HEADER LYASE 17-OCT-08 3EXT TITLE CRYSTAL STRUCTURE OF KGPDC FROM STREPTOCOCCUS MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RMPD (HEXULOSE-6-PHOSPHATE SYNTHASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE; COMPND 5 EC: 4.1.1.85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 GENE: ULAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU,G.L.LI,L.F.LI,X.D.SU REVDAT 4 01-NOV-23 3EXT 1 REMARK LINK REVDAT 3 23-MAY-18 3EXT 1 REMARK REVDAT 2 13-JUL-11 3EXT 1 VERSN REVDAT 1 25-AUG-09 3EXT 0 JRNL AUTH G.L.LI,X.LIU,J.NAN,E.BROSTROMER,L.F.LI,X.D.SU JRNL TITL OPEN-CLOSED CONFORMATIONAL CHANGE REVEALED BY THE CRYSTAL JRNL TITL 2 STRUCTURES OF 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE JRNL TITL 3 FROM STREPTOCOCCUS MUTANS JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 381 429 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19222992 JRNL DOI 10.1016/J.BBRC.2009.02.049 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 19853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1042 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1579 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1603 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2173 ; 1.537 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 6.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;34.259 ;25.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;12.357 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1188 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 701 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1104 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.071 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1074 ; 0.958 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1655 ; 1.455 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 629 ; 2.303 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 518 ; 3.267 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8446 39.2063 26.0476 REMARK 3 T TENSOR REMARK 3 T11: 0.0410 T22: 0.0285 REMARK 3 T33: 0.0897 T12: 0.0383 REMARK 3 T13: 0.0149 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.5861 L22: 1.0382 REMARK 3 L33: 1.5716 L12: -0.7766 REMARK 3 L13: -0.0315 L23: -0.0775 REMARK 3 S TENSOR REMARK 3 S11: 0.2265 S12: -0.0031 S13: 0.0972 REMARK 3 S21: -0.1441 S22: -0.0595 S23: -0.0253 REMARK 3 S31: 0.0650 S32: 0.2027 S33: -0.1670 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3148 33.6044 12.2769 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.0981 REMARK 3 T33: -0.0181 T12: 0.1925 REMARK 3 T13: -0.0077 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.2526 L22: 5.6287 REMARK 3 L33: 1.6176 L12: -0.1032 REMARK 3 L13: -0.6093 L23: 1.1590 REMARK 3 S TENSOR REMARK 3 S11: 0.4744 S12: 0.3743 S13: -0.0335 REMARK 3 S21: -0.6760 S22: -0.3519 S23: -0.0762 REMARK 3 S31: 0.0830 S32: 0.1282 S33: -0.1225 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0385 26.9224 12.2115 REMARK 3 T TENSOR REMARK 3 T11: 0.1911 T22: 0.1149 REMARK 3 T33: -0.0149 T12: 0.2336 REMARK 3 T13: -0.0378 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: 1.6969 L22: 3.7285 REMARK 3 L33: 1.2463 L12: -0.0006 REMARK 3 L13: -0.2257 L23: -0.4229 REMARK 3 S TENSOR REMARK 3 S11: 0.4842 S12: 0.2566 S13: -0.1516 REMARK 3 S21: -0.5028 S22: -0.3688 S23: -0.1180 REMARK 3 S31: 0.2778 S32: 0.1520 S33: -0.1154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5620 19.5656 25.8154 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: -0.0064 REMARK 3 T33: 0.1081 T12: 0.1539 REMARK 3 T13: -0.0903 T23: -0.1149 REMARK 3 L TENSOR REMARK 3 L11: 3.0655 L22: 3.5750 REMARK 3 L33: 3.1530 L12: -2.5279 REMARK 3 L13: -2.5771 L23: 0.9125 REMARK 3 S TENSOR REMARK 3 S11: 0.1235 S12: 0.1258 S13: -0.1619 REMARK 3 S21: -0.0522 S22: -0.1751 S23: 0.3364 REMARK 3 S31: 0.5644 S32: 0.3367 S33: 0.0517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9074 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KCL, 0.05M HEPES, PH7.5, 35%(V/V) REMARK 280 PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 41.89000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.81000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 41.89000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 85.81000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 41.89000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 85.81000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 41.89000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 85.81000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 41.89000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 85.81000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 41.89000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 85.81000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 41.89000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 85.81000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 41.89000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 41.89000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 83.78000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 297 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 145 REMARK 465 ALA A 146 REMARK 465 LEU A 147 REMARK 465 LEU A 148 REMARK 465 ALA A 149 REMARK 465 GLY A 150 REMARK 465 GLU A 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CB CG CD OE1 NE2 REMARK 470 THR A 152 OG1 CG2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 ASP A 180 CG OD1 OD2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 153 70.81 40.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 222 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE2 REMARK 620 2 ASP A 64 OD2 90.2 REMARK 620 3 HOH A 301 O 95.2 92.0 REMARK 620 4 HOH A 302 O 87.8 174.4 82.9 REMARK 620 5 HOH A 303 O 92.6 89.1 172.1 96.3 REMARK 620 6 HOH A 304 O 171.9 96.5 89.2 86.0 82.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 222 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EXR RELATED DB: PDB REMARK 900 RELATED ID: 3EXS RELATED DB: PDB DBREF 3EXT A 1 221 UNP Q93DA8 Q93DA8_STRMU 1 221 SEQRES 1 A 221 MET THR LYS GLN LEU PRO ASN LEU GLN VAL ALA LEU ASP SEQRES 2 A 221 HIS SER ASN LEU LYS GLY ALA ILE THR ALA ALA VAL SER SEQRES 3 A 221 VAL GLY ASN GLU VAL ASP VAL ILE GLU ALA GLY THR VAL SEQRES 4 A 221 CYS LEU LEU GLN VAL GLY SER GLU LEU VAL GLU VAL LEU SEQRES 5 A 221 ARG SER LEU PHE PRO ASP LYS ILE ILE VAL ALA ASP THR SEQRES 6 A 221 LYS CYS ALA ASP ALA GLY GLY THR VAL ALA LYS ASN ASN SEQRES 7 A 221 ALA VAL ARG GLY ALA ASP TRP MET THR CYS ILE CYS SER SEQRES 8 A 221 ALA THR ILE PRO THR MET LYS ALA ALA ARG LYS ALA ILE SEQRES 9 A 221 GLU ASP ILE ASN PRO ASP LYS GLY GLU ILE GLN VAL GLU SEQRES 10 A 221 LEU TYR GLY ASP TRP THR TYR ASP GLN ALA GLN GLN TRP SEQRES 11 A 221 LEU ASP ALA GLY ILE SER GLN ALA ILE TYR HIS GLN SER SEQRES 12 A 221 ARG ASP ALA LEU LEU ALA GLY GLU THR TRP GLY GLU LYS SEQRES 13 A 221 ASP LEU ASN LYS VAL LYS LYS LEU ILE GLU MET GLY PHE SEQRES 14 A 221 ARG VAL SER VAL THR GLY GLY LEU SER VAL ASP THR LEU SEQRES 15 A 221 LYS LEU PHE GLU GLY VAL ASP VAL PHE THR PHE ILE ALA SEQRES 16 A 221 GLY ARG GLY ILE THR GLU ALA LYS ASN PRO ALA GLY ALA SEQRES 17 A 221 ALA ARG ALA PHE LYS ASP GLU ILE LYS ARG ILE TRP GLY HET MG A 222 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *82(H2 O) HELIX 1 1 ASN A 16 GLY A 28 1 13 HELIX 2 2 ASN A 29 VAL A 31 5 3 HELIX 3 3 GLY A 37 GLY A 45 1 9 HELIX 4 4 SER A 46 PHE A 56 1 11 HELIX 5 5 ALA A 70 VAL A 80 1 11 HELIX 6 6 THR A 93 ASN A 108 1 16 HELIX 7 7 THR A 123 ALA A 133 1 11 HELIX 8 8 GLY A 154 GLY A 168 1 15 HELIX 9 9 THR A 181 GLU A 186 5 6 HELIX 10 10 GLY A 196 GLU A 201 1 6 HELIX 11 11 ASN A 204 GLY A 221 1 18 SHEET 1 A 9 ASN A 7 LEU A 12 0 SHEET 2 A 9 VAL A 33 ALA A 36 1 O GLU A 35 N VAL A 10 SHEET 3 A 9 ILE A 60 CYS A 67 1 O VAL A 62 N ALA A 36 SHEET 4 A 9 TRP A 85 ILE A 89 1 O TRP A 85 N ALA A 63 SHEET 5 A 9 GLU A 113 GLU A 117 1 O GLU A 117 N CYS A 88 SHEET 6 A 9 GLN A 137 HIS A 141 1 O ILE A 139 N VAL A 116 SHEET 7 A 9 ARG A 170 THR A 174 1 O SER A 172 N TYR A 140 SHEET 8 A 9 THR A 192 ALA A 195 1 O ILE A 194 N VAL A 173 SHEET 9 A 9 ASN A 7 LEU A 12 1 N GLN A 9 O ALA A 195 LINK OE2 GLU A 35 MG MG A 222 1555 1555 2.12 LINK OD2 ASP A 64 MG MG A 222 1555 1555 1.93 LINK MG MG A 222 O HOH A 301 1555 1555 2.31 LINK MG MG A 222 O HOH A 302 1555 1555 2.34 LINK MG MG A 222 O HOH A 303 1555 1555 1.91 LINK MG MG A 222 O HOH A 304 1555 1555 2.14 SITE 1 AC1 6 GLU A 35 ASP A 64 HOH A 301 HOH A 302 SITE 2 AC1 6 HOH A 303 HOH A 304 CRYST1 83.780 83.780 171.620 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005827 0.00000