data_3EXL # _entry.id 3EXL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3EXL NDB PD1192 RCSB RCSB049893 WWPDB D_1000049893 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3EXJ _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EXL _pdbx_database_status.recvd_initial_deposition_date 2008-10-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Malecka, K.A.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a p53 core tetramer bound to DNA.' _citation.journal_abbrev Oncogene _citation.journal_volume 28 _citation.page_first 325 _citation.page_last 333 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 0950-9232 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18978813 _citation.pdbx_database_id_DOI 10.1038/onc.2008.400 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Malecka, K.A.' 1 primary 'Ho, W.C.' 2 primary 'Marmorstein, R.' 3 # _cell.entry_id 3EXL _cell.length_a 109.418 _cell.length_b 68.103 _cell.length_c 34.428 _cell.angle_alpha 90.00 _cell.angle_beta 104.18 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EXL _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'mouse p53 core domain' 22383.559 1 ? ? ? ? 2 polymer syn "5'-D(*DGP*DAP*DGP*DCP*DAP*DTP*DGP*DCP*DTP*DCP*DA)-3'" 3358.211 1 ? ? ? 'p53 consensus sequence' 3 polymer syn "5'-D(*DTP*DTP*DGP*DAP*DGP*DCP*DAP*DTP*DGP*DCP*DTP*DC)-3'" 3653.390 1 ? ? ? 'p53 consensus sequence' 4 non-polymer syn 'CITRATE ANION' 189.100 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 6 water nat water 18.015 161 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPH HERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLE DSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEVL ; ;SQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPH HERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLE DSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEVL ; A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DC)(DA)(DT)(DG)(DC)(DT)(DC)(DA)' GAGCATGCTCA C ? 3 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DA)(DG)(DC)(DA)(DT)(DG)(DC)(DT)(DC)' TTGAGCATGCTC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLN n 1 3 LYS n 1 4 THR n 1 5 TYR n 1 6 GLN n 1 7 GLY n 1 8 ASN n 1 9 TYR n 1 10 GLY n 1 11 PHE n 1 12 HIS n 1 13 LEU n 1 14 GLY n 1 15 PHE n 1 16 LEU n 1 17 GLN n 1 18 SER n 1 19 GLY n 1 20 THR n 1 21 ALA n 1 22 LYS n 1 23 SER n 1 24 VAL n 1 25 MET n 1 26 CYS n 1 27 THR n 1 28 TYR n 1 29 SER n 1 30 PRO n 1 31 PRO n 1 32 LEU n 1 33 ASN n 1 34 LYS n 1 35 LEU n 1 36 PHE n 1 37 CYS n 1 38 GLN n 1 39 LEU n 1 40 ALA n 1 41 LYS n 1 42 THR n 1 43 CYS n 1 44 PRO n 1 45 VAL n 1 46 GLN n 1 47 LEU n 1 48 TRP n 1 49 VAL n 1 50 SER n 1 51 ALA n 1 52 THR n 1 53 PRO n 1 54 PRO n 1 55 ALA n 1 56 GLY n 1 57 SER n 1 58 ARG n 1 59 VAL n 1 60 ARG n 1 61 ALA n 1 62 MET n 1 63 ALA n 1 64 ILE n 1 65 TYR n 1 66 LYS n 1 67 LYS n 1 68 SER n 1 69 GLN n 1 70 HIS n 1 71 MET n 1 72 THR n 1 73 GLU n 1 74 VAL n 1 75 VAL n 1 76 ARG n 1 77 ARG n 1 78 CYS n 1 79 PRO n 1 80 HIS n 1 81 HIS n 1 82 GLU n 1 83 ARG n 1 84 CYS n 1 85 SER n 1 86 ASP n 1 87 GLY n 1 88 ASP n 1 89 GLY n 1 90 LEU n 1 91 ALA n 1 92 PRO n 1 93 PRO n 1 94 GLN n 1 95 HIS n 1 96 LEU n 1 97 ILE n 1 98 ARG n 1 99 VAL n 1 100 GLU n 1 101 GLY n 1 102 ASN n 1 103 LEU n 1 104 TYR n 1 105 PRO n 1 106 GLU n 1 107 TYR n 1 108 LEU n 1 109 GLU n 1 110 ASP n 1 111 ARG n 1 112 GLN n 1 113 THR n 1 114 PHE n 1 115 ARG n 1 116 HIS n 1 117 SER n 1 118 VAL n 1 119 VAL n 1 120 VAL n 1 121 PRO n 1 122 TYR n 1 123 GLU n 1 124 PRO n 1 125 PRO n 1 126 GLU n 1 127 ALA n 1 128 GLY n 1 129 SER n 1 130 GLU n 1 131 TYR n 1 132 THR n 1 133 THR n 1 134 ILE n 1 135 HIS n 1 136 TYR n 1 137 LYS n 1 138 TYR n 1 139 MET n 1 140 CYS n 1 141 ASN n 1 142 SER n 1 143 SER n 1 144 CYS n 1 145 MET n 1 146 GLY n 1 147 GLY n 1 148 MET n 1 149 ASN n 1 150 ARG n 1 151 ARG n 1 152 PRO n 1 153 ILE n 1 154 LEU n 1 155 THR n 1 156 ILE n 1 157 ILE n 1 158 THR n 1 159 LEU n 1 160 GLU n 1 161 ASP n 1 162 SER n 1 163 SER n 1 164 GLY n 1 165 ASN n 1 166 LEU n 1 167 LEU n 1 168 GLY n 1 169 ARG n 1 170 ASP n 1 171 SER n 1 172 PHE n 1 173 GLU n 1 174 VAL n 1 175 ARG n 1 176 VAL n 1 177 CYS n 1 178 ALA n 1 179 CYS n 1 180 PRO n 1 181 GLY n 1 182 ARG n 1 183 ASP n 1 184 ARG n 1 185 ARG n 1 186 THR n 1 187 GLU n 1 188 GLU n 1 189 GLU n 1 190 ASN n 1 191 PHE n 1 192 ARG n 1 193 LYS n 1 194 LYS n 1 195 GLU n 1 196 VAL n 1 197 LEU n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DC n 2 5 DA n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DT n 2 10 DC n 2 11 DA n 3 1 DT n 3 2 DT n 3 3 DG n 3 4 DA n 3 5 DG n 3 6 DC n 3 7 DA n 3 8 DT n 3 9 DG n 3 10 DC n 3 11 DT n 3 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP P53_MOUSE P02340 1 ;SQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPH HERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLE DSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEVL ; 93 ? 2 PDB 3EXL 3EXL 2 GAGCATGCTCA 13 ? 3 PDB 3EXL 3EXL 3 TTGAGCATGCTC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EXL A 1 ? 197 ? P02340 93 ? 289 ? 96 292 2 2 3EXL C 1 ? 11 ? 3EXL 13 ? 23 ? 13 23 3 3 3EXL D 1 ? 12 ? 3EXL 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FLC non-polymer . 'CITRATE ANION' ? 'C6 H5 O7 -3' 189.100 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3EXL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '200 mM lithium citrate, 20% PEG 3350, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Lithium Citrate' ? ? ? 1 2 1 'PEG 3350' ? ? ? 1 3 2 'Lithium Citrate' ? ? ? 1 4 2 'PEG 3350' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2008-04-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3EXL _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 57.354 _reflns.d_resolution_high 2.2 _reflns.number_obs 12509 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.100 _reflns.pdbx_netI_over_sigmaI 14.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.277 _reflns_shell.meanI_over_sigI_obs 5.6 _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3EXL _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 57.354 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.000 _refine.ls_number_reflns_obs 12145 _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.253 _refine.ls_percent_reflns_R_free 9.900 _refine.ls_number_reflns_R_free 1246 _refine.ls_number_reflns_R_work 10899 _refine.B_iso_mean 33.457 _refine.solvent_model_param_bsol 43.798 _refine.aniso_B[1][1] 17.816 _refine.aniso_B[2][2] -1.230 _refine.aniso_B[3][3] -16.586 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -5.122 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.B_iso_max 89.05 _refine.B_iso_min 14.78 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.details ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1517 _refine_hist.pdbx_number_atoms_nucleic_acid 205 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 1897 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 57.354 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_mcbond_it ? 1.283 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.142 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.022 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.055 2.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.2 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 5 flc_xplor_par.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3EXL _struct.title 'Crystal Structure of a p53 Core Tetramer Bound to DNA' _struct.pdbx_descriptor 'mouse p53 core domain/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EXL _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;protein-DNA complex, Acetylation, Activator, Anti-oncogene, Apoptosis, Cell cycle, Covalent protein-RNA linkage, Cytoplasm, Disease mutation, DNA-binding, Endoplasmic reticulum, Metal-binding, Methylation, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Ubl conjugation, Zinc, TRANSCRIPTION-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 6 ? GLY A 10 ? GLN A 101 GLY A 105 5 ? 5 HELX_P HELX_P2 2 ALA A 21 ? VAL A 24 ? ALA A 116 VAL A 119 5 ? 4 HELX_P HELX_P3 3 CYS A 179 ? LYS A 193 ? CYS A 274 LYS A 288 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 78 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 173 A ZN 1 1_555 ? ? ? ? ? ? ? 2.343 ? metalc2 metalc ? ? A HIS 81 ND1 ? ? ? 1_555 E ZN . ZN ? ? A HIS 176 A ZN 1 1_555 ? ? ? ? ? ? ? 2.211 ? metalc3 metalc ? ? A CYS 140 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 235 A ZN 1 1_555 ? ? ? ? ? ? ? 2.470 ? metalc4 metalc ? ? A CYS 144 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 239 A ZN 1 1_555 ? ? ? ? ? ? ? 2.403 ? hydrog1 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 7 N1 ? ? C DT 18 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 7 N6 ? ? C DT 18 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 6 N3 ? ? C DG 19 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? C DG 19 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 6 N4 ? ? C DG 19 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 5 N1 ? ? C DC 20 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 5 O6 ? ? C DC 20 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 5 N2 ? ? C DC 20 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? C DT 21 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? C DT 21 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 3 N1 ? ? C DC 22 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 3 O6 ? ? C DC 22 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 3 N2 ? ? C DC 22 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 12 ? PHE A 15 ? HIS A 107 PHE A 110 A 2 CYS A 43 ? TRP A 48 ? CYS A 138 TRP A 143 A 3 THR A 132 ? TYR A 138 ? THR A 227 TYR A 233 A 4 ILE A 97 ? GLU A 100 ? ILE A 192 GLU A 195 B 1 CYS A 26 ? SER A 29 ? CYS A 121 SER A 124 B 2 LYS A 34 ? CYS A 37 ? LYS A 129 CYS A 132 B 3 LEU A 166 ? VAL A 176 ? LEU A 261 VAL A 271 B 4 ILE A 153 ? GLU A 160 ? ILE A 248 GLU A 255 B 5 ARG A 58 ? TYR A 65 ? ARG A 153 TYR A 160 B 6 HIS A 116 ? PRO A 121 ? HIS A 211 PRO A 216 B 7 GLU A 106 ? GLU A 109 ? GLU A 201 GLU A 204 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 14 ? N GLY A 109 O GLN A 46 ? O GLN A 141 A 2 3 N CYS A 43 ? N CYS A 138 O TYR A 136 ? O TYR A 231 A 3 4 O HIS A 135 ? O HIS A 230 N GLU A 100 ? N GLU A 195 B 1 2 N SER A 29 ? N SER A 124 O LYS A 34 ? O LYS A 129 B 2 3 N LEU A 35 ? N LEU A 130 O GLU A 173 ? O GLU A 268 B 3 4 O LEU A 167 ? O LEU A 262 N LEU A 159 ? N LEU A 254 B 4 5 O ILE A 156 ? O ILE A 251 N MET A 62 ? N MET A 157 B 5 6 N VAL A 59 ? N VAL A 154 O VAL A 120 ? O VAL A 215 B 6 7 O SER A 117 ? O SER A 212 N LEU A 108 ? N LEU A 203 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE FLC A 585' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 LEU A 16 ? LEU A 111 . ? 1_555 ? 2 AC1 11 THR A 20 ? THR A 115 . ? 1_555 ? 3 AC1 11 LYS A 22 ? LYS A 117 . ? 1_555 ? 4 AC1 11 PRO A 44 ? PRO A 139 . ? 1_555 ? 5 AC1 11 LYS A 67 ? LYS A 162 . ? 1_556 ? 6 AC1 11 SER A 68 ? SER A 163 . ? 1_556 ? 7 AC1 11 HIS A 135 ? HIS A 230 . ? 1_555 ? 8 AC1 11 HOH F . ? HOH A 333 . ? 1_555 ? 9 AC1 11 HOH F . ? HOH A 353 . ? 1_555 ? 10 AC1 11 HOH F . ? HOH A 354 . ? 1_555 ? 11 AC1 11 HOH F . ? HOH A 357 . ? 1_555 ? 12 AC2 4 CYS A 78 ? CYS A 173 . ? 1_555 ? 13 AC2 4 HIS A 81 ? HIS A 176 . ? 1_555 ? 14 AC2 4 CYS A 140 ? CYS A 235 . ? 1_555 ? 15 AC2 4 CYS A 144 ? CYS A 239 . ? 1_555 ? # _database_PDB_matrix.entry_id 3EXL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3EXL _atom_sites.fract_transf_matrix[1][1] 0.009139 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002309 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014684 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029959 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 96 ? ? ? A . n A 1 2 GLN 2 97 97 GLN GLN A . n A 1 3 LYS 3 98 98 LYS LYS A . n A 1 4 THR 4 99 99 THR THR A . n A 1 5 TYR 5 100 100 TYR TYR A . n A 1 6 GLN 6 101 101 GLN GLN A . n A 1 7 GLY 7 102 102 GLY GLY A . n A 1 8 ASN 8 103 103 ASN ASN A . n A 1 9 TYR 9 104 104 TYR TYR A . n A 1 10 GLY 10 105 105 GLY GLY A . n A 1 11 PHE 11 106 106 PHE PHE A . n A 1 12 HIS 12 107 107 HIS HIS A . n A 1 13 LEU 13 108 108 LEU LEU A . n A 1 14 GLY 14 109 109 GLY GLY A . n A 1 15 PHE 15 110 110 PHE PHE A . n A 1 16 LEU 16 111 111 LEU LEU A . n A 1 17 GLN 17 112 112 GLN GLN A . n A 1 18 SER 18 113 113 SER SER A . n A 1 19 GLY 19 114 114 GLY GLY A . n A 1 20 THR 20 115 115 THR THR A . n A 1 21 ALA 21 116 116 ALA ALA A . n A 1 22 LYS 22 117 117 LYS LYS A . n A 1 23 SER 23 118 118 SER SER A . n A 1 24 VAL 24 119 119 VAL VAL A . n A 1 25 MET 25 120 120 MET MET A . n A 1 26 CYS 26 121 121 CYS CYS A . n A 1 27 THR 27 122 122 THR THR A . n A 1 28 TYR 28 123 123 TYR TYR A . n A 1 29 SER 29 124 124 SER SER A . n A 1 30 PRO 30 125 125 PRO PRO A . n A 1 31 PRO 31 126 126 PRO PRO A . n A 1 32 LEU 32 127 127 LEU LEU A . n A 1 33 ASN 33 128 128 ASN ASN A . n A 1 34 LYS 34 129 129 LYS LYS A . n A 1 35 LEU 35 130 130 LEU LEU A . n A 1 36 PHE 36 131 131 PHE PHE A . n A 1 37 CYS 37 132 132 CYS CYS A . n A 1 38 GLN 38 133 133 GLN GLN A . n A 1 39 LEU 39 134 134 LEU LEU A . n A 1 40 ALA 40 135 135 ALA ALA A . n A 1 41 LYS 41 136 136 LYS LYS A . n A 1 42 THR 42 137 137 THR THR A . n A 1 43 CYS 43 138 138 CYS CYS A . n A 1 44 PRO 44 139 139 PRO PRO A . n A 1 45 VAL 45 140 140 VAL VAL A . n A 1 46 GLN 46 141 141 GLN GLN A . n A 1 47 LEU 47 142 142 LEU LEU A . n A 1 48 TRP 48 143 143 TRP TRP A . n A 1 49 VAL 49 144 144 VAL VAL A . n A 1 50 SER 50 145 145 SER SER A . n A 1 51 ALA 51 146 146 ALA ALA A . n A 1 52 THR 52 147 147 THR THR A . n A 1 53 PRO 53 148 148 PRO PRO A . n A 1 54 PRO 54 149 149 PRO PRO A . n A 1 55 ALA 55 150 150 ALA ALA A . n A 1 56 GLY 56 151 151 GLY GLY A . n A 1 57 SER 57 152 152 SER SER A . n A 1 58 ARG 58 153 153 ARG ARG A . n A 1 59 VAL 59 154 154 VAL VAL A . n A 1 60 ARG 60 155 155 ARG ARG A . n A 1 61 ALA 61 156 156 ALA ALA A . n A 1 62 MET 62 157 157 MET MET A . n A 1 63 ALA 63 158 158 ALA ALA A . n A 1 64 ILE 64 159 159 ILE ILE A . n A 1 65 TYR 65 160 160 TYR TYR A . n A 1 66 LYS 66 161 161 LYS LYS A . n A 1 67 LYS 67 162 162 LYS LYS A . n A 1 68 SER 68 163 163 SER SER A . n A 1 69 GLN 69 164 164 GLN GLN A . n A 1 70 HIS 70 165 165 HIS HIS A . n A 1 71 MET 71 166 166 MET MET A . n A 1 72 THR 72 167 167 THR THR A . n A 1 73 GLU 73 168 168 GLU GLU A . n A 1 74 VAL 74 169 169 VAL VAL A . n A 1 75 VAL 75 170 170 VAL VAL A . n A 1 76 ARG 76 171 171 ARG ARG A . n A 1 77 ARG 77 172 172 ARG ARG A . n A 1 78 CYS 78 173 173 CYS CYS A . n A 1 79 PRO 79 174 174 PRO PRO A . n A 1 80 HIS 80 175 175 HIS HIS A . n A 1 81 HIS 81 176 176 HIS HIS A . n A 1 82 GLU 82 177 177 GLU GLU A . n A 1 83 ARG 83 178 178 ARG ARG A . n A 1 84 CYS 84 179 179 CYS CYS A . n A 1 85 SER 85 180 180 SER SER A . n A 1 86 ASP 86 181 181 ASP ASP A . n A 1 87 GLY 87 182 182 GLY GLY A . n A 1 88 ASP 88 183 183 ASP ASP A . n A 1 89 GLY 89 184 184 GLY GLY A . n A 1 90 LEU 90 185 185 LEU LEU A . n A 1 91 ALA 91 186 186 ALA ALA A . n A 1 92 PRO 92 187 187 PRO PRO A . n A 1 93 PRO 93 188 188 PRO PRO A . n A 1 94 GLN 94 189 189 GLN GLN A . n A 1 95 HIS 95 190 190 HIS HIS A . n A 1 96 LEU 96 191 191 LEU LEU A . n A 1 97 ILE 97 192 192 ILE ILE A . n A 1 98 ARG 98 193 193 ARG ARG A . n A 1 99 VAL 99 194 194 VAL VAL A . n A 1 100 GLU 100 195 195 GLU GLU A . n A 1 101 GLY 101 196 196 GLY GLY A . n A 1 102 ASN 102 197 197 ASN ASN A . n A 1 103 LEU 103 198 198 LEU LEU A . n A 1 104 TYR 104 199 199 TYR TYR A . n A 1 105 PRO 105 200 200 PRO PRO A . n A 1 106 GLU 106 201 201 GLU GLU A . n A 1 107 TYR 107 202 202 TYR TYR A . n A 1 108 LEU 108 203 203 LEU LEU A . n A 1 109 GLU 109 204 204 GLU GLU A . n A 1 110 ASP 110 205 205 ASP ASP A . n A 1 111 ARG 111 206 206 ARG ARG A . n A 1 112 GLN 112 207 207 GLN GLN A . n A 1 113 THR 113 208 208 THR THR A . n A 1 114 PHE 114 209 209 PHE PHE A . n A 1 115 ARG 115 210 210 ARG ARG A . n A 1 116 HIS 116 211 211 HIS HIS A . n A 1 117 SER 117 212 212 SER SER A . n A 1 118 VAL 118 213 213 VAL VAL A . n A 1 119 VAL 119 214 214 VAL VAL A . n A 1 120 VAL 120 215 215 VAL VAL A . n A 1 121 PRO 121 216 216 PRO PRO A . n A 1 122 TYR 122 217 217 TYR TYR A . n A 1 123 GLU 123 218 218 GLU GLU A . n A 1 124 PRO 124 219 219 PRO PRO A . n A 1 125 PRO 125 220 220 PRO PRO A . n A 1 126 GLU 126 221 221 GLU GLU A . n A 1 127 ALA 127 222 222 ALA ALA A . n A 1 128 GLY 128 223 223 GLY GLY A . n A 1 129 SER 129 224 224 SER SER A . n A 1 130 GLU 130 225 225 GLU GLU A . n A 1 131 TYR 131 226 226 TYR TYR A . n A 1 132 THR 132 227 227 THR THR A . n A 1 133 THR 133 228 228 THR THR A . n A 1 134 ILE 134 229 229 ILE ILE A . n A 1 135 HIS 135 230 230 HIS HIS A . n A 1 136 TYR 136 231 231 TYR TYR A . n A 1 137 LYS 137 232 232 LYS LYS A . n A 1 138 TYR 138 233 233 TYR TYR A . n A 1 139 MET 139 234 234 MET MET A . n A 1 140 CYS 140 235 235 CYS CYS A . n A 1 141 ASN 141 236 236 ASN ASN A . n A 1 142 SER 142 237 237 SER SER A . n A 1 143 SER 143 238 238 SER SER A . n A 1 144 CYS 144 239 239 CYS CYS A . n A 1 145 MET 145 240 240 MET MET A . n A 1 146 GLY 146 241 241 GLY GLY A . n A 1 147 GLY 147 242 242 GLY GLY A . n A 1 148 MET 148 243 243 MET MET A . n A 1 149 ASN 149 244 244 ASN ASN A . n A 1 150 ARG 150 245 245 ARG ARG A . n A 1 151 ARG 151 246 246 ARG ARG A . n A 1 152 PRO 152 247 247 PRO PRO A . n A 1 153 ILE 153 248 248 ILE ILE A . n A 1 154 LEU 154 249 249 LEU LEU A . n A 1 155 THR 155 250 250 THR THR A . n A 1 156 ILE 156 251 251 ILE ILE A . n A 1 157 ILE 157 252 252 ILE ILE A . n A 1 158 THR 158 253 253 THR THR A . n A 1 159 LEU 159 254 254 LEU LEU A . n A 1 160 GLU 160 255 255 GLU GLU A . n A 1 161 ASP 161 256 256 ASP ASP A . n A 1 162 SER 162 257 257 SER SER A . n A 1 163 SER 163 258 258 SER SER A . n A 1 164 GLY 164 259 259 GLY GLY A . n A 1 165 ASN 165 260 260 ASN ASN A . n A 1 166 LEU 166 261 261 LEU LEU A . n A 1 167 LEU 167 262 262 LEU LEU A . n A 1 168 GLY 168 263 263 GLY GLY A . n A 1 169 ARG 169 264 264 ARG ARG A . n A 1 170 ASP 170 265 265 ASP ASP A . n A 1 171 SER 171 266 266 SER SER A . n A 1 172 PHE 172 267 267 PHE PHE A . n A 1 173 GLU 173 268 268 GLU GLU A . n A 1 174 VAL 174 269 269 VAL VAL A . n A 1 175 ARG 175 270 270 ARG ARG A . n A 1 176 VAL 176 271 271 VAL VAL A . n A 1 177 CYS 177 272 272 CYS CYS A . n A 1 178 ALA 178 273 273 ALA ALA A . n A 1 179 CYS 179 274 274 CYS CYS A . n A 1 180 PRO 180 275 275 PRO PRO A . n A 1 181 GLY 181 276 276 GLY GLY A . n A 1 182 ARG 182 277 277 ARG ARG A . n A 1 183 ASP 183 278 278 ASP ASP A . n A 1 184 ARG 184 279 279 ARG ARG A . n A 1 185 ARG 185 280 280 ARG ARG A . n A 1 186 THR 186 281 281 THR THR A . n A 1 187 GLU 187 282 282 GLU GLU A . n A 1 188 GLU 188 283 283 GLU GLU A . n A 1 189 GLU 189 284 284 GLU GLU A . n A 1 190 ASN 190 285 285 ASN ASN A . n A 1 191 PHE 191 286 286 PHE PHE A . n A 1 192 ARG 192 287 287 ARG ARG A . n A 1 193 LYS 193 288 288 LYS LYS A . n A 1 194 LYS 194 289 289 LYS LYS A . n A 1 195 GLU 195 290 290 GLU GLU A . n A 1 196 VAL 196 291 ? ? ? A . n A 1 197 LEU 197 292 ? ? ? A . n B 2 1 DG 1 13 ? ? ? C . n B 2 2 DA 2 14 ? ? ? C . n B 2 3 DG 3 15 ? ? ? C . n B 2 4 DC 4 16 ? ? ? C . n B 2 5 DA 5 17 ? ? ? C . n B 2 6 DT 6 18 18 DT DT C . n B 2 7 DG 7 19 19 DG DG C . n B 2 8 DC 8 20 20 DC DC C . n B 2 9 DT 9 21 21 DT DT C . n B 2 10 DC 10 22 22 DC DC C . n B 2 11 DA 11 23 ? ? ? C . n C 3 1 DT 1 1 ? ? ? D . n C 3 2 DT 2 2 ? ? ? D . n C 3 3 DG 3 3 3 DG DG D . n C 3 4 DA 4 4 4 DA DA D . n C 3 5 DG 5 5 5 DG DG D . n C 3 6 DC 6 6 6 DC DC D . n C 3 7 DA 7 7 7 DA DA D . n C 3 8 DT 8 8 ? ? ? D . n C 3 9 DG 9 9 ? ? ? D . n C 3 10 DC 10 10 ? ? ? D . n C 3 11 DT 11 11 ? ? ? D . n C 3 12 DC 12 12 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FLC 1 585 585 FLC FLC A . E 5 ZN 1 1 1 ZN ZN A . F 6 HOH 1 2 2 HOH HOH A . F 6 HOH 2 3 3 HOH HOH A . F 6 HOH 3 4 4 HOH HOH A . F 6 HOH 4 5 5 HOH HOH A . F 6 HOH 5 6 6 HOH HOH A . F 6 HOH 6 7 7 HOH HOH A . F 6 HOH 7 8 8 HOH HOH A . F 6 HOH 8 9 9 HOH HOH A . F 6 HOH 9 10 10 HOH HOH A . F 6 HOH 10 11 11 HOH HOH A . F 6 HOH 11 12 12 HOH HOH A . F 6 HOH 12 13 13 HOH HOH A . F 6 HOH 13 14 14 HOH HOH A . F 6 HOH 14 15 15 HOH HOH A . F 6 HOH 15 16 16 HOH HOH A . F 6 HOH 16 17 17 HOH HOH A . F 6 HOH 17 18 18 HOH HOH A . F 6 HOH 18 19 19 HOH HOH A . F 6 HOH 19 20 20 HOH HOH A . F 6 HOH 20 21 21 HOH HOH A . F 6 HOH 21 22 22 HOH HOH A . F 6 HOH 22 23 23 HOH HOH A . F 6 HOH 23 24 24 HOH HOH A . F 6 HOH 24 25 25 HOH HOH A . F 6 HOH 25 26 26 HOH HOH A . F 6 HOH 26 27 27 HOH HOH A . F 6 HOH 27 28 28 HOH HOH A . F 6 HOH 28 29 29 HOH HOH A . F 6 HOH 29 30 30 HOH HOH A . F 6 HOH 30 31 31 HOH HOH A . F 6 HOH 31 32 32 HOH HOH A . F 6 HOH 32 33 33 HOH HOH A . F 6 HOH 33 34 34 HOH HOH A . F 6 HOH 34 35 35 HOH HOH A . F 6 HOH 35 36 36 HOH HOH A . F 6 HOH 36 37 37 HOH HOH A . F 6 HOH 37 38 38 HOH HOH A . F 6 HOH 38 39 39 HOH HOH A . F 6 HOH 39 40 40 HOH HOH A . F 6 HOH 40 41 41 HOH HOH A . F 6 HOH 41 42 42 HOH HOH A . F 6 HOH 42 43 43 HOH HOH A . F 6 HOH 43 44 44 HOH HOH A . F 6 HOH 44 45 45 HOH HOH A . F 6 HOH 45 46 46 HOH HOH A . F 6 HOH 46 47 47 HOH HOH A . F 6 HOH 47 48 48 HOH HOH A . F 6 HOH 48 49 49 HOH HOH A . F 6 HOH 49 50 50 HOH HOH A . F 6 HOH 50 51 51 HOH HOH A . F 6 HOH 51 52 52 HOH HOH A . F 6 HOH 52 53 53 HOH HOH A . F 6 HOH 53 54 54 HOH HOH A . F 6 HOH 54 55 55 HOH HOH A . F 6 HOH 55 56 56 HOH HOH A . F 6 HOH 56 57 57 HOH HOH A . F 6 HOH 57 59 59 HOH HOH A . F 6 HOH 58 60 60 HOH HOH A . F 6 HOH 59 61 61 HOH HOH A . F 6 HOH 60 62 62 HOH HOH A . F 6 HOH 61 63 63 HOH HOH A . F 6 HOH 62 64 64 HOH HOH A . F 6 HOH 63 65 65 HOH HOH A . F 6 HOH 64 66 66 HOH HOH A . F 6 HOH 65 67 67 HOH HOH A . F 6 HOH 66 68 68 HOH HOH A . F 6 HOH 67 69 69 HOH HOH A . F 6 HOH 68 70 70 HOH HOH A . F 6 HOH 69 71 71 HOH HOH A . F 6 HOH 70 72 72 HOH HOH A . F 6 HOH 71 73 73 HOH HOH A . F 6 HOH 72 74 74 HOH HOH A . F 6 HOH 73 75 75 HOH HOH A . F 6 HOH 74 76 76 HOH HOH A . F 6 HOH 75 77 77 HOH HOH A . F 6 HOH 76 78 78 HOH HOH A . F 6 HOH 77 79 79 HOH HOH A . F 6 HOH 78 80 80 HOH HOH A . F 6 HOH 79 81 81 HOH HOH A . F 6 HOH 80 82 82 HOH HOH A . F 6 HOH 81 83 83 HOH HOH A . F 6 HOH 82 84 84 HOH HOH A . F 6 HOH 83 85 85 HOH HOH A . F 6 HOH 84 86 86 HOH HOH A . F 6 HOH 85 87 87 HOH HOH A . F 6 HOH 86 88 88 HOH HOH A . F 6 HOH 87 89 89 HOH HOH A . F 6 HOH 88 90 90 HOH HOH A . F 6 HOH 89 91 91 HOH HOH A . F 6 HOH 90 92 92 HOH HOH A . F 6 HOH 91 93 93 HOH HOH A . F 6 HOH 92 94 94 HOH HOH A . F 6 HOH 93 95 95 HOH HOH A . F 6 HOH 94 294 294 HOH HOH A . F 6 HOH 95 295 295 HOH HOH A . F 6 HOH 96 296 296 HOH HOH A . F 6 HOH 97 297 297 HOH HOH A . F 6 HOH 98 298 298 HOH HOH A . F 6 HOH 99 299 299 HOH HOH A . F 6 HOH 100 300 300 HOH HOH A . F 6 HOH 101 301 301 HOH HOH A . F 6 HOH 102 302 302 HOH HOH A . F 6 HOH 103 303 303 HOH HOH A . F 6 HOH 104 304 304 HOH HOH A . F 6 HOH 105 305 305 HOH HOH A . F 6 HOH 106 306 306 HOH HOH A . F 6 HOH 107 307 307 HOH HOH A . F 6 HOH 108 308 308 HOH HOH A . F 6 HOH 109 309 309 HOH HOH A . F 6 HOH 110 310 310 HOH HOH A . F 6 HOH 111 311 311 HOH HOH A . F 6 HOH 112 312 312 HOH HOH A . F 6 HOH 113 313 313 HOH HOH A . F 6 HOH 114 314 314 HOH HOH A . F 6 HOH 115 315 315 HOH HOH A . F 6 HOH 116 316 316 HOH HOH A . F 6 HOH 117 317 317 HOH HOH A . F 6 HOH 118 318 318 HOH HOH A . F 6 HOH 119 319 319 HOH HOH A . F 6 HOH 120 320 320 HOH HOH A . F 6 HOH 121 321 321 HOH HOH A . F 6 HOH 122 322 322 HOH HOH A . F 6 HOH 123 323 323 HOH HOH A . F 6 HOH 124 324 324 HOH HOH A . F 6 HOH 125 325 325 HOH HOH A . F 6 HOH 126 326 326 HOH HOH A . F 6 HOH 127 327 327 HOH HOH A . F 6 HOH 128 328 328 HOH HOH A . F 6 HOH 129 329 329 HOH HOH A . F 6 HOH 130 330 330 HOH HOH A . F 6 HOH 131 331 331 HOH HOH A . F 6 HOH 132 332 332 HOH HOH A . F 6 HOH 133 333 333 HOH HOH A . F 6 HOH 134 334 334 HOH HOH A . F 6 HOH 135 335 335 HOH HOH A . F 6 HOH 136 336 336 HOH HOH A . F 6 HOH 137 337 337 HOH HOH A . F 6 HOH 138 338 338 HOH HOH A . F 6 HOH 139 339 339 HOH HOH A . F 6 HOH 140 340 340 HOH HOH A . F 6 HOH 141 341 341 HOH HOH A . F 6 HOH 142 342 342 HOH HOH A . F 6 HOH 143 343 343 HOH HOH A . F 6 HOH 144 344 344 HOH HOH A . F 6 HOH 145 345 345 HOH HOH A . F 6 HOH 146 346 346 HOH HOH A . F 6 HOH 147 347 347 HOH HOH A . F 6 HOH 148 348 348 HOH HOH A . F 6 HOH 149 350 350 HOH HOH A . F 6 HOH 150 351 351 HOH HOH A . F 6 HOH 151 352 352 HOH HOH A . F 6 HOH 152 353 353 HOH HOH A . F 6 HOH 153 354 354 HOH HOH A . F 6 HOH 154 355 355 HOH HOH A . F 6 HOH 155 356 356 HOH HOH A . F 6 HOH 156 357 357 HOH HOH A . F 6 HOH 157 358 358 HOH HOH A . G 6 HOH 1 58 58 HOH HOH C . G 6 HOH 2 150 150 HOH HOH C . G 6 HOH 3 349 349 HOH HOH C . H 6 HOH 1 151 151 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 -8.4337917224 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 33.3790104884 3 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -8.4337917224 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 33.3790104884 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 78 ? A CYS 173 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 ND1 ? A HIS 81 ? A HIS 176 ? 1_555 97.0 ? 2 SG ? A CYS 78 ? A CYS 173 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 140 ? A CYS 235 ? 1_555 109.6 ? 3 ND1 ? A HIS 81 ? A HIS 176 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 140 ? A CYS 235 ? 1_555 111.4 ? 4 SG ? A CYS 78 ? A CYS 173 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 144 ? A CYS 239 ? 1_555 113.4 ? 5 ND1 ? A HIS 81 ? A HIS 176 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 144 ? A CYS 239 ? 1_555 106.2 ? 6 SG ? A CYS 140 ? A CYS 235 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 144 ? A CYS 239 ? 1_555 117.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 Blu-Ice Ice ? ? ? ? 'data collection' ? ? ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 5 PHASER . ? ? ? ? phasing ? ? ? 6 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;The complete crystallized DNA sequence is 5'-TTGAGCATGCTCGAGCATGCTCA-3'. The sequence in the asymmetric unit is only a quarter of the complete sequence (TGCTC for chain C and GAGCA for chain D). The biological unit of tetramer is generated by applying to chains (A,C,D) (X, Y, Z+1; -X, Y, -Z; -X, Y, -Z+1) symmetry. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 116 ? ? 92.76 -38.03 2 1 ASN A 244 ? ? 39.55 53.46 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 97 ? CG ? A GLN 2 CG 2 1 Y 1 A GLN 97 ? CD ? A GLN 2 CD 3 1 Y 1 A GLN 97 ? OE1 ? A GLN 2 OE1 4 1 Y 1 A GLN 97 ? NE2 ? A GLN 2 NE2 5 1 Y 1 A LYS 98 ? CG ? A LYS 3 CG 6 1 Y 1 A LYS 98 ? CD ? A LYS 3 CD 7 1 Y 1 A LYS 98 ? CE ? A LYS 3 CE 8 1 Y 1 A LYS 98 ? NZ ? A LYS 3 NZ 9 1 Y 1 A SER 180 ? OG ? A SER 85 OG 10 1 Y 1 A ARG 206 ? CG ? A ARG 111 CG 11 1 Y 1 A ARG 206 ? CD ? A ARG 111 CD 12 1 Y 1 A ARG 206 ? NE ? A ARG 111 NE 13 1 Y 1 A ARG 206 ? CZ ? A ARG 111 CZ 14 1 Y 1 A ARG 206 ? NH1 ? A ARG 111 NH1 15 1 Y 1 A ARG 206 ? NH2 ? A ARG 111 NH2 16 1 Y 1 A ARG 287 ? CG ? A ARG 192 CG 17 1 Y 1 A ARG 287 ? CD ? A ARG 192 CD 18 1 Y 1 A ARG 287 ? NE ? A ARG 192 NE 19 1 Y 1 A ARG 287 ? CZ ? A ARG 192 CZ 20 1 Y 1 A ARG 287 ? NH1 ? A ARG 192 NH1 21 1 Y 1 A ARG 287 ? NH2 ? A ARG 192 NH2 22 1 Y 1 A LYS 288 ? CG ? A LYS 193 CG 23 1 Y 1 A LYS 288 ? CD ? A LYS 193 CD 24 1 Y 1 A LYS 288 ? CE ? A LYS 193 CE 25 1 Y 1 A LYS 288 ? NZ ? A LYS 193 NZ 26 1 Y 1 A LYS 289 ? CG ? A LYS 194 CG 27 1 Y 1 A LYS 289 ? CD ? A LYS 194 CD 28 1 Y 1 A LYS 289 ? CE ? A LYS 194 CE 29 1 Y 1 A LYS 289 ? NZ ? A LYS 194 NZ 30 1 Y 1 A GLU 290 ? CG ? A GLU 195 CG 31 1 Y 1 A GLU 290 ? CD ? A GLU 195 CD 32 1 Y 1 A GLU 290 ? OE1 ? A GLU 195 OE1 33 1 Y 1 A GLU 290 ? OE2 ? A GLU 195 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 96 ? A SER 1 2 1 Y 1 A VAL 291 ? A VAL 196 3 1 Y 1 A LEU 292 ? A LEU 197 4 1 Y 1 C DG 13 ? B DG 1 5 1 Y 1 C DA 14 ? B DA 2 6 1 Y 1 C DG 15 ? B DG 3 7 1 Y 1 C DC 16 ? B DC 4 8 1 Y 1 C DA 17 ? B DA 5 9 1 Y 1 C DA 23 ? B DA 11 10 1 Y 1 D DT 1 ? C DT 1 11 1 Y 1 D DT 2 ? C DT 2 12 1 Y 1 D DT 8 ? C DT 8 13 1 Y 1 D DG 9 ? C DG 9 14 1 Y 1 D DC 10 ? C DC 10 15 1 Y 1 D DT 11 ? C DT 11 16 1 Y 1 D DC 12 ? C DC 12 # _ndb_struct_conf_na.entry_id 3EXL _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 6 1_555 C DA 7 1_555 -0.137 -0.288 -0.176 3.767 -7.824 17.833 1 C_DT18:DA7_D C 18 ? D 7 ? 20 1 1 B DG 7 1_555 C DC 6 1_555 -0.293 0.042 -0.375 -7.513 -5.762 3.491 2 C_DG19:DC6_D C 19 ? D 6 ? 19 1 1 B DC 8 1_555 C DG 5 1_555 0.164 -0.009 -0.061 -8.700 -6.842 3.090 3 C_DC20:DG5_D C 20 ? D 5 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 -0.048 -0.141 0.135 -6.477 -15.517 -0.030 4 C_DT21:DA4_D C 21 ? D 4 ? 20 1 1 B DC 10 1_555 C DG 3 1_555 0.201 -0.063 0.263 2.373 -7.635 0.596 5 C_DC22:DG3_D C 22 ? D 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 6 1_555 C DA 7 1_555 B DG 7 1_555 C DC 6 1_555 -1.355 0.424 3.555 -3.012 3.402 39.414 0.185 1.607 3.667 5.024 4.447 39.665 1 CC_DT18DG19:DC6DA7_DD C 18 ? D 7 ? C 19 ? D 6 ? 1 B DG 7 1_555 C DC 6 1_555 B DC 8 1_555 C DG 5 1_555 -0.597 -0.333 3.318 -2.976 -0.436 36.939 -0.464 0.532 3.358 -0.687 4.688 37.057 2 CC_DG19DC20:DG5DC6_DD C 19 ? D 6 ? C 20 ? D 5 ? 1 B DC 8 1_555 C DG 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.938 0.307 3.333 -2.247 -0.852 36.322 0.612 1.182 3.375 -1.365 3.600 36.399 3 CC_DC20DT21:DA4DG5_DD C 20 ? D 5 ? C 21 ? D 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DC 10 1_555 C DG 3 1_555 0.323 0.144 3.152 -0.391 2.357 37.648 -0.072 -0.548 3.152 3.648 0.605 37.721 4 CC_DT21DC22:DG3DA4_DD C 21 ? D 4 ? C 22 ? D 3 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CITRATE ANION' FLC 5 'ZINC ION' ZN 6 water HOH #