HEADER UNKNOWN FUNCTION 14-OCT-08 3EW1 TITLE CRYSTAL STRUCTURE OF RHIZAVIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHIZAVIDIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM ETLI; SOURCE 3 ORGANISM_TAXID: 347834; SOURCE 4 STRAIN: CFN 42; SOURCE 5 GENE: RHE_PD00032; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HIGH AFFINITY, RHIZAVIDIN, BIOTIN, AVIDIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR O.LIVNAH,A.MEIR REVDAT 6 27-DEC-23 3EW1 1 REMARK REVDAT 5 13-JUL-11 3EW1 1 VERSN REVDAT 4 24-MAR-09 3EW1 1 JRNL REVDAT 3 17-FEB-09 3EW1 1 JRNL REVDAT 2 20-JAN-09 3EW1 1 350 REMARK REVDAT 1 23-DEC-08 3EW1 0 JRNL AUTH A.MEIR,S.H.HELPPOLAINEN,E.PODOLY,H.R.NORDLUND,V.P.HYTONEN, JRNL AUTH 2 J.A.MAATTA,M.WILCHEK,E.A.BAYER,M.S.KULOMAA,O.LIVNAH JRNL TITL CRYSTAL STRUCTURE OF RHIZAVIDIN: INSIGHTS INTO THE ENIGMATIC JRNL TITL 2 HIGH-AFFINITY INTERACTION OF AN INNATE BIOTIN-BINDING JRNL TITL 3 PROTEIN DIMER. JRNL REF J.MOL.BIOL. V. 386 379 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19111749 JRNL DOI 10.1016/J.JMB.2008.11.061 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 99649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5320 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 343 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 714 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6513 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8930 ; 1.620 ; 1.891 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 875 ; 6.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 326 ;34.407 ;26.350 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 917 ;13.788 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.696 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 944 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5303 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2918 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4578 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 601 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 126 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4274 ; 1.577 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6755 ; 2.278 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2638 ; 3.241 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2175 ; 4.349 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6912 ; 1.755 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 714 ; 7.537 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6332 ; 6.945 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SYNCHROTRON OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99649 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.1M TRIS-HCL. 0.2M REMARK 280 MGCL2, 5MM DTT, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.91700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.42550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.91700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.42550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -48.87400 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 8 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 9 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 10 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 874 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 785 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 135 REMARK 465 PHE E 1 REMARK 465 ASP E 2 REMARK 465 ALA E 3 REMARK 465 SER E 4 REMARK 465 ASN E 5 REMARK 465 ASP E 135 REMARK 465 ASP F 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS F 134 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 894 O HOH B 897 2.10 REMARK 500 O HOH D 906 O HOH D 914 2.10 REMARK 500 O HOH F 911 O HOH F 912 2.14 REMARK 500 O ILE A 12 O HOH A 892 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 57 CA - CB - CG ANGL. DEV. = 23.6 DEGREES REMARK 500 LEU B 57 CB - CG - CD1 ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU C 57 CA - CB - CG ANGL. DEV. = 22.7 DEGREES REMARK 500 LEU C 57 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 LEU E 57 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 LEU F 57 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 -12.24 81.53 REMARK 500 TRP A 72 45.86 -93.56 REMARK 500 SER A 75 -9.80 77.07 REMARK 500 TRP B 72 45.45 -93.12 REMARK 500 SER B 75 -5.28 79.21 REMARK 500 LYS C 7 -60.50 -94.43 REMARK 500 SER C 14 -10.33 75.63 REMARK 500 TRP C 72 47.20 -87.81 REMARK 500 SER C 75 -7.41 78.15 REMARK 500 TRP D 72 46.10 -93.65 REMARK 500 SER D 75 -10.93 79.32 REMARK 500 ASN D 94 16.98 51.21 REMARK 500 TRP E 72 44.35 -93.91 REMARK 500 SER E 75 -14.21 81.40 REMARK 500 TRP F 72 47.29 -87.99 REMARK 500 SER F 75 -9.58 76.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EW2 RELATED DB: PDB DBREF 3EW1 A 1 135 UNP Q8KKW2 Q8KKW2_RHIEC 21 155 DBREF 3EW1 B 1 135 UNP Q8KKW2 Q8KKW2_RHIEC 21 155 DBREF 3EW1 C 1 135 UNP Q8KKW2 Q8KKW2_RHIEC 21 155 DBREF 3EW1 D 1 135 UNP Q8KKW2 Q8KKW2_RHIEC 21 155 DBREF 3EW1 E 1 135 UNP Q8KKW2 Q8KKW2_RHIEC 21 155 DBREF 3EW1 F 1 135 UNP Q8KKW2 Q8KKW2_RHIEC 21 155 SEQRES 1 A 135 PHE ASP ALA SER ASN PHE LYS ASP PHE SER SER ILE ALA SEQRES 2 A 135 SER ALA SER SER SER TRP GLN ASN GLN SER GLY SER THR SEQRES 3 A 135 MET ILE ILE GLN VAL ASP SER PHE GLY ASN VAL SER GLY SEQRES 4 A 135 GLN TYR VAL ASN ARG ALA GLN GLY THR GLY CYS GLN ASN SEQRES 5 A 135 SER PRO TYR PRO LEU THR GLY ARG VAL ASN GLY THR PHE SEQRES 6 A 135 ILE ALA PHE SER VAL GLY TRP ASN ASN SER THR GLU ASN SEQRES 7 A 135 CYS ASN SER ALA THR GLY TRP THR GLY TYR ALA GLN VAL SEQRES 8 A 135 ASN GLY ASN ASN THR GLU ILE VAL THR SER TRP ASN LEU SEQRES 9 A 135 ALA TYR GLU GLY GLY SER GLY PRO ALA ILE GLU GLN GLY SEQRES 10 A 135 GLN ASP THR PHE GLN TYR VAL PRO THR THR GLU ASN LYS SEQRES 11 A 135 SER LEU LEU LYS ASP SEQRES 1 B 135 PHE ASP ALA SER ASN PHE LYS ASP PHE SER SER ILE ALA SEQRES 2 B 135 SER ALA SER SER SER TRP GLN ASN GLN SER GLY SER THR SEQRES 3 B 135 MET ILE ILE GLN VAL ASP SER PHE GLY ASN VAL SER GLY SEQRES 4 B 135 GLN TYR VAL ASN ARG ALA GLN GLY THR GLY CYS GLN ASN SEQRES 5 B 135 SER PRO TYR PRO LEU THR GLY ARG VAL ASN GLY THR PHE SEQRES 6 B 135 ILE ALA PHE SER VAL GLY TRP ASN ASN SER THR GLU ASN SEQRES 7 B 135 CYS ASN SER ALA THR GLY TRP THR GLY TYR ALA GLN VAL SEQRES 8 B 135 ASN GLY ASN ASN THR GLU ILE VAL THR SER TRP ASN LEU SEQRES 9 B 135 ALA TYR GLU GLY GLY SER GLY PRO ALA ILE GLU GLN GLY SEQRES 10 B 135 GLN ASP THR PHE GLN TYR VAL PRO THR THR GLU ASN LYS SEQRES 11 B 135 SER LEU LEU LYS ASP SEQRES 1 C 135 PHE ASP ALA SER ASN PHE LYS ASP PHE SER SER ILE ALA SEQRES 2 C 135 SER ALA SER SER SER TRP GLN ASN GLN SER GLY SER THR SEQRES 3 C 135 MET ILE ILE GLN VAL ASP SER PHE GLY ASN VAL SER GLY SEQRES 4 C 135 GLN TYR VAL ASN ARG ALA GLN GLY THR GLY CYS GLN ASN SEQRES 5 C 135 SER PRO TYR PRO LEU THR GLY ARG VAL ASN GLY THR PHE SEQRES 6 C 135 ILE ALA PHE SER VAL GLY TRP ASN ASN SER THR GLU ASN SEQRES 7 C 135 CYS ASN SER ALA THR GLY TRP THR GLY TYR ALA GLN VAL SEQRES 8 C 135 ASN GLY ASN ASN THR GLU ILE VAL THR SER TRP ASN LEU SEQRES 9 C 135 ALA TYR GLU GLY GLY SER GLY PRO ALA ILE GLU GLN GLY SEQRES 10 C 135 GLN ASP THR PHE GLN TYR VAL PRO THR THR GLU ASN LYS SEQRES 11 C 135 SER LEU LEU LYS ASP SEQRES 1 D 135 PHE ASP ALA SER ASN PHE LYS ASP PHE SER SER ILE ALA SEQRES 2 D 135 SER ALA SER SER SER TRP GLN ASN GLN SER GLY SER THR SEQRES 3 D 135 MET ILE ILE GLN VAL ASP SER PHE GLY ASN VAL SER GLY SEQRES 4 D 135 GLN TYR VAL ASN ARG ALA GLN GLY THR GLY CYS GLN ASN SEQRES 5 D 135 SER PRO TYR PRO LEU THR GLY ARG VAL ASN GLY THR PHE SEQRES 6 D 135 ILE ALA PHE SER VAL GLY TRP ASN ASN SER THR GLU ASN SEQRES 7 D 135 CYS ASN SER ALA THR GLY TRP THR GLY TYR ALA GLN VAL SEQRES 8 D 135 ASN GLY ASN ASN THR GLU ILE VAL THR SER TRP ASN LEU SEQRES 9 D 135 ALA TYR GLU GLY GLY SER GLY PRO ALA ILE GLU GLN GLY SEQRES 10 D 135 GLN ASP THR PHE GLN TYR VAL PRO THR THR GLU ASN LYS SEQRES 11 D 135 SER LEU LEU LYS ASP SEQRES 1 E 135 PHE ASP ALA SER ASN PHE LYS ASP PHE SER SER ILE ALA SEQRES 2 E 135 SER ALA SER SER SER TRP GLN ASN GLN SER GLY SER THR SEQRES 3 E 135 MET ILE ILE GLN VAL ASP SER PHE GLY ASN VAL SER GLY SEQRES 4 E 135 GLN TYR VAL ASN ARG ALA GLN GLY THR GLY CYS GLN ASN SEQRES 5 E 135 SER PRO TYR PRO LEU THR GLY ARG VAL ASN GLY THR PHE SEQRES 6 E 135 ILE ALA PHE SER VAL GLY TRP ASN ASN SER THR GLU ASN SEQRES 7 E 135 CYS ASN SER ALA THR GLY TRP THR GLY TYR ALA GLN VAL SEQRES 8 E 135 ASN GLY ASN ASN THR GLU ILE VAL THR SER TRP ASN LEU SEQRES 9 E 135 ALA TYR GLU GLY GLY SER GLY PRO ALA ILE GLU GLN GLY SEQRES 10 E 135 GLN ASP THR PHE GLN TYR VAL PRO THR THR GLU ASN LYS SEQRES 11 E 135 SER LEU LEU LYS ASP SEQRES 1 F 135 PHE ASP ALA SER ASN PHE LYS ASP PHE SER SER ILE ALA SEQRES 2 F 135 SER ALA SER SER SER TRP GLN ASN GLN SER GLY SER THR SEQRES 3 F 135 MET ILE ILE GLN VAL ASP SER PHE GLY ASN VAL SER GLY SEQRES 4 F 135 GLN TYR VAL ASN ARG ALA GLN GLY THR GLY CYS GLN ASN SEQRES 5 F 135 SER PRO TYR PRO LEU THR GLY ARG VAL ASN GLY THR PHE SEQRES 6 F 135 ILE ALA PHE SER VAL GLY TRP ASN ASN SER THR GLU ASN SEQRES 7 F 135 CYS ASN SER ALA THR GLY TRP THR GLY TYR ALA GLN VAL SEQRES 8 F 135 ASN GLY ASN ASN THR GLU ILE VAL THR SER TRP ASN LEU SEQRES 9 F 135 ALA TYR GLU GLY GLY SER GLY PRO ALA ILE GLU GLN GLY SEQRES 10 F 135 GLN ASP THR PHE GLN TYR VAL PRO THR THR GLU ASN LYS SEQRES 11 F 135 SER LEU LEU LYS ASP FORMUL 7 HOH *714(H2 O) HELIX 1 1 ASP A 8 ILE A 12 5 5 HELIX 2 2 PHE B 1 LYS B 7 5 7 HELIX 3 3 ASP B 8 SER B 14 1 7 HELIX 4 4 ASP C 8 ALA C 13 5 6 HELIX 5 5 PHE D 1 LYS D 7 5 7 HELIX 6 6 ASP D 8 ALA D 13 1 6 HELIX 7 7 ASP E 8 ALA E 13 5 6 HELIX 8 8 ASP F 2 PHE F 6 5 5 HELIX 9 9 ASP F 8 ALA F 13 5 6 SHEET 1 A10 THR C 127 GLU C 128 0 SHEET 2 A10 GLU A 77 ASN A 92 1 N ASN A 78 O THR C 127 SHEET 3 A10 ASN A 95 GLU A 107 -1 O ASN A 95 N ASN A 92 SHEET 4 A10 PRO A 112 VAL A 124 -1 O GLU A 115 N LEU A 104 SHEET 5 A10 SER A 16 ASN A 21 -1 N GLN A 20 O GLN A 122 SHEET 6 A10 THR A 26 VAL A 31 -1 O ILE A 29 N SER A 17 SHEET 7 A10 ASN A 36 VAL A 42 -1 O VAL A 42 N THR A 26 SHEET 8 A10 PRO A 54 ASN A 62 -1 O TYR A 55 N TYR A 41 SHEET 9 A10 PHE A 65 ASN A 73 -1 O SER A 69 N THR A 58 SHEET 10 A10 GLU A 77 ASN A 92 -1 O CYS A 79 N TRP A 72 SHEET 1 B10 THR A 127 GLU A 128 0 SHEET 2 B10 GLU C 77 ASN C 92 1 O ASN C 78 N THR A 127 SHEET 3 B10 ASN C 95 GLU C 107 -1 O ASN C 95 N ASN C 92 SHEET 4 B10 PRO C 112 VAL C 124 -1 O PHE C 121 N ILE C 98 SHEET 5 B10 SER C 16 ASN C 21 -1 N GLN C 20 O GLN C 122 SHEET 6 B10 THR C 26 VAL C 31 -1 O ILE C 29 N SER C 17 SHEET 7 B10 ASN C 36 VAL C 42 -1 O SER C 38 N GLN C 30 SHEET 8 B10 PRO C 54 ASN C 62 -1 O TYR C 55 N TYR C 41 SHEET 9 B10 PHE C 65 ASN C 73 -1 O ALA C 67 N ARG C 60 SHEET 10 B10 GLU C 77 ASN C 92 -1 O TRP C 85 N PHE C 68 SHEET 1 C10 THR E 127 GLU E 128 0 SHEET 2 C10 GLU B 77 ASN B 92 1 N ASN B 78 O THR E 127 SHEET 3 C10 ASN B 95 GLY B 108 -1 O ALA B 105 N ALA B 82 SHEET 4 C10 GLY B 111 VAL B 124 -1 O GLU B 115 N LEU B 104 SHEET 5 C10 ALA B 15 ASN B 21 -1 N GLN B 20 O GLN B 122 SHEET 6 C10 THR B 26 VAL B 31 -1 O ILE B 29 N SER B 17 SHEET 7 C10 ASN B 36 VAL B 42 -1 O VAL B 42 N THR B 26 SHEET 8 C10 PRO B 54 ASN B 62 -1 O TYR B 55 N TYR B 41 SHEET 9 C10 PHE B 65 ASN B 73 -1 O SER B 69 N THR B 58 SHEET 10 C10 GLU B 77 ASN B 92 -1 O CYS B 79 N TRP B 72 SHEET 1 D10 THR B 127 GLU B 128 0 SHEET 2 D10 GLU E 77 ASN E 92 1 O ASN E 78 N THR B 127 SHEET 3 D10 ASN E 95 GLY E 108 -1 O GLU E 97 N GLN E 90 SHEET 4 D10 GLY E 111 VAL E 124 -1 O ALA E 113 N TYR E 106 SHEET 5 D10 ALA E 15 ASN E 21 -1 N GLN E 20 O GLN E 122 SHEET 6 D10 THR E 26 VAL E 31 -1 O ILE E 29 N SER E 17 SHEET 7 D10 ASN E 36 VAL E 42 -1 O VAL E 42 N THR E 26 SHEET 8 D10 PRO E 54 ASN E 62 -1 O TYR E 55 N TYR E 41 SHEET 9 D10 PHE E 65 ASN E 73 -1 O SER E 69 N THR E 58 SHEET 10 D10 GLU E 77 ASN E 92 -1 O CYS E 79 N TRP E 72 SHEET 1 E 9 ALA D 15 ASN D 21 0 SHEET 2 E 9 THR D 26 VAL D 31 -1 O ILE D 29 N SER D 17 SHEET 3 E 9 ASN D 36 VAL D 42 -1 O SER D 38 N GLN D 30 SHEET 4 E 9 PRO D 54 ASN D 62 -1 O GLY D 59 N VAL D 37 SHEET 5 E 9 PHE D 65 ASN D 73 -1 O PHE D 65 N ASN D 62 SHEET 6 E 9 ASN D 78 ASN D 92 -1 O CYS D 79 N TRP D 72 SHEET 7 E 9 ASN D 95 GLU D 107 -1 O GLU D 97 N GLN D 90 SHEET 8 E 9 PRO D 112 VAL D 124 -1 O GLY D 117 N TRP D 102 SHEET 9 E 9 ALA D 15 ASN D 21 -1 N GLN D 20 O GLN D 122 SHEET 1 F10 THR D 127 GLU D 128 0 SHEET 2 F10 GLU F 77 ASN F 92 1 O ASN F 78 N THR D 127 SHEET 3 F10 ASN F 95 GLU F 107 -1 O GLU F 97 N GLN F 90 SHEET 4 F10 PRO F 112 VAL F 124 -1 O GLU F 115 N LEU F 104 SHEET 5 F10 ALA F 15 GLN F 20 -1 N GLN F 20 O GLN F 122 SHEET 6 F10 THR F 26 VAL F 31 -1 O ILE F 29 N SER F 17 SHEET 7 F10 ASN F 36 VAL F 42 -1 O VAL F 42 N THR F 26 SHEET 8 F10 PRO F 54 ASN F 62 -1 O TYR F 55 N TYR F 41 SHEET 9 F10 PHE F 65 ASN F 73 -1 O PHE F 65 N ASN F 62 SHEET 10 F10 GLU F 77 ASN F 92 -1 O CYS F 79 N TRP F 72 SSBOND 1 CYS A 50 CYS A 79 1555 1555 2.11 SSBOND 2 CYS B 50 CYS B 79 1555 1555 2.10 SSBOND 3 CYS C 50 CYS C 79 1555 1555 2.11 SSBOND 4 CYS D 50 CYS D 79 1555 1555 2.08 SSBOND 5 CYS E 50 CYS E 79 1555 1555 2.10 SSBOND 6 CYS F 50 CYS F 79 1555 1555 2.14 CRYST1 115.834 116.851 48.874 90.00 90.00 90.00 P 21 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020461 0.00000