HEADER HYDROLASE 29-SEP-08 3EPR TITLE CRYSTAL STRUCTURE OF PUTATIVE HAD SUPERFAMILY HYDROLASE FROM TITLE 2 STREPTOCOCCUS AGALACTIAE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE, HALOACID DEHALOGENASE-LIKE FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE SEROGROUP V; SOURCE 3 ORGANISM_TAXID: 216466; SOURCE 4 GENE: SAG0892; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, HAD SUPERFAMILY HYDROLASE., KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,M.DICKEY,B.K.TANG,C.GROSHONG,L.RODGERS, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 3EPR 1 REMARK REVDAT 5 10-FEB-21 3EPR 1 AUTHOR JRNL REMARK REVDAT 4 25-OCT-17 3EPR 1 REMARK REVDAT 3 13-JUL-11 3EPR 1 VERSN REVDAT 2 24-FEB-09 3EPR 1 VERSN REVDAT 1 04-NOV-08 3EPR 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,M.DICKEY,B.K.TANG,C.GROSHONG,L.RODGERS, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE HAD SUPERFAMILY HYDROLASE FROM JRNL TITL 2 STREPTOCOCCUS AGALACTIAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 48286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2443 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3069 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.60000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.282 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2051 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2796 ; 1.561 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 5.939 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;36.850 ;25.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 343 ;11.792 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1539 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 979 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1451 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.128 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 0.919 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2102 ; 1.565 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 778 ; 2.428 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 693 ; 3.801 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-08; 15-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X29A; X12C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 0.979 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : 0.55300 REMARK 200 FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD; SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 25% PEG3350, REMARK 280 0.2 M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.18350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.47700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.80200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.18350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.47700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.80200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.18350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.47700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.80200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.18350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.47700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.80200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 82.36700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 82.95400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 82.36700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 82.95400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 82.36700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 261 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 -78.30 -106.85 REMARK 500 THR A 15 -54.09 -123.80 REMARK 500 LYS A 88 50.41 -91.79 REMARK 500 THR A 227 41.19 -90.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 266 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 ASP A 13 O 132.6 REMARK 620 3 ASP A 207 OD1 93.9 90.8 REMARK 620 4 HOH A 439 O 89.7 83.5 174.3 REMARK 620 5 HOH A 499 O 122.4 104.8 88.8 93.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9646A RELATED DB: TARGETDB DBREF 3EPR A 1 258 UNP Q8E044 Q8E044_STRA5 1 256 SEQADV 3EPR SER A 2 UNP Q8E044 EXPRESSION TAG SEQADV 3EPR LEU A 3 UNP Q8E044 EXPRESSION TAG SEQADV 3EPR HIS A 259 UNP Q8E044 EXPRESSION TAG SEQADV 3EPR HIS A 260 UNP Q8E044 EXPRESSION TAG SEQADV 3EPR HIS A 261 UNP Q8E044 EXPRESSION TAG SEQADV 3EPR HIS A 262 UNP Q8E044 EXPRESSION TAG SEQADV 3EPR HIS A 263 UNP Q8E044 EXPRESSION TAG SEQADV 3EPR HIS A 264 UNP Q8E044 EXPRESSION TAG SEQRES 1 A 264 MET SER LEU ALA TYR LYS GLY TYR LEU ILE ASP LEU ASP SEQRES 2 A 264 GLY THR ILE TYR LYS GLY LYS SER ARG ILE PRO ALA GLY SEQRES 3 A 264 GLU ARG PHE ILE GLU ARG LEU GLN GLU LYS GLY ILE PRO SEQRES 4 A 264 TYR MET LEU VAL THR ASN ASN THR THR ARG THR PRO GLU SEQRES 5 A 264 SER VAL GLN GLU MET LEU ARG GLY PHE ASN VAL GLU THR SEQRES 6 A 264 PRO LEU GLU THR ILE TYR THR ALA THR MET ALA THR VAL SEQRES 7 A 264 ASP TYR MET ASN ASP MET ASN ARG GLY LYS THR ALA TYR SEQRES 8 A 264 VAL ILE GLY GLU GLU GLY LEU LYS LYS ALA ILE ALA ASP SEQRES 9 A 264 ALA GLY TYR VAL GLU ASP THR LYS ASN PRO ALA TYR VAL SEQRES 10 A 264 VAL VAL GLY LEU ASP TRP ASN VAL THR TYR ASP LYS LEU SEQRES 11 A 264 ALA THR ALA THR LEU ALA ILE GLN ASN GLY ALA LEU PHE SEQRES 12 A 264 ILE GLY THR ASN PRO ASP LEU ASN ILE PRO THR GLU ARG SEQRES 13 A 264 GLY LEU LEU PRO GLY ALA GLY SER LEU ASN ALA LEU LEU SEQRES 14 A 264 GLU ALA ALA THR ARG ILE LYS PRO VAL PHE ILE GLY LYS SEQRES 15 A 264 PRO ASN ALA ILE ILE MET ASN LYS ALA LEU GLU ILE LEU SEQRES 16 A 264 ASN ILE PRO ARG ASN GLN ALA VAL MET VAL GLY ASP ASN SEQRES 17 A 264 TYR LEU THR ASP ILE MET ALA GLY ILE ASN ASN ASP ILE SEQRES 18 A 264 ASP THR LEU LEU VAL THR THR GLY PHE THR THR VAL GLU SEQRES 19 A 264 GLU VAL PRO ASP LEU PRO ILE GLN PRO SER TYR VAL LEU SEQRES 20 A 264 ALA SER LEU ASP GLU TRP THR PHE ASN GLU GLY HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS HET GOL A 265 6 HET NA A 266 1 HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 NA NA 1+ FORMUL 4 HOH *282(H2 O) HELIX 1 1 ILE A 23 GLY A 37 1 15 HELIX 2 2 THR A 50 GLY A 60 1 11 HELIX 3 3 PRO A 66 GLU A 68 5 3 HELIX 4 4 ALA A 73 ASN A 85 1 13 HELIX 5 5 GLU A 95 ALA A 105 1 11 HELIX 6 6 THR A 126 ASN A 139 1 14 HELIX 7 7 GLY A 161 ARG A 174 1 14 HELIX 8 8 ASN A 184 ASN A 196 1 13 HELIX 9 9 PRO A 198 ASN A 200 5 3 HELIX 10 10 THR A 211 ASP A 220 1 10 HELIX 11 11 THR A 232 LEU A 239 5 8 HELIX 12 12 SER A 249 TRP A 253 5 5 SHEET 1 A 6 ILE A 70 THR A 72 0 SHEET 2 A 6 TYR A 40 THR A 44 1 N LEU A 42 O TYR A 71 SHEET 3 A 6 GLY A 7 ILE A 10 1 N ILE A 10 O MET A 41 SHEET 4 A 6 ALA A 202 GLY A 206 1 O VAL A 205 N LEU A 9 SHEET 5 A 6 ASP A 222 VAL A 226 1 O LEU A 224 N MET A 204 SHEET 6 A 6 TYR A 245 LEU A 247 1 O TYR A 245 N LEU A 225 SHEET 1 B 2 TYR A 17 LYS A 18 0 SHEET 2 B 2 SER A 21 ARG A 22 -1 O SER A 21 N LYS A 18 SHEET 1 C 5 VAL A 108 GLU A 109 0 SHEET 2 C 5 THR A 89 ILE A 93 1 N ALA A 90 O VAL A 108 SHEET 3 C 5 TYR A 116 VAL A 119 1 O VAL A 118 N ILE A 93 SHEET 4 C 5 LEU A 142 GLY A 145 1 O ILE A 144 N VAL A 117 SHEET 5 C 5 VAL A 178 PHE A 179 1 O VAL A 178 N PHE A 143 SHEET 1 D 2 ASN A 151 THR A 154 0 SHEET 2 D 2 GLY A 157 PRO A 160 -1 O LEU A 159 N ILE A 152 LINK OD2 ASP A 11 NA NA A 266 1555 1555 2.39 LINK O ASP A 13 NA NA A 266 1555 1555 2.21 LINK OD1 ASP A 207 NA NA A 266 1555 1555 2.29 LINK NA NA A 266 O HOH A 439 1555 1555 2.33 LINK NA NA A 266 O HOH A 499 1555 1555 2.26 CISPEP 1 LYS A 182 PRO A 183 0 5.47 SITE 1 AC1 9 ASP A 149 LEU A 150 ASN A 151 ASN A 208 SITE 2 AC1 9 THR A 211 PHE A 230 HOH A 339 HOH A 475 SITE 3 AC1 9 HOH A 494 SITE 1 AC2 5 ASP A 11 ASP A 13 ASP A 207 HOH A 439 SITE 2 AC2 5 HOH A 499 CRYST1 82.367 82.954 99.604 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010040 0.00000