASN A 181 56.25 -155.52 REMARK 500 GLU B 48 -5.64 65.60 REMARK 500 LYS B 89 -37.89 -39.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 218 DBREF 3EOZ A 19 214 UNP Q8I1V2 Q8I1V2_PLAF7 100 295 DBREF 3EOZ B 19 214 UNP Q8I1V2 Q8I1V2_PLAF7 100 295 SEQADV 3EOZ MSE A 1 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS A 2 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS A 3 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS A 4 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS A 5 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS A 6 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS A 7 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ SER A 8 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ SER A 9 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ GLY A 10 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ ARG A 11 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ GLU A 12 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ ASN A 13 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ LEU A 14 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ TYR A 15 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ PHE A 16 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ GLN A 17 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ GLY A 18 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ MSE B 1 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS B 2 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS B 3 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS B 4 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS B 5 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS B 6 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ HIS B 7 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ SER B 8 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ SER B 9 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ GLY B 10 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ ARG B 11 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ GLU B 12 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ ASN B 13 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ LEU B 14 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ TYR B 15 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ PHE B 16 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ GLN B 17 UNP Q8I1V2 EXPRESSION TAG SEQADV 3EOZ GLY B 18 UNP Q8I1V2 EXPRESSION TAG SEQRES 1 A 214 MSE HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 214 LEU TYR PHE GLN GLY ASN THR THR LYS HIS ILE ILE LEU SEQRES 3 A 214 VAL ARG HIS GLY GLN TYR GLU ARG ARG TYR LYS ASP ASP SEQRES 4 A 214 GLU ASN SER LYS ARG LEU THR LYS GLU GLY CYS LYS GLN SEQRES 5 A 214 ALA ASP ILE THR GLY LYS LYS LEU LYS ASP ILE LEU ASN SEQRES 6 A 214 ASN LYS LYS VAL SER VAL ILE TYR HIS SER ASP MSE ILE SEQRES 7 A 214 ARG ALA LYS GLU THR ALA ASN ILE ILE SER LYS TYR PHE SEQRES 8 A 214 PRO ASP ALA ASN LEU ILE ASN ASP PRO ASN LEU ASN GLU SEQRES 9 A 214 GLY THR PRO TYR LEU PRO ASP PRO LEU PRO ARG HIS SER SEQRES 10 A 214 LYS PHE ASP ALA GLN LYS ILE LYS GLU ASP ASN LYS ARG SEQRES 11 A 214 ILE ASN LYS ALA TYR GLU THR TYR PHE TYR LYS PRO SER SEQRES 12 A 214 GLY ASP GLU ASP GLU TYR GLN LEU VAL ILE CYS HIS GLY SEQRES 13 A 214 ASN VAL ILE ARG TYR PHE LEU CYS ARG ALA LEU GLN ILE SEQRES 14 A 214 PRO LEU PHE ALA TRP LEU ARG PHE SER SER TYR ASN CYS SEQRES 15 A 214 GLY ILE THR TRP LEU VAL LEU ASP ASP GLU GLY SER VAL SEQRES 16 A 214 VAL LEU ARG GLU PHE GLY SER VAL SER HIS LEU PRO PHE SEQRES 17 A 214 GLU SER VAL THR TYR PHE SEQRES 1 B 214 MSE HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 214 LEU TYR PHE GLN GLY ASN THR THR LYS HIS ILE ILE LEU SEQRES 3 B 214 VAL ARG HIS GLY GLN TYR GLU ARG ARG TYR LYS ASP ASP SEQRES 4 B 214 GLU ASN SER LYS ARG LEU THR LYS GLU GLY CYS LYS GLN SEQRES 5 B 214 ALA ASP ILE THR GLY LYS LYS LEU LYS ASP ILE LEU ASN SEQRES 6 B 214 ASN LYS LYS VAL SER VAL ILE TYR HIS SER ASP MSE ILE SEQRES 7 B 214 ARG ALA LYS GLU THR ALA ASN ILE ILE SER LYS TYR PHE SEQRES 8 B 214 PRO ASP ALA ASN LEU ILE ASN ASP PRO ASN LEU ASN GLU SEQRES 9 B 214 GLY THR PRO TYR LEU PRO ASP PRO LEU PRO ARG HIS SER SEQRES 10 B 214 LYS PHE ASP ALA GLN LYS ILE LYS GLU ASP ASN LYS ARG SEQRES 11 B 214 ILE ASN LYS ALA TYR GLU THR TYR PHE TYR LYS PRO SER SEQRES 12 B 214 GLY ASP GLU ASP GLU TYR GLN LEU VAL ILE CYS HIS GLY SEQRES 13 B 214 ASN VAL ILE ARG TYR PHE LEU CYS ARG ALA LEU GLN ILE SEQRES 14 B 214 PRO LEU PHE ALA TRP LEU ARG PHE SER SER TYR ASN CYS SEQRES 15 B 214 GLY ILE THR TRP LEU VAL LEU ASP ASP GLU GLY SER VAL SEQRES 16 B 214 VAL LEU ARG GLU PHE GLY SER VAL SER HIS LEU PRO PHE SEQRES 17 B 214 GLU SER VAL THR TYR PHE MODRES 3EOZ MSE A 77 MET SELENOMETHIONINE MODRES 3EOZ MSE B 77 MET SELENOMETHIONINE HET MSE A 77 8 HET MSE B 77 8 HET GOL A 215 6 HET PO4 B 215 5 HET PO4 B 216 5 HET GOL B 217 6 HET GOL B 218 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 PO4 2(O4 P 3-) FORMUL 8 HOH *102(H2 O) HELIX 1 1 THR A 46 ASN A 65 1 20 HELIX 2 2 MSE A 77 LYS A 89 1 13 HELIX 3 3 PRO A 100 ASN A 103 5 4 HELIX 4 4 ARG A 130 PHE A 139 1 10 HELIX 5 5 HIS A 155 GLN A 168 1 14 HELIX 6 6 PRO A 170 SER A 178 1 9 HELIX 7 7 PHE A 200 SER A 204 5 5 HELIX 8 8 GLU B 48 ASN B 65 1 18 HELIX 9 9 MSE B 77 LYS B 89 1 13 HELIX 10 10 PRO B 100 ASN B 103 5 4 HELIX 11 11 LEU B 113 TYR B 140 1 28 HELIX 12 12 HIS B 155 LEU B 167 1 13 HELIX 13 13 PRO B 170 PHE B 177 1 8 SHEET 1 A 6 ASN A 95 ASN A 98 0 SHEET 2 A 6 VAL A 69 HIS A 74 1 N ILE A 72 O ASN A 95 SHEET 3 A 6 GLU A 148 CYS A 154 1 O LEU A 151 N TYR A 73 SHEET 4 A 6 THR A 21 ARG A 28 1 N ILE A 25 O GLN A 150 SHEET 5 A 6 ILE A 184 ASP A 190 -1 O LEU A 189 N LYS A 22 SHEET 6 A 6 VAL A 195 ARG A 198 -1 O VAL A 196 N VAL A 188 SHEET 1 B 8 GLU A 209 TYR A 213 0 SHEET 2 B 8 LEU B 206 TYR B 213 -1 O GLU B 209 N TYR A 213 SHEET 3 B 8 VAL B 196 VAL B 203 -1 N GLU B 199 O SER B 210 SHEET 4 B 8 CYS B 182 LEU B 189 -1 N TRP B 186 O ARG B 198 SHEET 5 B 8 LYS B 22 ARG B 28 -1 N LEU B 26 O THR B 185 SHEET 6 B 8 GLU B 148 CYS B 154 1 O CYS B 154 N VAL B 27 SHEET 7 B 8 LYS B 68 HIS B 74 1 N TYR B 73 O LEU B 151 SHEET 8 B 8 ASN B 95 ASN B 98 1 O ASN B 95 N SER B 70 LINK C ASP A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N ILE A 78 1555 1555 1.33 LINK C ASP B 76 N MSE B 77 1555 1555 1.34 LINK C MSE B 77 N ILE B 78 1555 1555 1.33 CISPEP 1 LEU B 189 ASP B 190 0 -12.91 SITE 1 AC1 5 GLU A 199 GLY A 201 SER A 204 PRO A 207 SITE 2 AC1 5 SER A 210 SITE 1 AC2 5 ASN A 181 TYR B 135 TYR B 140 ARG B 165 SITE 2 AC2 5 HOH B 257 SITE 1 AC3 5 ARG B 28 HIS B 29 ARG B 79 HIS B 155 SITE 2 AC3 5 GLY B 156 SITE 1 AC4 4 ILE B 169 PHE B 172 ARG B 176 GLU B 199 SITE 1 AC5 6 ILE B 55 THR B 56 GLY B 201 PRO B 207 SITE 2 AC5 6 HOH B 246 HOH B 252 CRYST1 116.244 116.244 81.986 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012197 0.00000