HEADER TRANSFERASE/DNA 29-SEP-08 3EPG TITLE STRUCTURE OF HUMAN DNA POLYMERASE IOTA COMPLEXED WITH N2-ETHYLGUANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IOTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC FRAGMENT (UNP RESIDUES 1-420); COMPND 5 SYNONYM: RAD30 HOMOLOG B, ETA2; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*DTP*DCP*DTP*(2EG) COMPND 10 P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3'; COMPND 11 CHAIN: B, C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLI, POLI (AMINO ACIDS 1-420), RAD30B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA 2 CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: A SELF-ANNEALING OLIGONUCLETOIDE WAS SYNTHESIZED BY SOURCE 14 MIDLAND CERTIFIED REAGENTS CONTAINING N2-ETHYLGAUNINE USING SOURCE 15 PHOSPHORAMIDITE CHEMISTRY KEYWDS DNA POL IOTA, LESION BYPASS, N2-ETHYLGUANINE, DNA DAMAGE, DNA REPAIR, KEYWDS 2 DNA REPLICATION, DNA SYNTHESIS, DNA-BINDING, DNA-DIRECTED DNA KEYWDS 3 POLYMERASE, MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, KEYWDS 4 NUCLEOTIDYLTRANSFERASE, NUCLEUS, SCHIFF BASE, TRANSFERASE, KEYWDS 5 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.PENCE REVDAT 4 06-SEP-23 3EPG 1 REMARK LINK REVDAT 3 13-JUL-11 3EPG 1 VERSN REVDAT 2 01-DEC-09 3EPG 1 JRNL REVDAT 1 16-DEC-08 3EPG 0 JRNL AUTH M.G.PENCE,P.BLANS,C.N.ZINK,T.HOLLIS,J.C.FISHBEIN,F.W.PERRINO JRNL TITL LESION BYPASS OF N2-ETHYLGUANINE BY HUMAN DNA POLYMERASE JRNL TITL 2 IOTA. JRNL REF J.BIOL.CHEM. V. 284 1732 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 18984581 JRNL DOI 10.1074/JBC.M807296200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2896 REMARK 3 NUCLEIC ACID ATOMS : 310 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.427 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3288 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4513 ; 1.806 ; 2.124 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 6.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;40.711 ;24.715 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;19.237 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2310 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1501 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2211 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 122 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.431 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.301 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1869 ; 0.516 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3011 ; 0.968 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1498 ; 1.574 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1502 ; 2.519 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3470 -17.3270 21.3510 REMARK 3 T TENSOR REMARK 3 T11: -0.0620 T22: -0.0578 REMARK 3 T33: 0.0576 T12: -0.1182 REMARK 3 T13: 0.0016 T23: 0.0980 REMARK 3 L TENSOR REMARK 3 L11: 8.5998 L22: 4.7823 REMARK 3 L33: 11.1272 L12: -0.3128 REMARK 3 L13: 6.0795 L23: -1.4022 REMARK 3 S TENSOR REMARK 3 S11: -0.3745 S12: 0.1067 S13: 0.6346 REMARK 3 S21: 0.5012 S22: -0.2793 S23: -1.3135 REMARK 3 S31: -0.8267 S32: 1.2782 S33: 0.6539 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7440 -16.0960 3.8290 REMARK 3 T TENSOR REMARK 3 T11: -0.1752 T22: -0.2545 REMARK 3 T33: -0.2489 T12: 0.0337 REMARK 3 T13: 0.0287 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.0999 L22: 1.5517 REMARK 3 L33: 7.1519 L12: 0.6249 REMARK 3 L13: -1.2166 L23: -0.6420 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.1450 S13: 0.0986 REMARK 3 S21: -0.2308 S22: -0.1083 S23: 0.2046 REMARK 3 S31: -0.3418 S32: -0.5995 S33: 0.0847 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5420 -36.5410 9.3980 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: -0.0373 REMARK 3 T33: 0.1031 T12: -0.0497 REMARK 3 T13: 0.0436 T23: 0.0789 REMARK 3 L TENSOR REMARK 3 L11: 1.0463 L22: 0.7296 REMARK 3 L33: 4.1136 L12: 0.3610 REMARK 3 L13: -1.5072 L23: -0.4831 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.2903 S13: -0.6459 REMARK 3 S21: 0.1499 S22: -0.2969 S23: -0.4943 REMARK 3 S31: 0.9515 S32: 0.5259 S33: 0.3371 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6200 -43.0140 33.2490 REMARK 3 T TENSOR REMARK 3 T11: 0.3634 T22: 0.1086 REMARK 3 T33: -0.0323 T12: -0.2715 REMARK 3 T13: -0.1320 T23: 0.2421 REMARK 3 L TENSOR REMARK 3 L11: 7.3924 L22: 11.1150 REMARK 3 L33: 6.3145 L12: 1.0261 REMARK 3 L13: 3.7197 L23: -0.7787 REMARK 3 S TENSOR REMARK 3 S11: 0.3159 S12: -0.6563 S13: -0.4836 REMARK 3 S21: 0.9276 S22: 0.0439 S23: -0.0575 REMARK 3 S31: 0.5091 S32: -0.4501 S33: -0.3597 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 841 C 847 REMARK 3 RESIDUE RANGE : B 7 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5710 -39.2930 16.6790 REMARK 3 T TENSOR REMARK 3 T11: -0.0904 T22: -0.0938 REMARK 3 T33: 0.0374 T12: -0.0689 REMARK 3 T13: -0.0403 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 1.7554 L22: 3.4246 REMARK 3 L33: 6.2816 L12: 0.6831 REMARK 3 L13: -1.5294 L23: -1.0764 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.0643 S13: -0.5171 REMARK 3 S21: -0.2769 S22: -0.1009 S23: -0.2992 REMARK 3 S31: 0.4946 S32: -0.1600 S33: 0.1564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 17.77 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.73 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ALZ MINUS DNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-15% PEG MME 5000, 0.2-0.4M AMMONIUM REMARK 280 SULFATE, 0.1M MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.90267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.45133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.17700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.72567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 168.62833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 134.90267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.45133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.72567 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.17700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 168.62833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -49.26750 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -85.33381 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.72567 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 GLN A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 ASN A 24 REMARK 465 SER A 351 REMARK 465 GLU A 352 REMARK 465 LYS A 353 REMARK 465 HIS A 354 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 THR A 374 REMARK 465 GLY A 375 REMARK 465 ASN A 376 REMARK 465 TYR A 377 REMARK 465 LYS A 398 REMARK 465 MET A 399 REMARK 465 PRO A 400 REMARK 465 PHE A 401 REMARK 465 HIS A 402 REMARK 465 ALA A 415 REMARK 465 LEU A 416 REMARK 465 ASN A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 LYS A 420 REMARK 465 DT B -4 REMARK 465 DC B -3 REMARK 465 DT B -2 REMARK 465 2EG B -1 REMARK 465 DG B 0 REMARK 465 DG B 1 REMARK 465 DG B 2 REMARK 465 DT B 3 REMARK 465 DC B 4 REMARK 465 DC B 5 REMARK 465 DT B 6 REMARK 465 DT C 837 REMARK 465 DC C 838 REMARK 465 DT C 839 REMARK 465 DA C 848 REMARK 465 DG C 849 REMARK 465 DG C 850 REMARK 465 DA C 851 REMARK 465 DC C 852 REMARK 465 DC C 853 REMARK 465 DOC C 854 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 TYR A 61 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 SER A 276 OG REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 TYR A 349 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 371 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 8 C6 DG B 8 N1 -0.051 REMARK 500 DG B 8 C5 DG B 8 N7 -0.040 REMARK 500 DG B 9 C5 DG B 9 N7 -0.046 REMARK 500 DG B 9 C8 DG B 9 N9 -0.046 REMARK 500 DG B 9 N9 DG B 9 C4 -0.053 REMARK 500 DC B 11 N1 DC B 11 C6 0.044 REMARK 500 DC B 11 C2 DC B 11 N3 0.054 REMARK 500 DC B 11 N3 DC B 11 C4 0.060 REMARK 500 DC B 11 C5 DC B 11 C6 0.063 REMARK 500 DC B 12 N1 DC B 12 C6 0.053 REMARK 500 DC B 12 N3 DC B 12 C4 0.088 REMARK 500 DC B 12 C5 DC B 12 C6 0.050 REMARK 500 DC B 12 O3' DOC B 13 P -0.105 REMARK 500 2EG C 840 O3' DG C 841 P -0.075 REMARK 500 DG C 841 N1 DG C 841 C2 -0.050 REMARK 500 DG C 841 C6 DG C 841 N1 -0.046 REMARK 500 DG C 841 C5 DG C 841 N7 -0.038 REMARK 500 DG C 841 N7 DG C 841 C8 -0.043 REMARK 500 DG C 841 C8 DG C 841 N9 -0.046 REMARK 500 DG C 842 P DG C 842 OP1 -0.102 REMARK 500 DG C 842 P DG C 842 OP2 -0.115 REMARK 500 DG C 842 P DG C 842 O5' -0.175 REMARK 500 DG C 842 C6 DG C 842 N1 -0.055 REMARK 500 DG C 842 C5 DG C 842 N7 -0.102 REMARK 500 DG C 842 C8 DG C 842 N9 -0.090 REMARK 500 DG C 842 N9 DG C 842 C4 -0.072 REMARK 500 DG C 842 O3' DG C 843 P -0.086 REMARK 500 DG C 843 C5 DG C 843 N7 -0.045 REMARK 500 DG C 843 N7 DG C 843 C8 0.041 REMARK 500 DG C 843 O3' DT C 844 P -0.075 REMARK 500 DT C 844 P DT C 844 OP1 -0.108 REMARK 500 DT C 844 P DT C 844 O5' -0.080 REMARK 500 DT C 844 O3' DT C 844 C3' -0.044 REMARK 500 DT C 844 C2 DT C 844 N3 -0.057 REMARK 500 DT C 844 N3 DT C 844 C4 -0.066 REMARK 500 DT C 844 C4 DT C 844 C5 -0.062 REMARK 500 DT C 844 C2 DT C 844 O2 -0.048 REMARK 500 DT C 844 C4 DT C 844 O4 -0.070 REMARK 500 DC C 845 O4' DC C 845 C1' -0.114 REMARK 500 DC C 845 O4' DC C 845 C4' -0.133 REMARK 500 DC C 845 C4 DC C 845 N4 -0.057 REMARK 500 DC C 845 N1 DC C 845 C2 -0.060 REMARK 500 DC C 845 C4 DC C 845 C5 -0.075 REMARK 500 DC C 846 N1 DC C 846 C6 0.037 REMARK 500 DC C 846 C2 DC C 846 N3 0.060 REMARK 500 DC C 846 N3 DC C 846 C4 0.067 REMARK 500 DC C 846 C5 DC C 846 C6 0.051 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 8 O4' - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 DG B 9 O4' - C4' - C3' ANGL. DEV. = -4.3 DEGREES REMARK 500 DG B 9 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG B 9 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG B 9 C6 - N1 - C2 ANGL. DEV. = -5.3 DEGREES REMARK 500 DG B 9 C2 - N3 - C4 ANGL. DEV. = 8.6 DEGREES REMARK 500 DG B 9 N3 - C4 - C5 ANGL. DEV. = -7.3 DEGREES REMARK 500 DG B 9 C5 - C6 - N1 ANGL. DEV. = 6.6 DEGREES REMARK 500 DG B 9 C4 - C5 - N7 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG B 9 C5 - N7 - C8 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG B 9 N7 - C8 - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG B 9 C8 - N9 - C4 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG B 9 N3 - C4 - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG B 9 C6 - C5 - N7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG B 9 C5 - C6 - O6 ANGL. DEV. = -6.1 DEGREES REMARK 500 DC B 11 N3 - C4 - C5 ANGL. DEV. = -2.7 DEGREES REMARK 500 DC B 12 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 2EG C 840 C3' - O3' - P ANGL. DEV. = 10.4 DEGREES REMARK 500 DG C 841 O3' - P - OP1 ANGL. DEV. = 8.1 DEGREES REMARK 500 DG C 842 O3' - P - O5' ANGL. DEV. = -11.6 DEGREES REMARK 500 DG C 842 O5' - P - OP1 ANGL. DEV. = 10.8 DEGREES REMARK 500 DG C 842 C5' - C4' - C3' ANGL. DEV. = 10.7 DEGREES REMARK 500 DG C 842 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 DG C 842 C2 - N3 - C4 ANGL. DEV. = 9.5 DEGREES REMARK 500 DG C 842 N3 - C4 - C5 ANGL. DEV. = -10.2 DEGREES REMARK 500 DG C 842 C5 - C6 - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DG C 842 C4 - C5 - N7 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 842 C5 - N7 - C8 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG C 842 N7 - C8 - N9 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG C 842 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 842 N3 - C4 - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 DG C 842 C5 - C6 - O6 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG C 843 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG C 843 C6 - N1 - C2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG C 843 C2 - N3 - C4 ANGL. DEV. = 9.1 DEGREES REMARK 500 DG C 843 N3 - C4 - C5 ANGL. DEV. = -7.4 DEGREES REMARK 500 DG C 843 C5 - C6 - N1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DG C 843 C4 - C5 - N7 ANGL. DEV. = -3.5 DEGREES REMARK 500 DG C 843 C5 - N7 - C8 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG C 843 N7 - C8 - N9 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG C 843 N3 - C4 - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DG C 843 C6 - C5 - N7 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG C 843 C5 - C6 - O6 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT C 844 O4' - C4' - C3' ANGL. DEV. = -5.9 DEGREES REMARK 500 DT C 844 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES REMARK 500 DC C 845 O4' - C4' - C3' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC C 845 C5' - C4' - C3' ANGL. DEV. = -22.5 DEGREES REMARK 500 DC C 845 O4' - C1' - C2' ANGL. DEV. = -8.3 DEGREES REMARK 500 DC C 845 O4' - C1' - N1 ANGL. DEV. = -7.4 DEGREES REMARK 500 DC C 845 C6 - N1 - C2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 54 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -0.89 84.39 REMARK 500 PRO A 48 -30.83 -34.66 REMARK 500 ASP A 52 40.32 39.21 REMARK 500 LYS A 60 -127.13 51.90 REMARK 500 GLU A 69 10.33 -66.60 REMARK 500 ALA A 70 -27.01 -147.38 REMARK 500 LEU A 73 31.84 -77.91 REMARK 500 PHE A 116 -72.49 -71.42 REMARK 500 GLN A 141 -31.95 -32.47 REMARK 500 GLU A 147 8.41 -64.05 REMARK 500 ASN A 160 29.90 49.73 REMARK 500 ALA A 200 -175.88 -174.02 REMARK 500 PRO A 240 108.94 -58.52 REMARK 500 LEU A 273 -22.43 -147.94 REMARK 500 SER A 312 82.39 133.85 REMARK 500 SER A 313 82.09 164.13 REMARK 500 ASN A 319 -70.93 -68.81 REMARK 500 CYS A 333 -71.89 -59.11 REMARK 500 ASP A 335 -50.30 -27.63 REMARK 500 GLN A 370 88.28 -64.42 REMARK 500 ILE A 386 -75.50 -31.07 REMARK 500 ASN A 396 -79.97 -83.94 REMARK 500 CYS A 411 -157.02 -132.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 52 LYS A 53 144.20 REMARK 500 LYS A 87 CYS A 88 -138.73 REMARK 500 CYS A 88 PRO A 89 -100.21 REMARK 500 PRO A 89 GLN A 90 128.02 REMARK 500 GLN A 90 LEU A 91 132.18 REMARK 500 GLN A 141 GLN A 142 -147.46 REMARK 500 LYS A 309 LYS A 310 130.65 REMARK 500 SER A 312 SER A 313 -146.56 REMARK 500 SER A 313 GLU A 314 -141.08 REMARK 500 GLU A 314 VAL A 315 -147.86 REMARK 500 ASP A 378 VAL A 379 -141.72 REMARK 500 ASN A 396 VAL A 397 -101.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 421 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 237 O REMARK 620 2 ILE A 239 O 103.6 REMARK 620 3 ILE A 242 O 82.6 83.0 REMARK 620 4 DC B 12 OP1 151.5 91.6 75.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 875 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ALZ RELATED DB: PDB REMARK 900 STRUCTURE OF DNA POLYMERASE IOTA WITH TEMPLATE GUANINE AND INCOMING REMARK 900 DCTP REMARK 900 RELATED ID: 2FLP RELATED DB: PDB REMARK 900 BINARY STRUCTURE OF DNA POLYMERASE IOTA WITH TEMPLATE GUANINE REMARK 900 RELATED ID: 3EPI RELATED DB: PDB DBREF 3EPG A 1 420 UNP Q9UNA4 POLI_HUMAN 1 420 DBREF 3EPG B -4 13 PDB 3EPG 3EPG -4 13 DBREF 3EPG C 837 854 PDB 3EPG 3EPG 837 854 SEQRES 1 A 420 MET GLU LEU ALA ASP VAL GLY ALA ALA ALA SER SER GLN SEQRES 2 A 420 GLY VAL HIS ASP GLN VAL LEU PRO THR PRO ASN ALA SER SEQRES 3 A 420 SER ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS PHE TYR SEQRES 4 A 420 ALA GLN VAL GLU MET ILE SER ASN PRO GLU LEU LYS ASP SEQRES 5 A 420 LYS PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL VAL THR SEQRES 6 A 420 CYS ASN TYR GLU ALA ARG LYS LEU GLY VAL LYS LYS LEU SEQRES 7 A 420 MET ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO GLN LEU SEQRES 8 A 420 VAL LEU VAL ASN GLY GLU ASP LEU THR ARG TYR ARG GLU SEQRES 9 A 420 MET SER TYR LYS VAL THR GLU LEU LEU GLU GLU PHE SER SEQRES 10 A 420 PRO VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN PHE VAL SEQRES 11 A 420 ASP LEU THR GLU MET VAL GLU LYS ARG LEU GLN GLN LEU SEQRES 12 A 420 GLN SER ASP GLU LEU SER ALA VAL THR VAL SER GLY HIS SEQRES 13 A 420 VAL TYR ASN ASN GLN SER ILE ASN LEU LEU ASP VAL LEU SEQRES 14 A 420 HIS ILE ARG LEU LEU VAL GLY SER GLN ILE ALA ALA GLU SEQRES 15 A 420 MET ARG GLU ALA MET TYR ASN GLN LEU GLY LEU THR GLY SEQRES 16 A 420 CYS ALA GLY VAL ALA SER ASN LYS LEU LEU ALA LYS LEU SEQRES 17 A 420 VAL SER GLY VAL PHE LYS PRO ASN GLN GLN THR VAL LEU SEQRES 18 A 420 LEU PRO GLU SER CYS GLN HIS LEU ILE HIS SER LEU ASN SEQRES 19 A 420 HIS ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS THR ALA SEQRES 20 A 420 LYS CYS LEU GLU ALA LEU GLY ILE ASN SER VAL ARG ASP SEQRES 21 A 420 LEU GLN THR PHE SER PRO LYS ILE LEU GLU LYS GLU LEU SEQRES 22 A 420 GLY ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SER PHE SEQRES 23 A 420 GLY GLU ASP ASN SER PRO VAL ILE LEU SER GLY PRO PRO SEQRES 24 A 420 GLN SER PHE SER GLU GLU ASP SER PHE LYS LYS CYS SER SEQRES 25 A 420 SER GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU LEU LEU SEQRES 26 A 420 ALA SER LEU LEU ASN ARG VAL CYS GLN ASP GLY ARG LYS SEQRES 27 A 420 PRO HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SER SER SEQRES 28 A 420 GLU LYS HIS TYR GLY ARG GLU SER ARG GLN CYS PRO ILE SEQRES 29 A 420 PRO SER HIS VAL ILE GLN LYS LEU GLY THR GLY ASN TYR SEQRES 30 A 420 ASP VAL MET THR PRO MET VAL ASP ILE LEU MET LYS LEU SEQRES 31 A 420 PHE ARG ASN MET VAL ASN VAL LYS MET PRO PHE HIS LEU SEQRES 32 A 420 THR LEU LEU SER VAL CYS PHE CYS ASN LEU LYS ALA LEU SEQRES 33 A 420 ASN THR ALA LYS SEQRES 1 B 18 DT DC DT 2EG DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DOC SEQRES 1 C 18 DT DC DT 2EG DG DG DG DT DC DC DT DA DG SEQRES 2 C 18 DG DA DC DC DOC MODRES 3EPG DOC B 13 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 3EPG 2EG C 840 G 2'-DEOXY-N-ETHYLGUANOSINE 5'-PHOSPHATE HET DOC B 13 18 HET 2EG C 840 24 HET DCP A 875 28 HET NA A 421 1 HET NA A 422 1 HET NA A 423 1 HET NA C 1 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM 2EG 2'-DEOXY-N-ETHYLGUANOSINE 5'-PHOSPHATE HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM NA SODIUM ION FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 3 2EG C12 H18 N5 O7 P FORMUL 4 DCP C9 H16 N3 O13 P3 FORMUL 5 NA 4(NA 1+) FORMUL 9 HOH *69(H2 O) HELIX 1 1 CYS A 37 ASN A 47 1 11 HELIX 2 2 PRO A 48 LYS A 51 5 4 HELIX 3 3 ASN A 67 LYS A 72 1 6 HELIX 4 4 VAL A 81 LYS A 87 1 7 HELIX 5 5 LEU A 99 SER A 117 1 19 HELIX 6 6 LEU A 132 GLN A 141 1 10 HELIX 7 7 SER A 145 SER A 149 5 5 HELIX 8 8 ASN A 159 GLN A 161 5 3 HELIX 9 9 ASP A 167 GLY A 192 1 26 HELIX 10 10 ASN A 202 GLY A 211 1 10 HELIX 11 11 LEU A 222 GLU A 224 5 3 HELIX 12 12 SER A 225 LEU A 233 1 9 HELIX 13 13 HIS A 235 ILE A 239 5 5 HELIX 14 14 GLY A 243 GLY A 254 1 12 HELIX 15 15 SER A 257 THR A 263 1 7 HELIX 16 16 SER A 265 GLY A 274 1 10 HELIX 17 17 GLY A 274 PHE A 286 1 13 HELIX 18 18 SER A 313 GLY A 336 1 24 HELIX 19 19 PRO A 365 GLN A 370 1 6 HELIX 20 20 VAL A 379 ASN A 393 1 15 SHEET 1 A 6 VAL A 120 LEU A 123 0 SHEET 2 A 6 GLU A 127 ASP A 131 -1 O GLU A 127 N LEU A 123 SHEET 3 A 6 ILE A 30 LEU A 35 -1 N VAL A 33 O ASN A 128 SHEET 4 A 6 GLY A 195 ALA A 200 -1 O ALA A 200 N ILE A 30 SHEET 5 A 6 GLN A 218 VAL A 220 1 O THR A 219 N VAL A 199 SHEET 6 A 6 HIS A 156 VAL A 157 1 N HIS A 156 O GLN A 218 SHEET 1 B 4 MET A 79 ASN A 80 0 SHEET 2 B 4 LEU A 62 CYS A 66 -1 N VAL A 63 O MET A 79 SHEET 3 B 4 LEU A 55 GLN A 59 -1 N VAL A 57 O THR A 65 SHEET 4 B 4 VAL A 92 ASN A 95 1 O VAL A 94 N GLN A 58 SHEET 1 C 4 PHE A 302 SER A 307 0 SHEET 2 C 4 LEU A 405 LYS A 414 -1 O LEU A 406 N ASP A 306 SHEET 3 C 4 LYS A 338 ARG A 347 -1 N LYS A 338 O LYS A 414 SHEET 4 C 4 ARG A 357 PRO A 363 -1 O ARG A 360 N LEU A 344 LINK O3' DC B 12 P DOC B 13 1555 1555 1.50 LINK O3' 2EG C 840 P DG C 841 1555 1555 1.53 LINK O LYS A 237 NA NA A 421 1555 1555 2.56 LINK O ILE A 239 NA NA A 421 1555 1555 2.47 LINK O ILE A 242 NA NA A 421 1555 1555 2.71 LINK NA NA A 421 OP1 DC B 12 1555 1555 2.61 CISPEP 1 LYS A 214 PRO A 215 0 1.73 CISPEP 2 TYR A 349 SER A 350 0 -2.66 CISPEP 3 TYR A 355 GLY A 356 0 7.02 SITE 1 AC1 15 ASP A 34 LEU A 35 CYS A 37 PHE A 38 SITE 2 AC1 15 TYR A 39 VAL A 64 THR A 65 TYR A 68 SITE 3 AC1 15 ARG A 71 LYS A 77 ASP A 126 LYS A 214 SITE 4 AC1 15 DOC B 13 2EG C 840 DG C 841 SITE 1 AC2 4 LYS A 237 ILE A 239 ILE A 242 DC B 12 SITE 1 AC3 1 GLU A 115 SITE 1 AC4 1 DC C 845 CRYST1 98.535 98.535 202.354 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010149 0.005859 0.000000 0.00000 SCALE2 0.000000 0.011719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004942 0.00000