HEADER METAL BINDING PROTEIN 30-SEP-08 3EPV TITLE X-RAY STRUCTURE OF THE METAL-SENSOR CNRX IN BOTH THE APO- AND COPPER- TITLE 2 BOUND FORMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICKEL AND COBALT RESISTANCE PROTEIN CNRR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: METAL-SENSOR DOMAIN; COMPND 5 SYNONYM: CNRX; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA METALLIDURANS; SOURCE 3 ORGANISM_TAXID: 266264; SOURCE 4 STRAIN: CH34; SOURCE 5 GENE: CNRR, CNRX, RME0087, RMET_6206; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS ALL ALPHA HELIX, COBALT, NICKEL, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.POMPIDOR,A.P.MAILLARD,E.GIRARD,S.GAMBARELLI,R.KAHN,J.COVES REVDAT 3 13-JUL-11 3EPV 1 VERSN REVDAT 2 24-FEB-09 3EPV 1 VERSN REVDAT 1 25-NOV-08 3EPV 0 JRNL AUTH G.POMPIDOR,A.P.MAILLARD,E.GIRARD,S.GAMBARELLI,R.KAHN,J.COVES JRNL TITL X-RAY STRUCTURE OF THE METAL-SENSOR CNRX IN BOTH THE APO- JRNL TITL 2 AND COPPER-BOUND FORMS. JRNL REF FEBS LETT. 2008 JRNL REFN ISSN 0014-5793 JRNL PMID 18992246 JRNL DOI 10.1016/J.FEBSLET.2008.10.042 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 43242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2294 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3460 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : 2.24000 REMARK 3 B33 (A**2) : -2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3626 ; 0.032 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2572 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4894 ; 2.393 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6204 ; 1.262 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 8.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;34.068 ;22.921 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 658 ;16.997 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;23.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4094 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 753 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 980 ; 0.248 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2799 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1692 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1960 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 321 ; 0.227 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 104 ; 0.329 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.303 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2751 ; 2.037 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 871 ; 0.538 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3542 ; 2.173 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1504 ; 4.213 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ; 5.900 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-08. REMARK 100 THE RCSB ID CODE IS RCSB049626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97961 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45563 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.742 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : 0.03700 REMARK 200 FOR THE DATA SET : 14.1520 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : 0.26300 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 2000 MME, 10% GLYCEROL, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.94500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 116 REMARK 465 SER C 117 REMARK 465 GLN C 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA D 35 N ALA D 37 1.97 REMARK 500 OE2 GLU B 30 O HOH B 306 2.01 REMARK 500 ND1 HIS D 89 O HOH D 159 2.01 REMARK 500 O HOH B 305 O HOH B 318 2.03 REMARK 500 O HOH B 205 O HOH B 316 2.03 REMARK 500 O HOH D 122 O HOH D 195 2.03 REMARK 500 O LEU C 15 O HOH C 192 2.09 REMARK 500 OD1 ASP B 111 O HOH B 249 2.12 REMARK 500 O HOH C 238 O HOH D 122 2.13 REMARK 500 O HOH A 143 O HOH A 221 2.14 REMARK 500 O HOH A 134 O HOH A 200 2.16 REMARK 500 OE1 GLU A 42 O HOH A 228 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 128 O HOH C 235 2555 1.88 REMARK 500 O HOH B 209 O HOH C 241 2555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 67 CB GLU A 67 CG 0.122 REMARK 500 GLU A 67 CG GLU A 67 CD 0.166 REMARK 500 GLU A 67 CD GLU A 67 OE2 0.105 REMARK 500 GLU B 33 CG GLU B 33 CD 0.092 REMARK 500 GLU B 42 CB GLU B 42 CG -0.120 REMARK 500 ALA B 78 CA ALA B 78 CB 0.132 REMARK 500 GLU B 92 CD GLU B 92 OE1 0.066 REMARK 500 GLU C 27 CD GLU C 27 OE2 -0.079 REMARK 500 GLU C 42 CB GLU C 42 CG 0.120 REMARK 500 GLU C 100 CG GLU C 100 CD 0.098 REMARK 500 GLU D 67 CB GLU D 67 CG 0.132 REMARK 500 ALA D 104 CA ALA D 104 CB -0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 81 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LEU B 15 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 ARG B 46 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 46 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 LEU B 82 CB - CG - CD1 ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG B 84 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG C 46 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 46 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP C 56 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG C 77 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 77 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 84 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 PRO D 20 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO D 20 C - N - CD ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG D 46 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG D 46 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP D 56 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 16 -87.41 33.70 REMARK 500 ALA B 18 -34.72 -133.07 REMARK 500 ASN C 61 107.64 -163.06 REMARK 500 LEU D 21 97.71 60.77 REMARK 500 ALA D 23 -36.61 -36.99 REMARK 500 GLU D 33 33.25 -83.11 REMARK 500 ASP D 34 12.64 -149.94 REMARK 500 ALA D 35 173.54 50.41 REMARK 500 PHE D 36 -63.11 3.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 10 LEU A 11 -144.25 REMARK 500 LEU B 15 HIS B 16 81.90 REMARK 500 GLU B 17 ALA B 18 -64.73 REMARK 500 VAL D 19 PRO D 20 140.72 REMARK 500 LEU D 21 ASP D 22 143.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU B 15 24.8 L L OUTSIDE RANGE REMARK 500 HIS B 16 20.5 L L OUTSIDE RANGE REMARK 500 ASP D 34 22.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 289 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH C 197 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH C 226 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH C 228 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH D 191 DISTANCE = 5.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 1 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS A 16 NE2 89.7 REMARK 620 3 GLU A 33 OE1 127.2 94.9 REMARK 620 4 HIS A 89 NE2 102.5 167.7 76.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 3 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 12 NE2 REMARK 620 2 HIS B 16 NE2 82.8 REMARK 620 3 GLU B 33 OE1 101.4 85.9 REMARK 620 4 HIS B 89 NE2 99.6 176.8 95.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 2 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 12 NE2 REMARK 620 2 GLU C 33 OE1 111.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 2 DBREF 3EPV A 10 118 UNP P37975 CNRR_RALME 40 148 DBREF 3EPV B 10 118 UNP P37975 CNRR_RALME 40 148 DBREF 3EPV C 10 118 UNP P37975 CNRR_RALME 40 148 DBREF 3EPV D 10 118 UNP P37975 CNRR_RALME 40 148 SEQRES 1 A 109 ASP LEU HIS GLU ILE LEU HIS GLU ALA VAL PRO LEU ASP SEQRES 2 A 109 ALA ASN GLU ARG GLU ILE LEU GLU LEU LYS GLU ASP ALA SEQRES 3 A 109 PHE ALA GLN ARG ARG ARG GLU ILE GLU THR ARG LEU ARG SEQRES 4 A 109 ALA ALA ASN GLY LYS LEU ALA ASP ALA ILE ALA LYS ASN SEQRES 5 A 109 PRO ALA TRP SER PRO GLU VAL GLU ALA ALA THR GLN GLU SEQRES 6 A 109 VAL GLU ARG ALA ALA GLY ASP LEU GLN ARG ALA THR LEU SEQRES 7 A 109 VAL HIS VAL PHE GLU MSE ARG ALA GLY LEU LYS PRO GLU SEQRES 8 A 109 HIS ARG PRO ALA TYR ASP ARG VAL LEU ILE ASP ALA LEU SEQRES 9 A 109 ARG ARG GLY SER GLN SEQRES 1 B 109 ASP LEU HIS GLU ILE LEU HIS GLU ALA VAL PRO LEU ASP SEQRES 2 B 109 ALA ASN GLU ARG GLU ILE LEU GLU LEU LYS GLU ASP ALA SEQRES 3 B 109 PHE ALA GLN ARG ARG ARG GLU ILE GLU THR ARG LEU ARG SEQRES 4 B 109 ALA ALA ASN GLY LYS LEU ALA ASP ALA ILE ALA LYS ASN SEQRES 5 B 109 PRO ALA TRP SER PRO GLU VAL GLU ALA ALA THR GLN GLU SEQRES 6 B 109 VAL GLU ARG ALA ALA GLY ASP LEU GLN ARG ALA THR LEU SEQRES 7 B 109 VAL HIS VAL PHE GLU MSE ARG ALA GLY LEU LYS PRO GLU SEQRES 8 B 109 HIS ARG PRO ALA TYR ASP ARG VAL LEU ILE ASP ALA LEU SEQRES 9 B 109 ARG ARG GLY SER GLN SEQRES 1 C 109 ASP LEU HIS GLU ILE LEU HIS GLU ALA VAL PRO LEU ASP SEQRES 2 C 109 ALA ASN GLU ARG GLU ILE LEU GLU LEU LYS GLU ASP ALA SEQRES 3 C 109 PHE ALA GLN ARG ARG ARG GLU ILE GLU THR ARG LEU ARG SEQRES 4 C 109 ALA ALA ASN GLY LYS LEU ALA ASP ALA ILE ALA LYS ASN SEQRES 5 C 109 PRO ALA TRP SER PRO GLU VAL GLU ALA ALA THR GLN GLU SEQRES 6 C 109 VAL GLU ARG ALA ALA GLY ASP LEU GLN ARG ALA THR LEU SEQRES 7 C 109 VAL HIS VAL PHE GLU MSE ARG ALA GLY LEU LYS PRO GLU SEQRES 8 C 109 HIS ARG PRO ALA TYR ASP ARG VAL LEU ILE ASP ALA LEU SEQRES 9 C 109 ARG ARG GLY SER GLN SEQRES 1 D 109 ASP LEU HIS GLU ILE LEU HIS GLU ALA VAL PRO LEU ASP SEQRES 2 D 109 ALA ASN GLU ARG GLU ILE LEU GLU LEU LYS GLU ASP ALA SEQRES 3 D 109 PHE ALA GLN ARG ARG ARG GLU ILE GLU THR ARG LEU ARG SEQRES 4 D 109 ALA ALA ASN GLY LYS LEU ALA ASP ALA ILE ALA LYS ASN SEQRES 5 D 109 PRO ALA TRP SER PRO GLU VAL GLU ALA ALA THR GLN GLU SEQRES 6 D 109 VAL GLU ARG ALA ALA GLY ASP LEU GLN ARG ALA THR LEU SEQRES 7 D 109 VAL HIS VAL PHE GLU MSE ARG ALA GLY LEU LYS PRO GLU SEQRES 8 D 109 HIS ARG PRO ALA TYR ASP ARG VAL LEU ILE ASP ALA LEU SEQRES 9 D 109 ARG ARG GLY SER GLN MODRES 3EPV MSE A 93 MET SELENOMETHIONINE MODRES 3EPV MSE B 93 MET SELENOMETHIONINE MODRES 3EPV MSE C 93 MET SELENOMETHIONINE MODRES 3EPV MSE D 93 MET SELENOMETHIONINE HET MSE A 93 13 HET MSE B 93 13 HET MSE C 93 18 HET MSE D 93 13 HET CU A 1 1 HET CU B 3 1 HET CU C 2 1 HETNAM MSE SELENOMETHIONINE HETNAM CU COPPER (II) ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 CU 3(CU 2+) FORMUL 8 HOH *441(H2 O) HELIX 1 1 ASP A 10 VAL A 19 1 10 HELIX 2 2 ASP A 22 ASN A 61 1 40 HELIX 3 3 SER A 65 GLY A 96 1 32 HELIX 4 4 LEU A 97 GLU A 100 5 4 HELIX 5 5 HIS A 101 GLY A 116 1 16 HELIX 6 6 ASP B 10 GLU B 17 1 8 HELIX 7 7 ASP B 22 ASN B 61 1 40 HELIX 8 8 SER B 65 GLY B 96 1 32 HELIX 9 9 LEU B 97 GLU B 100 5 4 HELIX 10 10 HIS B 101 GLY B 116 1 16 HELIX 11 11 ASP C 10 VAL C 19 1 10 HELIX 12 12 ASP C 22 ASN C 61 1 40 HELIX 13 13 SER C 65 GLY C 96 1 32 HELIX 14 14 LEU C 97 GLU C 100 5 4 HELIX 15 15 HIS C 101 ARG C 115 1 15 HELIX 16 16 ASP D 10 VAL D 19 1 10 HELIX 17 17 ASP D 22 GLU D 30 1 9 HELIX 18 18 PHE D 36 ASN D 61 1 26 HELIX 19 19 SER D 65 GLY D 96 1 32 HELIX 20 20 LEU D 97 GLU D 100 5 4 HELIX 21 21 HIS D 101 GLY D 116 1 16 LINK C GLU A 92 N MSE A 93 1555 1555 1.34 LINK C MSE A 93 N ARG A 94 1555 1555 1.32 LINK C GLU B 92 N MSE B 93 1555 1555 1.31 LINK C MSE B 93 N ARG B 94 1555 1555 1.33 LINK C GLU C 92 N MSE C 93 1555 1555 1.33 LINK C MSE C 93 N ARG C 94 1555 1555 1.31 LINK C GLU D 92 N MSE D 93 1555 1555 1.32 LINK C MSE D 93 N ARG D 94 1555 1555 1.30 LINK NE2 HIS A 12 CU CU A 1 1555 1555 2.09 LINK NE2 HIS A 16 CU CU A 1 1555 1555 2.12 LINK OE1 GLU A 33 CU CU A 1 1555 1555 1.92 LINK NE2 HIS A 89 CU CU A 1 1555 1555 2.23 LINK NE2AHIS B 12 CU CU B 3 1555 1555 2.05 LINK NE2 HIS B 16 CU CU B 3 1555 1555 2.12 LINK OE1 GLU B 33 CU CU B 3 1555 1555 1.95 LINK NE2 HIS B 89 CU CU B 3 1555 1555 2.15 LINK NE2 HIS C 12 CU CU C 2 1555 1555 2.00 LINK OE1 GLU C 33 CU CU C 2 1555 1555 1.94 CISPEP 1 PRO D 20 LEU D 21 0 20.90 CISPEP 2 ASP D 34 ALA D 35 0 15.34 SITE 1 AC1 5 HIS A 12 HIS A 16 GLU A 33 HIS A 89 SITE 2 AC1 5 MSE A 93 SITE 1 AC2 5 HIS B 12 HIS B 16 GLU B 33 HIS B 89 SITE 2 AC2 5 MSE B 93 SITE 1 AC3 5 HIS C 12 HIS C 16 GLU C 33 HIS C 89 SITE 2 AC3 5 MSE C 93 CRYST1 31.940 77.890 93.200 90.00 90.17 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031309 0.000000 0.000093 0.00000 SCALE2 0.000000 0.012839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010730 0.00000